Sequence of DPV Beet soil-borne virus
Beet soil-borne virus segment RNA-3, complete sequence, clone pUBS-3-wt, genomic RNA,
ACC No: FN386614
Dated: 2009-11-24 | Length: 3006 | CRC: -915064967
ID FN386614; SV 1; linear; genomic RNA; STD; VRL; 3006 BP.
XX
AC FN386614;
XX
DT 02-SEP-2009 (Rel. 102, Created)
DT 24-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE Beet soil-borne virus segment RNA-3, complete sequence, clone pUBS-3-wt,
DE genomic RNA,
XX
KW .
XX
OS Beet soil-borne virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae;
OC Pomovirus.
XX
RN [1]
RP 1-3006
RA Crutzen F.;
RT ;
RL Submitted (28-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Crutzen F., Phytopathologie (FYMY), Universite catholique de Louvain (UCL),
RL Louvain la Neuve, Place croix du Sud 2, bte 3, 1348, BELGIUM.
XX
RN [2]
RA Crutzen F., Mehrvar M., Gilmer D., Bragard C.;
RT "A full-length infectious clone of beet soil-borne virus indicates the
RT dispensability of the RNA-2 for virus survival in planta and symptom
RT expression on Chenopodium quinoa leaves";
RL J. Gen. Virol. 90(Pt 12):3051-3056(2009).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3006
FT /organism="Beet soil-borne virus"
FT /segment="RNA-3"
FT /host="Beta vulgaris subsp. vulgaris"
FT /mol_type="genomic RNA"
FT /clone="pUBS-3-wt"
FT /db_xref="taxon:46436"
FT 5'UTR 1. .405
FT CDS 406. .1689
FT /gene="tgbp1"
FT /product="putative 48K protein"
FT /function="putative cell to cell movement"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR003593"
FT /db_xref="UniProtKB/TrEMBL:C7U0R8"
FT /protein_id="CAY39853.1"
FT /translation="MEKEKLQKKEKNLNRRTNKKGVRRSDKKNSERKTKEDNRKLVEED
FT VADDLVAHESVAKDRAATCERGESQRQRADQETSVKEGAGVDSKLGSDRYAGKRQLEVV
FT SRICQESGFVATGKPLKRYPEDYFLKSGLLADFDKYLSDRLDKGCNLTKSETETVLKHL
FT RQKRRPQSFLAGSVTGVPGSGKTTLLRKIQTEAGLNSVVILANERHKIRFTQLPACYTA
FT KEILLLRTAIKYDVLLIDEYTLLQNGEILLLQRILEAKVVVLFGDRAQGNSRTADSPEW
FT LQIPVIYSSVKSRRFGKATADFCGKQGFDFEGCDQEDEVQKLDFEGSSPETDINLALTE
FT ATIEDLKEVGIECSLVKDVQGNEYDSVSLFIREEDRAALSDPELRSVAFTRHRKLLIVR
FT IPVCLMLSLFNGELNSDYRPQTNHYGKN"
FT CDS 1676. .2026
FT /gene="tgbp2"
FT /product="putative 13K protein"
FT /function="putative cell to cell movement"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:C7U0R9"
FT /protein_id="CAY39854.1"
FT /translation="MVRTNEIGARPNKYWPIVVGVIAIALFSFLTITNQKHATESGDNI
FT HKFSNGGKFQDGNKRVHYNKNNPRAYNGSSSNNTFSKLLLPGLFLAAIMYAYVQYRKPQ
FT CTVTCRGECARV"
FT CDS 1890. .2462
FT /gene="tgbp3"
FT /product="putative 22K protein"
FT /function="putative cell to cell movement"
FT /db_xref="InterPro:IPR007617"
FT /db_xref="UniProtKB/TrEMBL:C7U0S0"
FT /protein_id="CAY39855.1"
FT /translation="MDPPAIIHSQNCCCPDCSWQPSCTHTSNTESLNARSPVEENARAF
FT KGYSTDYVIMCVLVSVSLGFAIAAYFYSSGGHYDPDAAIFRQDLNEVQINFGKHPIDPK
FT VIEAVHHWQHAPFGRFQGESVDVSKDFFKDSVDEDDEEERAEMNKEEVTKKKSKVAVCN
FT RLCSIRNSLLRLFWTITLIMIVVKCRS"
FT 3'UTR 2463. .3006
XX
SQ Sequence 3006 BP; 917 A; 519 C; 660 G; 910 T; 0 other;
fn386614 Length: 3006 24-NOV-2009 Type: N Check: 9868 ..
