Sequence of DPV Raspberry leaf mottle virus
Raspberry leaf mottle virus CPh gene (partial), CPm gene and CP gene (partial), genomic RNA, SCRI stock isolate
ACC No: FN391551
Dated: 2010-07-17 | Length: 2892 | CRC: 1307395884
ID FN391551; SV 1; linear; genomic RNA; STD; VRL; 2892 BP. XX AC FN391551; XX DT 02-NOV-2009 (Rel. 102, Created) DT 17-JUL-2010 (Rel. 105, Last updated, Version 2) XX DE Raspberry leaf mottle virus CPh gene (partial), CPm gene and CP gene DE (partial), genomic RNA, SCRI stock isolate XX KW . XX OS Raspberry leaf mottle virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus; unclassified Closterovirus. XX RN [1] RP 1-2892 RA MacFarlane S.A.; RT ; RL Submitted (01-MAY-2009) to the EMBL/GenBank/DDBJ databases. RL MacFarlane S.A., Plant Pathology, SCRI, INvergowrie, Dundee, DD2 5DA, RL UNITED KINGDOM. XX RN [2] RA McGavin W.J., MacFarlane S.A.; RT "Sequence similarities between Raspberry leaf mottle virus, Raspberry leaf RT spot virus and the closterovirus Raspberry mottle virus"; RL Ann. Appl. Biol. 156(3):439-448(2010). XX FH Key Location/Qualifiers FH FT source 1. .2892 FT /organism="Raspberry leaf mottle virus" FT /isolate="SCRI stock isolate" FT /mol_type="genomic RNA" FT /country="United Kingdom:Scotland" FT /isolation_source="leaf" FT /identified_by="S. MacFarlane" FT /db_xref="taxon:326941" FT CDS <1. .1490 FT /codon_start=3 FT /transl_table=1 FT /gene="CPh" FT /product="coat protein homologue" FT /db_xref="GOA:D0R6H4" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:D0R6H4" FT /protein_id="CAY54347.1" FT /translation="NFYGERTYSSYLSRTTNDFRSAKVRPKLPDHTRADGSKVTSEQMW FT AAPQGTMLNELAYLYCSDEIFGWSKRTGVDIKTLLRGIESRTAAPPEMIPADAAKEGCR FT FSLQDVESFLLSGNFHVDTLTVEHSWALSNACGRLVNPNDVKEFKGMVYDPTLNTAKLT FT ALSSEMGDYLGHCMELYKRYVITKSDEVTVRKEVFIWIETILAPYNLSYYGVDSNPLLT FT GIIFDFMFEHSVYPSNYGVNLKNLRIFKDSFLPVILDIWEYEPSEKLADERLIIPASAM FT DFALHIPKLNIYDMSVVIGERLKFLEVVFEGEKLESVTQRVIALLKVSNPDLDEDVLLD FT TLFVYYGIFCTARSRVVPRPSSINTVRGDLKLVDVSQIESFFSELQLSTPDVNVRRSFM FT GHHYRRVLKLYKEIGLKLPPKCDYIVPADYGYLNVDFYKQIGSDVLTEEEMGHLTAIRD FT RVDYKCRNIVSLNSTPAQGSKFSNSRRINRRNFTRKV" FT CDS 1567. .2259 FT /transl_table=1 FT /gene="CPm" FT /product="coat protein minor" FT /db_xref="GOA:D0R6H5" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:D0R6H5" FT /protein_id="CAY54348.1" FT /translation="MALVPVKVNDSPANPADAAAIITSSRQDPTSFGGILARLNVASIS FT ETQTDRFSDKQLLEVITKLSSFLKETYHTLDKDLIIHITAIVKRAFTLSTSTKVKYSNT FT GCITYSLNDNTEYTLYDKDVFPFITNTFGGVDTPNAIRKFCCSFELCHTALANLKPSLY FT EGKRFTRLGTPKGKAYLGADFLTGTLPSYSEHDRAITLRCSETALTKTPGEDFAIVSLR FT DLGRRSLV" FT CDS 2389. .>2892 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:D0R6H6" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:D0R6H6" FT /protein_id="CAY54349.1" FT /translation="MAEFTIADLKEINVADNTTLSEEVEAKITKPLLAKIETANPGFDD FT KGAKLLVGMILYRLALRTTSPNATFNAHDVTTYKVDGKSVKFDDEMVFGYIANHEAIPP FT GIKNPLRAWGRALDQKYLKFIRPLKTTLDFNQRCNKIGLPVGYEYLCADFLTGAGLDNQ FT EAAIL" XX SQ Sequence 2892 BP; 752 A; 675 C; 651 G; 814 T; 0 other; fn391551 Length: 2892 17-JUL-2010 Type: N Check: 8713 .. 