Sequence of DPV Raspberry leaf mottle virus
Raspberry leaf mottle virus CPh gene (partial), CPm gene, CP gene and P20 gene (partial), genomic RNA, isolate PM1
ACC No: FN391552
Dated: 2010-07-17 | Length: 3226 | CRC: 1473323204
ID FN391552; SV 1; linear; genomic RNA; STD; VRL; 3226 BP.
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AC FN391552;
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DT 02-NOV-2009 (Rel. 102, Created)
DT 17-JUL-2010 (Rel. 105, Last updated, Version 2)
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DE Raspberry leaf mottle virus CPh gene (partial), CPm gene, CP gene and P20
DE gene (partial), genomic RNA, isolate PM1
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KW .
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OS Raspberry leaf mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus; unclassified Closterovirus.
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RN [1]
RP 1-3226
RA MacFarlane S.A.;
RT ;
RL Submitted (01-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL MacFarlane S.A., Plant Pathology, SCRI, INvergowrie, Dundee, DD2 5DA,
RL UNITED KINGDOM.
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RN [2]
RA McGavin W.J., MacFarlane S.A.;
RT "Sequence similarities between Raspberry leaf mottle virus, Raspberry leaf
RT spot virus and the closterovirus Raspberry mottle virus";
RL Ann. Appl. Biol. 156(3):439-448(2010).
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FH Key Location/Qualifiers
FH
FT source 1. .3226
FT /organism="Raspberry leaf mottle virus"
FT /isolate="PM1"
FT /mol_type="genomic RNA"
FT /country="United Kingdom:Scotland, Alyth"
FT /identified_by="S. MacFarlane"
FT /db_xref="taxon:326941"
FT CDS <1. .1381
FT /codon_start=2
FT /transl_table=1
FT /gene="CPh"
FT /product="coat protein homologue"
FT /db_xref="GOA:D0R6H7"
FT /db_xref="InterPro:IPR004909"
FT /db_xref="UniProtKB/TrEMBL:D0R6H7"
FT /protein_id="CAY54350.1"
FT /translation="VTSAQMWAAPQGTLLNELAYLYCSDTIFGWSRRTGVDIKTLLRGI
FT ESRTTAPPEMIPADAAKEGCRFSLHDVESFLRSGNFHVDALTIEHSWALSNACGRLVNP
FT NDVKEFKGMVYDPSLDTTKLSVLSSEMGDYLGHCMELYKRHVITKSDEVTVRKEVFLWI
FT EAILNPYNLDYFGVDSNPLLTGIIFDFMFEHSVYPSNYGVNLKNLRIFKSSFLPVILDI
FT WEYEPSNKLADERLILPASAIDFALYIPKLNIYDSSVIVGERLKFLEVVFEGEKLDSIT
FT QRVVALLKVSNPGIDEDILLDTLFVYYGIFCTARNRVVPRPPVMNTIRGELKSVDVSSV
FT ESFFTELQLSTPDANVRRSFMGHHYRRVLSLYKDIGLKLPPKSDYVIPAEYGYLNVDFY
FT KQIGSDVLNEQEMAHLTAVRDRVDYKCRNITSLASTPARASKFSNSRRFNRRDFVRSFQ
FT H"
FT CDS 1450. .2142
FT /transl_table=1
FT /gene="CPm"
FT /product="coat protein minor"
