Sequence of DPV Papaya leaf curl China virus
Papaya leaf curl China virus HeNZM1 complete genome, isolate HeNZM1
ACC No: FN256260
Dated: 2009-03-13 | Length: 2748 | CRC: -561058496
ID FN256260; SV 1; circular; genomic DNA; STD; VRL; 2748 BP.
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AC FN256260;
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DT 13-MAR-2009 (Rel. 100, Created)
DT 13-MAR-2009 (Rel. 100, Last updated, Version 1)
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DE Papaya leaf curl China virus HeNZM1 complete genome, isolate HeNZM1
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KW complete genome.
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OS Papaya leaf curl China virus HeNZM1
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2748
RA Zhou X.P.;
RT ;
RL Submitted (11-MAR-2009) to the EMBL/GenBank/DDBJ databases.
RL Zhou X.P., Zhejiang university, Institute of biotechnology, No.268, Kaixuan
RL Road, Hangzhou, Zhejiang, 310029, CHINA.
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RN [2]
RA Zhang H., Zhu W.M., Zhou X.P.;
RT "Molecular characterization and infectivity of Papaya Leaf Curl China Virus
RT infecting tomato in China";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2748
FT /organism="Papaya leaf curl China virus HeNZM1"
FT /isolate="HeNZM1"
FT /mol_type="genomic DNA"
FT /country="China:Henan province"
FT /lat_lon="34 N 113 E"
FT /isolation_source="Tomato"
FT /collected_by="Hui Zhang"
FT /collection_date="24-Nov-2007"
FT /db_xref="taxon:623710"
FT CDS 130. .480
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="CAX53747.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL
FT ISVIRARDYVEATRRYSHFHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGESAHV
FT PKAQDVPDVQKP"
FT CDS 290. .1063
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CAX53748.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYASRAAAPTVLVTNKRRSW
FT VNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRHDVSHVGKVICVSDVTRGNGLTH
FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPYGNPQDFGQVFNMYDNE
FT PSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT CDS complement(1060. .1464)
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="CAX53749.1"
FT /translation="MDFRTGELLTATQCESGVYIWTIKHPLYFKITKHHERPFNTNHDI
FT ITIQIQFNHNLRKALGIHQCFLIFQIWTRLRPQTWRFLRVFRVQCMKYLYNLGVISINN
FT VIRACDHVLWDVLEKTEYVTHSNIIKFNLY"
FT CDS complement(1205. .1612)
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="CAX53750.1"
FT /translation="MRNSSPSTAHCTQVPIKVQHKIAKKRPVRRRRVDLTCGCSYYFGI
FT DCANHGFSHRGITHCNSMREWRVYLDDQTSPIFQDNQAPRETIQHQPRHHNDPNTIQPQ
FT PEESVGNTPVFSNLPDLDSLTSSDLAFLKSI"
FT CDS complement(1542. .2600)
FT /gene="AC1"
FT /product="rep protein"
FT /protein_id="CAX53751.1"
FT /translation="MPQPKKFLINAKNYFLTYPQCSLTKEEALSQISALSTPTNKLFIR
FT ICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPSRSAHFHPNIQGAKSSTDVKAYM
FT EKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKPAALNILKEKAPKDFVLQFH
FT NLNSNLDRIFSPPQEVFVCPFLSSSFDQVPEELEDWVSENVSGAAARPWRPKSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPRVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLNEDKNSALKDWALKNAEFITLNSPL
FT YSGTNQSATQNS"
FT CDS complement(2150. .2443)
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CAX53752.1"
FT /translation="MGLLTCMSSSSSKANSSAKTTDSSISPPQAGQHISIRTFRELKAQ
FT QMLKHTWKKTETCLIMEFSKSMDDQLEEVANLPTTHMPRQSIQGPNQRPSIY"
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SQ Sequence 2748 BP; 740 A; 549 C; 598 G; 861 T; 0 other;
fn256260 Length: 2748 13-MAR-2009 Type: N Check: 657 ..