1 ggtatttttt tttcttgccg atcgcttgtg atcaattaga aaaaacttat
51 cataaataat cttgtatggg tacatatcag ccggtttttg ccaattgttt
101 gtaccttata ctttggatta ttttaataaa aacactatta gacgtgtttc
151 ttcaatttga aatttttgaa ttcgaataat ttattcttag gtgtcctttt
201 cttcttacaa gtcaccgctt tttggcatcg acttgctaga agtttggaaa
251 acttttaaga ttgttttatt cggtttcggg acctcaattt gaagtttttc
301 gtttcatatc gcaaaagtaa aactcaagct agtaaaaaac ttttcttatc
351 accgtttctt gacacagatt cgataagttt atattatttt gcgttttact
401 tatttatgga aaaggagaag ttacagaaga aggagaaaaa tcttaatcgc
451 aggactaaca aaaagggggt caggcgctca gataagaaaa actccgaaag
501 gaaaactaag gaagacaacc gtaagttagt agaggaagac gttgcggacg
551 atcttgtggc acacgagagt gttgcgaaag atcgtgcggc tacttgcgag
601 aggggcgagt cacagcgaca acgtgccgat caggagactt cagttaaaga
651 aggagctggt gtggattcta aactaggttc cgacagatac gcaggtaaga
701 gacaacttga agttgtgtcg cgaatttgtc aggaaagtgg ttttgttgca
751 accggaaaac cgttaaaacg ctatccagaa gattatttct tgaaatccgg
801 cttattggcc gacttcgata aatacttaag tgataggttg gacaaaggct
851 gcaatttaac caagtcagaa acggaaacag ttctcaagca cctgcgacag
901 aaaaggagac ctcagtcttt tcttgctgga agtgttaccg gcgtacctgg
951 tagtggaaaa accactttgc tcagaaaaat tcaaaccgaa gcgggtttga
1001 actccgttgt tatattggct aacgagcgtc acaaaatacg ttttacacag
1051 ttgcctgcct gttatacagc taaagaaata ttgttgttga gaacggcaat
1101 taagtacgat gttttgttaa tagacgagta tacgttgtta cagaacggtg
1151 aaattctgtt actgcaacgt atactagaag cgaaagtagt ggtgctattt
1201 ggtgacagag cgcaaggcaa ctcccgtact gcggatagtc cagagtggtt
1251 gcagattcca gttatctact cttctgttaa gagtagacgt tttggaaagg
1301 ccaccgcgga tttttgcggc aaacagggtt ttgattttga aggttgtgac
1351 caggaggacg aagtgcagaa attagatttc gaaggatcgt cacctgagac
1401 agacatcaat ttagcgctca ccgaagctac tatcgaggat ttaaaagaag
1451 ttgggataga gtgttctttg gttaaagacg ttcaaggcaa cgaatacgat
1501 tccgtatctc tcttcatcag agaagaggat cgtgcggcac tatccgatcc
1551 ggagttaaga agcgttgcgt ttacgaggca tagaaagctg ctaatagttc
1601 gtatccccgt ttgtttaatg ctttcactgt ttaacggtga gttgaattcg
1651 gactatcgac cgcaaaccaa ccattatggt aagaactaat gagatcggcg
1701 ccagacctaa taagtattgg ccaattgtcg taggtgtaat tgcaattgcg
1751 ttgttcagtt ttttaactat aactaatcag aaacacgcca cagagtcggg
1801 agataatatc cacaagtttt caaacggtgg aaaatttcaa gacggcaata
1851 agcgtgttca ttataataag aataatccta gagcttataa tggatcctcc
1901 agcaataata cattctcaaa actgttgttg cccggattgt tcttggcagc
1951 catcatgtac gcatacgtcc aataccgaaa gcctcaatgc acggtcacct
2001 gtagaggaga atgcgcgcgc gtttaaaggt tacagtactg actatgttat
2051 catgtgtgtg ttagtgagtg tatctttagg tttcgcaatc gcagcatatt
2101 tttattcatc gggagggcat tacgatcctg acgcggcaat ctttagacaa
2151 gatttaaatg aagttcaaat caacttcgga aagcatccaa ttgacccgaa
2201 agtgattgaa gcagtccatc attggcaaca tgctcctttc ggacgttttc
2251 aaggtgaaag cgtggatgtg agtaaagact tttttaaaga ttccgtagat
2301 gaagatgatg aagaggaacg tgccgagatg aataaagaag aagtaacgaa
2351 gaaaaaatct aaggttgctg tatgtaatcg cttgtgttct attaggaata
2401 gcttattaag gttattttgg acaatcacct taataatgat agtggttaag
2451 tgtcgttcct aagtttttct ttttaaagtt ttaaactttt ctttctcttt
2501 cgacgactca gaaaattcaa aatgattaat cgtactgatc atgcgacgcg
2551 gattatgcga aaataattag taatgcgcgc taattacttt aaaatgtagc
2601 gcaactttat gtgaaatata caaatttttc tgtttattta acgttaggaa
2651 gatatgaaat ctcccataac tatgttatgg tttctcgcat atccttttaa
2701 cgctaacttt atagaaacgt ttgtatgttt ttgtttaagc tataaataaa
2751 gtagcttgta tcggtgtgcg gtaataataa agtttttctc aaacttataa
2801 atgagacgtg gcgaatacga taattcgtag tgtttgtgga taacacttta
2851 attaagattc atattgcggt ccgcagtcat tactaagata attacaaaaa
2901 acttagtatc tgacctatgc ggatgagacg agttagtctc gaccattttc
2951 acacaatggt tctgaggggt gcaactcccc cccttaacta gagggaaatc
3001 tagccc