Sequence of DPV Raspberry leaf mottle virus
Raspberry leaf mottle virus CPh gene (partial), CPm gene and CP gene (partial), genomic RNA, SCRI stock isolate
ACC No: FN391551
Dated: 2010-07-17 | Length: 2892 | CRC: 1307395884
ID FN391551; SV 1; linear; genomic RNA; STD; VRL; 2892 BP.
XX
AC FN391551;
XX
DT 02-NOV-2009 (Rel. 102, Created)
DT 17-JUL-2010 (Rel. 105, Last updated, Version 2)
XX
DE Raspberry leaf mottle virus CPh gene (partial), CPm gene and CP gene
DE (partial), genomic RNA, SCRI stock isolate
XX
KW .
XX
OS Raspberry leaf mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus; unclassified Closterovirus.
XX
RN [1]
RP 1-2892
RA MacFarlane S.A.;
RT ;
RL Submitted (01-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL MacFarlane S.A., Plant Pathology, SCRI, INvergowrie, Dundee, DD2 5DA,
RL UNITED KINGDOM.
XX
RN [2]
RA McGavin W.J., MacFarlane S.A.;
RT "Sequence similarities between Raspberry leaf mottle virus, Raspberry leaf
RT spot virus and the closterovirus Raspberry mottle virus";
RL Ann. Appl. Biol. 156(3):439-448(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2892
FT /organism="Raspberry leaf mottle virus"
FT /isolate="SCRI stock isolate"
FT /mol_type="genomic RNA"
FT /country="United Kingdom:Scotland"
FT /isolation_source="leaf"
FT /identified_by="S. MacFarlane"
FT /db_xref="taxon:326941"
FT CDS <1. .1490
FT /codon_start=3
FT /transl_table=1
FT /gene="CPh"
FT /product="coat protein homologue"
FT /db_xref="GOA:D0R6H4"
FT /db_xref="InterPro:IPR004909"
FT /db_xref="UniProtKB/TrEMBL:D0R6H4"
FT /protein_id="CAY54347.1"
FT /translation="NFYGERTYSSYLSRTTNDFRSAKVRPKLPDHTRADGSKVTSEQMW
FT AAPQGTMLNELAYLYCSDEIFGWSKRTGVDIKTLLRGIESRTAAPPEMIPADAAKEGCR
FT FSLQDVESFLLSGNFHVDTLTVEHSWALSNACGRLVNPNDVKEFKGMVYDPTLNTAKLT
FT ALSSEMGDYLGHCMELYKRYVITKSDEVTVRKEVFIWIETILAPYNLSYYGVDSNPLLT
FT GIIFDFMFEHSVYPSNYGVNLKNLRIFKDSFLPVILDIWEYEPSEKLADERLIIPASAM
FT DFALHIPKLNIYDMSVVIGERLKFLEVVFEGEKLESVTQRVIALLKVSNPDLDEDVLLD
FT TLFVYYGIFCTARSRVVPRPSSINTVRGDLKLVDVSQIESFFSELQLSTPDVNVRRSFM
FT GHHYRRVLKLYKEIGLKLPPKCDYIVPADYGYLNVDFYKQIGSDVLTEEEMGHLTAIRD
FT RVDYKCRNIVSLNSTPAQGSKFSNSRRINRRNFTRKV"
FT CDS 1567. .2259
FT /transl_table=1
FT /gene="CPm"
FT /product="coat protein minor"
FT /db_xref="GOA:D0R6H5"
FT /db_xref="InterPro:IPR002679"
FT /db_xref="UniProtKB/TrEMBL:D0R6H5"
FT /protein_id="CAY54348.1"
FT /translation="MALVPVKVNDSPANPADAAAIITSSRQDPTSFGGILARLNVASIS
FT ETQTDRFSDKQLLEVITKLSSFLKETYHTLDKDLIIHITAIVKRAFTLSTSTKVKYSNT
FT GCITYSLNDNTEYTLYDKDVFPFITNTFGGVDTPNAIRKFCCSFELCHTALANLKPSLY
FT EGKRFTRLGTPKGKAYLGADFLTGTLPSYSEHDRAITLRCSETALTKTPGEDFAIVSLR
FT DLGRRSLV"
FT CDS 2389. .>2892
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:D0R6H6"
FT /db_xref="InterPro:IPR002679"
FT /db_xref="UniProtKB/TrEMBL:D0R6H6"
FT /protein_id="CAY54349.1"
FT /translation="MAEFTIADLKEINVADNTTLSEEVEAKITKPLLAKIETANPGFDD
FT KGAKLLVGMILYRLALRTTSPNATFNAHDVTTYKVDGKSVKFDDEMVFGYIANHEAIPP
FT GIKNPLRAWGRALDQKYLKFIRPLKTTLDFNQRCNKIGLPVGYEYLCADFLTGAGLDNQ
FT EAAIL"
XX
SQ Sequence 2892 BP; 752 A; 675 C; 651 G; 814 T; 0 other;
fn391551 Length: 2892 17-JUL-2010 Type: N Check: 8713 ..