FT /db_xref="GOA:D0R6H8"
FT /db_xref="InterPro:IPR002679"
FT /db_xref="UniProtKB/TrEMBL:D0R6H8"
FT /protein_id="CAY54351.1"
FT /translation="MALVPIKVNDSPANPADATAIITSSRQDPTSFGGVLARLNVASIS
FT ETQTDRFSDKQLLEVVTKLSSFLKEKYHTLDKDLIIHITAIVKRAFTLSTSSKVVYSNT
FT GCITYSLNDNTEYTLYDKDVFPFIAHTFGGVDTPNAIRKFCCSFELCHTALATLKPSLY
FT EGKRFTRLGTPKGKAYLGADFLTGTLPSYSEHDRAITLRCSETALTKTPGDDFAIVSLR
FT DLGRRSLV"
FT CDS 2270. .2866
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:D0R6H9"
FT /db_xref="InterPro:IPR002679"
FT /db_xref="UniProtKB/TrEMBL:D0R6H9"
FT /protein_id="CAY54352.1"
FT /translation="MGEFTVSDLKDMHAADGTTLSEDTSNKIIVPLIARVMEANPGFDG
FT KGSKMLLGMILYRLALRTTSPNATFNEHDVTKYKIDGKDVKFNDDMVFTFIANHEAIPP
FT GTKNPIRAWGRSLDQMYLKFVRPLKTILDFNQRCNKIGLPVGYEYLCADFLTGVGLDNH
FT EAAILNLARAEALKKEVGDSGNSITSIKQLGRFST"
FT CDS 2913. .>3226
FT /transl_table=1
FT /gene="P20"
FT /product="P20 protein"
FT /db_xref="UniProtKB/TrEMBL:D0R6I0"
FT /protein_id="CAY54353.1"
FT /translation="MDVPSVSDIVVPRGPYLFRILYFYREHCYGIFFLSDRSDGDDLGV
FT LKDMAVTDDKKYLLTDGSTFVSHPDALRNADYSVIRHITSNKRTHVADASQLAKMCRPE
FT S"
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SQ Sequence 3226 BP; 804 A; 780 C; 719 G; 923 T; 0 other;
fn391552 Length: 3226 17-JUL-2010 Type: N Check: 4821 ..
1 ggttacgtcc gctcagatgt gggctgctcc tcagggtacc ttgttgaatg
51 aactagcgta cctgtactgt tctgacacga tttttgggtg gagtagacgc
101 actggtgtcg atataaagac gttacttcga ggtattgagt ctcgtaccac
151 ggcacctcct gagatgatcc ccgccgacgc cgctaaggaa ggttgcaggt
201 tctcccttca tgacgtggaa agtttcctac ggtccggcaa tttccacgtg
251 gatgctttga ccattgaaca ctcctgggcg ctcagcaacg cttgcgggag
301 attagtgaat ccaaacgatg ttaaagaatt caaaggcatg gtttacgacc
351 cgtcgctcga caccacgaaa ctatcagttt tatcttcaga gatgggagat
401 tacttgggcc actgcatgga attatataag aggcacgtca tcactaaatc
451 tgatgaggtc actgtgagga aagaggtttt tctttggatc gaagctattc
501 tcaatcctta caatctcgac tatttcgggg tcgactcgaa tccgctcttg
551 accggtatta tatttgattt tatgttcgag cactccgttt acccgtctaa
601 ttatggtgtt aatttgaaaa accttcgcat tttcaaaagc tcattccttc
651 cggttatttt ggacatctgg gagtatgaac cttctaataa actagccgat
701 gagagattaa ttctcccggc gagtgcaata gatttcgctc tctacatacc
751 taaacttaac atatacgatt cctcggttat cgttggtgag agattgaaat
801 ttctggaggt agtttttgag ggggagaagt tagattctat cactcaacgt
851 gtagtagctc tcttgaaggt gagtaaccca ggtatcgacg aggacatcct
901 cttggacact ctctttgttt attacggcat tttctgcacc gctcgaaata
951 gagtagttcc tagaccgccc gtgatgaata ctattagagg ggagctgaag
1001 tctgtcgacg tgtcctcagt tgagtctttc ttcaccgagc tgcaactatc
1051 cactcctgac gccaatgttc gccgatcgtt catgggtcac cactacagac