1 accggatggc cgcgattttt ttatgtggtc cccaccacaa agaaatgtcc
51 tccacttaaa acgctccctc aaagcctatt taattcaaat ccgttataaa
101 tacttggtcc ccaagtagtc acgtcaaaca tgtgggatcc tttactaaac
151 gagtttcccg aaaccgtaca tggttttaga tgtatgttag cgattaagta
201 tttgcaactg gtagaaaata catactcccc agatacatta gggtacgatt
251 taattcgtga tttaatttcg gttattcgtg ctagagacta tgtcgaagcg
301 acccgccgat atagtcattt ccactcccgc atccaaggtg cgtcgccggc
351 tgaatttcga cagcccgtat gccagccgtg ctgctgcccc cactgtcctc
401 gtcacaaaca aaaggaggtc atgggtgaat cggcccatgt accgaaagcc
451 caggatgtac cggatgtaca aaagccctga tgttcctcgt ggttgtgaag
501 gtccatgtaa ggttcagtct tatgaacagc gtcatgatgt atcgcacgta
551 ggtaaggtca tttgtgtgtc ggatgttact cgtggtaacg ggttgactca
601 tcgagttgga aagaggtttt gtgttaagtc tgtctatgtt ttgggcaaga
651 tatggatgga tgagaacatt aagaccaaga atcatactaa tactgtgatg
701 ttttttctag ttcgtgatag gagaccatat gggaatccac aggattttgg
751 tcaggtgttt aatatgtacg ataatgagcc tagcactgct actgttaaga
801 acgacaacag agatcgcttt caagttctac gccgttttca ggcgactgtt
851 actggtggtc agtatgctag taaggagcag gcaatagtca ggaaattcat
901 gaaggtgaac aaccatgtta cttataatca tcaagaagct gcgaagtatg
951 acaatcacac agagaatgct cttttgttgt atatggcatg tactcatgct
1001 agtaatccag tgtatgctac tttgaagatc agaatctatt tctatgattc
1051 tgttcagaat taataaagat tgaattttat tatatttgaa tgtgttacat
1101 attctgtttt ttccaataca tcccataata catgatcaca tgctctaatt
1151 acattgttaa tactaattac acccaaatta tataaatatt tcatacattg
1201 aaccctaaat actcttaaga aacgccaagt ctgaggacgt aagcgagtcc
1251 agatctggaa gattagaaaa cactggtgta ttcccaacgc tttcctcagg
1301 ttgtggttga attgtatttg gatcgttatg atgtcgtggt tggtgttgaa
1351 tggtctctcg tggtgcttgg ttatcttgaa atatagggga tgtttgatcg
1401 tccagatata cacgccactc tcgcattgag ttgcagtgag taattcccct
1451 gtgcgaaaat ccatgatttg cacaatctat tccgaagtag tatgagcacc
1501 cgcacgttag atcaactctc cgtctccgga cgggcctctt cttagctatt
1551 ttgtgttgca ctttgattgg tacctgagta caatgggctg ttgagggtga
1601 tgaattccgc attctttaat gcccaatctt ttaaagctga atttttatcc
1651 tcattcaagt actctttata tgatgatgtt gggcctggat tgcaaaggaa
1701 gatagttgga attccacctt taatttgaat tggtttcccg tacttagtgt
1751 tgctttgcca gtccctttgg gcccccatga attctttaaa gtgctttaga
1801 tagtgggggt ctacgtcatc aatgacgtta taccaagcct cattactgta
1851 tactcttggg cttagatcaa gatgtccaca caaataattg tgtggtccca
1901 gtgatctggc ccacattgtt ttacccgtac gactatcacc ttctatcaca
1951 atgcttttcg gtctccatgg ccgcgcagcg gcaccactca cattctcgga
2001 aacccagtct tcaagttctt ctggaacttg atcgaaagaa gaagacaaaa
2051 aaggacaaac aaacacctct tgtggaggac taaaaatcct atctaaatta
2101 ctatttaaat tatgaaactg taaaacaaaa tctttagggg ccttctcctt
2151 taatatattg agggccgctg gtttggaccc tgaattgatt gcctcggcat
2201 atgcgtcgtt ggcagattgg caacctcctc tagctgatcg tccatcgatt
2251 tggaaaactc catgatcaag cacgtctccg tctttttcca tgtatgcttt
2301 aacatctgtt gagcttttag ctccctgaat gttcggatgg aaatgtgctg
2351 acctgcttgg ggaggtgaga tcgaagaatc tgttgttttg gcacttgaat
2401 ttgccttcga actggatgag gacatgcagg tgaggagacc catcttcgtg
2451 tagttccctg caaatacgta tgaataattt attagtcggg gttgataagg
2501 ctgagatttg ggaaagtgcc tcttctttgg taagggagca ctgtggataa
2551 gtgaggaaat aattcttggc atttattaaa aatttttttg gttgaggcat
2601 ttgacttggt caatcgggtc ctctcaaact tccctatgca atcggggaat
2651 gggtccttat ttatatgtga ggacctaaat ggcattattg taaatagttt
2701 gaagaaattc aaaattcaaa atccaaaagc ggccatccgt ataatatt