1 gaaactttta cggggaacga acgtactcgt cctacctctc caggaccacc
51 aatgatttcc gatcagccaa agttaggcct aagttacccg accacacccg
101 cgctgatggg tcgaaggtca cctccgaaca gatgtgggcg gctcctcaag
151 gtaccatgtt gaacgaatta gcctacttgt actgttccga tgagatcttc
201 ggatggagta agcgcactgg tgttgacata aagaccctgc ttaggggtat
251 cgagtctaga acggcggccc ctcctgagat gatcccagct gacgccgcta
301 aggaaggatg tagattctct cttcaggatg tagaaagctt tctgctatcc
351 ggaaattttc acgtagacac cctaactgta gaacactctt gggcacttag
401 caacgcttgc ggaaggttgg taaatcctaa cgatgttaaa gagttcaaag
451 gtatggttta cgatcctaca ctcaataccg cgaagcttac cgctctgtca
501 tcagagatgg gtgattacct aggacactgt atggaattgt acaagcgata
551 cgtcatcact aagtcggacg aggttaccgt taggaaagag gtttttattt
601 ggattgagac cattctcgct ccttacaatc ttagctatta cggcgtcgac
651 tcaaatcctc tcctgactgg gatcattttc gatttcatgt tcgagcattc
701 tgtttatccc tcgaattatg gtgtcaattt gaagaatctc cgcatcttta
751 aagattcgtt ccttccggtt atactcgaca tttgggagta cgaaccttcg
801 gagaaactcg ctgacgaaag gttgatcatc ccggcttccg ccatggactt
851 cgctctccac atacctaaac tcaacatata cgatatgtcg gtagttatag
901 gtgaaagatt gaaatttctt gaggtggttt ttgaagggga gaaactagaa
951 tccgtcactc aacgtgtgat cgctttattg aaagtttcta atcctgattt
1001 ggatgaagat gtgctcctgg atactctctt cgtctattac ggtatctttt
1051 gcactgctcg aagtagagtg gttccgagac catcctcgat caacactgtc
1101 agaggagact tgaaactggt ggacgtatca caaatcgaat ctttcttttc
1151 tgagttacag ctatctactc ccgatgtgaa cgttcgccgg tcgttcatgg
1201 gtcaccacta caggcgtgtc ttaaagctgt acaaagaaat agggcttaaa
1251 cttcctccta agtgtgatta catcgtccct gccgactatg ggtatttgaa
1301 tgttgatttt tacaagcaga taggttcgga cgttttaact gaagaggaaa
1351 tgggtcattt gacggcgatt cgggacagag tggactacaa gtgtcgtaat
1401 atagtctctt tgaattccac tcccgctcaa ggttctaaat tttctaattc
1451 gcgccgaatc aatcgccgca acttcaccag aaaggtttaa tttcgcttgg
1501 agctctagcg cttgtcttca ctcagtggga caattctcaa ttcgttcacc
1551 aacttgtatc gcgaccatgg ctctcgtacc cgttaaagtt aacgactcac
1601 cggcaaatcc ggccgatgcc gctgctataa tcacatcttc tagacaagat
1651 ccgacgtctt ttggaggtat tctcgcgcgt ttaaatgtcg cttctatctc
1701 tgaaacccaa actgatcgtt ttagcgacaa acagttgctc gaagtgataa
1751 ctaaactttc ttcgtttctc aaagaaactt atcacacttt ggacaaagat
1801 ttgatcatac acataactgc catagtgaaa agagctttca ctctctctac
1851 cagcaccaag gtgaagtatt ccaacacggg gtgcatcact tactccctta
1901 atgacaacac agagtacact ctgtatgaca aggacgtgtt tccatttatc
1951 actaatacat tcggcggggt ggatactcca aatgcgataa ggaagttttg
2001 ctgttctttc gaactttgtc acacggcgtt ggcgaatctc aaaccctctc
2051 tatacgaagg taagagattc actcgtttgg gaacccccaa aggtaaggcg
2101 tacttgggag cagactttct cactggtact ctaccgagct actccgaaca
2151 tgatagggcc ataacgctcc gatgttcgga aacggcgctt actaagactc
2201 ccggtgagga tttcgccatc gtgagtctcc gtgatctggg tcgtaggtcg
2251 ttagtatgaa cacttctctg gctgtcagtc gctctgctat tgactttcca
2301 ttgggttttc tttttagagg aacaccgaag ctattcgttt cgttcgtttc
2351 actatttaat aaaggtattc taaactaagt agggagacat ggcggaattc
2401 acgatcgcag acttgaaaga aattaatgtg gcagataaca ccactctttc
2451 ggaggaggtg gaggcaaaga ttaccaaacc gctcctcgct aaaatcgaga
2501 ccgccaatcc cggttttgat gacaaaggcg ccaagttgtt agtagggatg
2551 atactttaca ggttggcttt gcgtactact tcgcccaacg ccacttttaa
2601 cgcacatgac gtcaccacct acaaagtaga tggtaagagc gtgaaattcg
2651 atgatgaaat ggtgttcggt tacattgcta atcacgaggc tatcccaccc
2701 ggtatcaaga accctctcag ggcttggggt cgcgcgttag atcagaaata
2751 tctaaaattc attcggccgt tgaagaccac tttggacttc aatcagcgtt
2801 gcaataagat agggcttcct gtaggttatg agtacctgtg tgccgatttt
2851 cttaccgggg ctggtttaga caaccaagag gctgccatac tg