Sequence of DPV Pepper yellow vein Mali virus
Pepper yellow vein Mali virus complete genome, isolate Burkina Faso-Bazega-hot pepper2-2008
ACC No: FM876852
Dated: 2011-03-04 | Length: 2778 | CRC: 142493207
ID FM876852; SV 1; circular; genomic DNA; STD; VRL; 2778 BP.
XX
AC FM876852;
XX
DT 20-JAN-2009 (Rel. 99, Created)
DT 04-MAR-2011 (Rel. 108, Last updated, Version 3)
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DE Pepper yellow vein Mali virus complete genome, isolate Burkina
DE Faso-Bazega-hot pepper2-2008
XX
KW complete genome.
XX
OS Pepper yellow vein Mali virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2778
RA Tiendrebeogo F.;
RT ;
RL Submitted (19-NOV-2008) to the EMBL/GenBank/DDBJ databases.
RL Tiendrebeogo F., Biochimie-Microbiologie, CRSBAN/UFR/SVT Universite de
RL Ouagadougou, 03 BP 7131 Ouagadougou 03, BURKINA FASO.
XX
RN [2]
RA Tiendrebeogo F., Lefeuvre P., Hoareau M., Traore V.S., Barro N.,
RA Perefarres F., Reynaud B., Traore A.S., Konate G., Lett J.M., Traore O.;
RT "Molecular and biological characterization of Pepper yellow vein Mali virus
RT (PepYVMV) isolates associated with pepper yellow vein disease in Burkina
RT Faso";
RL Arch. Virol. 156(3):483-487(2011).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2778
FT /organism="Pepper yellow vein Mali virus"
FT /host="Capsicum frutescens"
FT /strain="Mali"
FT /isolate="Burkina Faso-Bazega-hot pepper2-2008"
FT /mol_type="genomic DNA"
FT /country="Burkina Faso"
FT /lat_lon="11.58 N 1.26 W"
FT /collected_by="Fidele Tiendrebeogo"
FT /collection_date="Nov-2007"
FT /db_xref="taxon:260378"
FT CDS 139. .489
FT /gene="V2"
FT /product="movement protein (MP)"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:B8ZWN8"
FT /protein_id="CAS97495.1"
FT /translation="MWDPLLNEFPDSVHGFRCMLAIKYLQAVEESYEPNTLGHDLIRDL
FT ICVIRARDYVEATRRYNHFHARLEGSSKAELRQPIQQPCCCPHCPRHKQASFMDLPAHV
FT SKAQDVQNVQKP"
FT CDS 299. .1075
FT /gene="CP"
FT /product="coat protein (CP)"
FT /db_xref="GOA:B8ZWN9"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:B8ZWN9"
FT /protein_id="CAS97496.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAVVPTVHGTNRRRSW
FT TYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITH
FT RVGKRFCIKCIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPQDFGQVFNMFDN
FT EPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1072. .1476)
FT /gene="C3"
FT /product="replication enhancer protein (REn)"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:B8ZWP0"
FT /protein_id="CAS97497.1"
FT /translation="MDSRTGEHITARQAKNGVFIWEINNPLYFTITNHDIRPFNMNQDI
FT LTLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFRFQVLKYLNNLGVISINN
FT VIRAVDHVLYVVLVNTISVMENHEIKFNLY"
FT CDS complement(1217. .1624)
FT /gene="C2"
FT /product="transcription activator protein (TrAP)"
FT /db_xref="GOA:B8ZWP1"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:B8ZWP1"
FT /protein_id="CAS97498.1"
FT /translation="MQXSSPSTGHSTQVPIKVLHRRAKTKAIRRKRIDLDCGCSYYLHI
FT DCINHGFTHRGTHHCSSSKEWRFYMGDKQSPLFHDNKSRHQTIQHEPRHPHTPNTIQSQ
FT PQEGTGDSQMFSQLQGLDDLTASDWSFLKSL"
FT CDS complement(1548. .2612)
FT /gene="C1"
FT /product="replication associated protein (Rep)"
FT /db_xref="GOA:B8ZWP2"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:B8ZWP2"
FT /protein_id="CAS97499.1"
FT /translation="MAPPKRFKINSKNYFLTFPKCSLTKEEALEQLLNLSTPTNKKFIK
FT VCRELHTNGEPHLHVLMQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYV
FT EKDGDTLEWGVFQVDGRSARGGCRNANDAAAEALNADSAEAAMAIIREKLPKEFIFQFH
FT NLKNNLDRIFQEPPAPYVSPFLLSSFTQVPEELEEWVSENVMGAAARPWRPTSIVVEGD
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRNW
FT QSNTKYGKPIQIKGGIPCIFLCNPGPTSSYKEFLEEPKNYALKSWTLKNATFVTLNRPL
FT YSSTNQGSPPQSQD"
FT CDS complement(2198. .2455)
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:B8ZWP3"
FT /protein_id="CAS97500.1"
FT /translation="MGNLISTCLCSSRGNTSARITDSSTWYPQPGQHISIQTFRELNQA
FT PTSSPTSRRTETPLNGAYSRSTAEVLGEAAEMLTTQRQRP"
XX
SQ Sequence 2778 BP; 723 A; 569 C; 644 G; 841 T; 1 other;
fm876852 Length: 2778 04-MAR-2011 Type: N Check: 4241 ..