1101 gcgttttgag tctgtataag gatatagggc tcaaactccc tcctaagagt
1151 gattacgtga ttcctgcgga gtacggttat ctaaacgtcg atttctataa
1201 acaaataggt tcggacgttt taaatgaaca agaaatggct catttaacag
1251 cggttcgaga tagagtggac tataaatgtc gtaacataac gtctttagct
1301 tccaccccag ctcgcgcttc taaattctct aattcacgtc ggttcaatcg
1351 gcgtgatttt gtcagaagtt ttcagcacta gcgctcggtt acgatacatt
1401 tgccttcact ctgtgggacg cgctttataa attttgccga tcttcagaca
1451 tggctctcgt tccaatcaag gttaacgatt caccggccaa ccccgctgat
1501 gcgaccgcta taatcacctc gtctaggcag gacccaacct ccttcggagg
1551 tgttcttgcg cgcctgaatg tcgcttccat ctcagaaact caaactgatc
1601 ggttcagcga taaacaattg ctcgaggtag tgactaaatt gtcctctttt
1651 cttaaagaga agtaccacac tttggacaaa gacctaatca tacatataac
1701 tgctatagtg aaaagagctt tcactctctc caccagttct aaagtcgtgt
1751 actccaacac tgggtgcatt acttactccc ttaacgacaa tacggaatac
1801 actttgtatg ataaagatgt ttttcctttc atagcccaca cattcggagg
1851 agtggacact cccaacgcca tacgaaaatt ttgttgctcc ttcgagctct
1901 gtcacacggc gttagcgacc ctcaaaccgt ctctttatga agggaagagg
1951 ttcactcgct taggaacccc gaaaggtaag gcatacttgg gagccgactt
2001 tctcaccggc actctaccga gttattctga acacgataga gcaataacac
2051 tccggtgctc ggagacggct ctcacgaaaa ctcccggaga tgatttcgcc
2101 atcgtgagtc tccgcgactt gggtcgcaga tcattagttt aacgatttgt
2151 gtctttttcg tccgtcgctc tgctgttgac tttccattga ctttgttgtg
2201 agactatcga aacttacaat ttctaagctc acgtagtctt cgcactttca
2251 gtttaactat taataagata tgggtgagtt caccgtgtcc gatctgaaag
2301 atatgcacgc cgctgatggc accactctct cagaagatac ctcgaataag
2351 ataatcgtcc cgctcatcgc tagggtcatg gaagccaatc ccggtttcga
2401 cgggaaaggt tcaaagatgc tgctagggat gattctctac aggctggctt
2451 tacgcaccac ctctcctaac gcgaccttca atgagcatga tgttaccaag
2501 tacaagattg atggcaagga tgtcaagttc aatgacgata tggtgttcac
2551 ctttatcgcc aatcacgagg ccatcccccc gggcactaag aaccctatca
2601 gagcgtgggg tcgttcgctt gatcagatgt atttgaaatt cgtgcggccg
2651 ttgaaaacta ttttggattt caaccagcgt tgcaacaaaa ttggtctgcc
2701 cgtaggttac gagtatttgt gcgccgattt cctcaccgga gtcggtttag
2751 ataaccacga agcagccata ctgaacctag ccagggctga ggctctcaag
2801 aaggaagtcg gtgatagtgg taattcgatc acctctataa agcagttagg
2851 tcgcttctcc acttagagat tgtcactcgg cgctccgctt gagtgttcta
2901 tattttaaag ttatggatgt tccttctgtc tccgacatag tcgtaccacg
2951 aggtccttac ttgtttcgca ttctttattt ttatcgcgaa cattgctacg
3001 gtatattctt tttatccgat cgcagtgatg gtgatgatct cggtgtactc
3051 aaagacatgg ccgtgactga tgataagaaa tacctgctca ccgatggcag
3101 taccttcgtc tctcaccccg atgcgttgcg aaacgctgat tactcggtca
3151 taagacacat cacttcgaat aagagaacgc acgtagccga cgcctcccag
3201 ctcgcaaaga tgtgtcgtcc cgagtc