1 gaaactttta cggggaacga acgtactcgt cctacctctc caggaccacc 51 aatgatttcc gatcagccaa agttaggcct aagttacccg accacacccg 101 cgctgatggg tcgaaggtca cctccgaaca gatgtgggcg gctcctcaag 151 gtaccatgtt gaacgaatta gcctacttgt actgttccga tgagatcttc 201 ggatggagta agcgcactgg tgttgacata aagaccctgc ttaggggtat 251 cgagtctaga acggcggccc ctcctgagat gatcccagct gacgccgcta 301 aggaaggatg tagattctct cttcaggatg tagaaagctt tctgctatcc 351 ggaaattttc acgtagacac cctaactgta gaacactctt gggcacttag 401 caacgcttgc ggaaggttgg taaatcctaa cgatgttaaa gagttcaaag 451 gtatggttta cgatcctaca ctcaataccg cgaagcttac cgctctgtca 501 tcagagatgg gtgattacct aggacactgt atggaattgt acaagcgata 551 cgtcatcact aagtcggacg aggttaccgt taggaaagag gtttttattt 601 ggattgagac cattctcgct ccttacaatc ttagctatta cggcgtcgac 651 tcaaatcctc tcctgactgg gatcattttc gatttcatgt tcgagcattc 701 tgtttatccc tcgaattatg gtgtcaattt gaagaatctc cgcatcttta 751 aagattcgtt ccttccggtt atactcgaca tttgggagta cgaaccttcg 801 gagaaactcg ctgacgaaag gttgatcatc ccggcttccg ccatggactt 851 cgctctccac atacctaaac tcaacatata cgatatgtcg gtagttatag 901 gtgaaagatt gaaatttctt gaggtggttt ttgaagggga gaaactagaa 951 tccgtcactc aacgtgtgat cgctttattg aaagtttcta atcctgattt 1001 ggatgaagat gtgctcctgg atactctctt cgtctattac ggtatctttt 1051 gcactgctcg aagtagagtg gttccgagac catcctcgat caacactgtc 1101 agaggagact tgaaactggt ggacgtatca caaatcgaat ctttcttttc 1151 tgagttacag ctatctactc ccgatgtgaa cgttcgccgg tcgttcatgg 1201 gtcaccacta caggcgtgtc ttaaagctgt acaaagaaat agggcttaaa 1251 cttcctccta agtgtgatta catcgtccct gccgactatg ggtatttgaa 1301 tgttgatttt tacaagcaga taggttcgga cgttttaact gaagaggaaa 1351 tgggtcattt gacggcgatt cgggacagag tggactacaa gtgtcgtaat 1401 atagtctctt tgaattccac tcccgctcaa ggttctaaat tttctaattc 1451 gcgccgaatc aatcgccgca acttcaccag aaaggtttaa tttcgcttgg 1501 agctctagcg cttgtcttca ctcagtggga caattctcaa ttcgttcacc 1551 aacttgtatc gcgaccatgg ctctcgtacc cgttaaagtt aacgactcac 1601 cggcaaatcc ggccgatgcc gctgctataa tcacatcttc tagacaagat 1651 ccgacgtctt ttggaggtat tctcgcgcgt ttaaatgtcg cttctatctc 1701 tgaaacccaa actgatcgtt ttagcgacaa acagttgctc gaagtgataa 1751 ctaaactttc ttcgtttctc aaagaaactt atcacacttt ggacaaagat 1801 ttgatcatac acataactgc catagtgaaa agagctttca ctctctctac 1851 cagcaccaag gtgaagtatt ccaacacggg gtgcatcact tactccctta 1901 atgacaacac agagtacact ctgtatgaca aggacgtgtt tccatttatc 1951 actaatacat tcggcggggt ggatactcca aatgcgataa ggaagttttg 2001 ctgttctttc gaactttgtc acacggcgtt ggcgaatctc aaaccctctc 2051 tatacgaagg taagagattc actcgtttgg gaacccccaa aggtaaggcg 2101 tacttgggag cagactttct cactggtact ctaccgagct actccgaaca 2151 tgatagggcc ataacgctcc gatgttcgga aacggcgctt actaagactc 2201 ccggtgagga tttcgccatc gtgagtctcc gtgatctggg tcgtaggtcg 2251 ttagtatgaa cacttctctg gctgtcagtc gctctgctat tgactttcca 2301 ttgggttttc tttttagagg aacaccgaag ctattcgttt cgttcgtttc 2351 actatttaat aaaggtattc taaactaagt agggagacat ggcggaattc 2401 acgatcgcag acttgaaaga aattaatgtg gcagataaca ccactctttc 2451 ggaggaggtg gaggcaaaga ttaccaaacc gctcctcgct aaaatcgaga 2501 ccgccaatcc cggttttgat gacaaaggcg ccaagttgtt agtagggatg 2551 atactttaca ggttggcttt gcgtactact tcgcccaacg ccacttttaa 2601 cgcacatgac gtcaccacct acaaagtaga tggtaagagc gtgaaattcg 2651 atgatgaaat ggtgttcggt tacattgcta atcacgaggc tatcccaccc 2701 ggtatcaaga accctctcag ggcttggggt cgcgcgttag atcagaaata 2751 tctaaaattc attcggccgt tgaagaccac tttggacttc aatcagcgtt 2801 gcaataagat agggcttcct gtaggttatg agtacctgtg tgccgatttt 2851 cttaccgggg ctggtttaga caaccaagag gctgccatac tg