1 accggatggc cgcgcccccg aaaaagatat gggtcccacg cactaatttg
51 tgtcgaccaa tcatatcgca gcctgaaagg ctagatattt gttttttgtc
101 tttatatact tgctcaccaa gtatgggctt tatccatcat gtgggatcca
151 cttttgaacg agtttcctga ctctgttcac ggatttcgtt gtatgctcgc
201 catcaaatat ttgcaggccg tggaggaaag ttacgagccc aatactttgg
251 gccacgattt aattagggat cttatttgtg ttattagggc tcgagactat
301 gtcgaagcga cccggcgata taatcatttc cacgcccgtc tcgaaggttc
351 gtcgaaggct gaacttcgac agcccataca gcagccgtgc tgttgtcccc
401 actgtccacg gcacaaacag gcgtcgttca tggacctacc ggcccatgta
451 tcgaaagccc aggatgtaca gaatgttcag aagccctgat gtgcctcgtg
501 gttgtgaggg tccgtgtaag gttcagtcct acgaacagag ggatgatgtt
551 aagcacactg gtattgttcg ctgcgttagt gatgtcacac gtggccccgg
601 tattactcat cgtgtaggaa agagattttg tattaagtgt atatatattt
651 tgggtaaaat ctggatggat gaaaatatca agaagcagaa tcacactaac
701 caggttatgt tttttttagt ccgtgataga aggccctatg gaactagccc
751 acaggacttt gggcaggttt ttaacatgtt cgataatgag cccagtactg
801 ctaccgtcaa gaatgatttg cgtgatcgtt atcaagtcct caggaaattc
851 catgctacgg tagttggtgg accttctggg atgaaagagc aggctttagt
901 caagaggttt tttagggtta acactcacgt cgtttacaat catcaagaag
951 cagcgaaata tgagaatcat actgagaatg cgttgttgtt gtatatggca
1001 tgtacacatg cctctaaccc tgtgtatgct acgcttaaga tacgcatcta
1051 tttttatgat gccgttacga attaataaag attgaatttt atttcatgat
1101 tttccataac ggaaatcgta tttacaagta ccacatataa cacatgatca
1151 accgctctaa tgacattatt gatagaaatt acacctaaat tattcaaata
1201 ctttaaaact tggaacctaa agactcttaa gaaaagacca gtctgaggcc
1251 gtaaggtcgt ccagaccttg aagttgagaa aacatttgtg aatccccagt
1301 gccctcctga ggttgtgatt gaatcgtatt tggagtgtga ggatgtcttg
1351 gttcatgttg aatggtctga tgtcgtgatt tgttatcgtg aaatagaggg
1401 gattgtttat ctcccatata aaaacgccat tctttgcttg acgagcagtg
1451 atgtgttccc ctgtgcgtga atccatggtt gatgcagtcg atgtggaggt
1501 agtatgaaca gccgcagtcg aggtctattc gcttacggcg aatggcttta
1551 gtcttggctc tgcggtggag aaccttgatt ggtacttgag tagagtggcc
1601 tgttgagggt gacgaargtt gcattcttga gtgtccagct cttgagtgcg
1651 taattcttcg gctcttctag gaattcttta tatgaggatg ttgggcctgg
1701 attgcagagg aagatacagg gaattccacc tttaatttga attggcttcc
1751 cgtactttgt gttgctttgc cagttcctct gggccccaaa aaattccttc
1801 caatgcttta gataatgcgg atcaacgtca tcaatgacgt tataccatgc
1851 atcattagaa taaacctttg gacttaagtc taaatgacca cataagtaat
1901 tatgtggccc taatgaccta gcccaaacag ttttgccggt acgactgtcg
1951 ccctctacta caatactagt aggcctccat ggccgcgcag cggcacccat
2001 gacattctca gacacccact cttcaagttc ttctggaact tgagtaaaag
2051 aagacaaaag aaaaggagaa acataaggag ccgggggctc ttgaaaaatc
2101 ctatctaaat tattctttaa attatgaaac tgaaaaataa attctttagg
2151 gagtttctcc ctaataatag ccatagcggc ttcagcggaa tctgcattta
2201 aggcctctgc cgctgcgtcg ttagcatttc ggcagcctcc cctagcactt
2251 cggccgtcga cctggaatac gccccattca agggtgtctc cgtccttctc
2301 gacgtaggac ttgacgtcgg agcttgattt agctccctga atgtttggat
2351 ggaaatgtgc tgacctggtt ggggatacca ggtcgaagaa tctgttattc
2401 gtgcactggt atttcccctc gaactgcata agcacgtgga gatgaggttc
2451 cccattcgtg tgcaactctc tgcaaacttt gatgaatttt ttatttgttg
2501 gggttgatag atttagaagt tgctctaacg cttcttcttt agttagggag
2551 cattttggga aagtgaggaa ataatttttg gaatttattt taaaacgctt
2601 tggaggagcc atttggtcaa tgtaccccga ttgaccgctc ttggcaactg
2651 gcgcctacaa tcggtgtaat ggggtacaat atatacttgt acccttaatg
2701 gcattatggt aatttggtaa aggtatatta ctttaatttg aatttcaaat
2751 ttgctttagc ggccatcctt ataatatt