Sequence of DPV Alternanthera yellow vein virus

Alternanthera yellow vein virus segment DNA-A, complete sequence

ACC No: FN432361

Dated: 2010-04-27 | Length: 2747 | CRC: -2016265434

                
ID   FN432361; SV 1; circular; genomic DNA; STD; VRL; 2747 BP.
XX
AC   FN432361;
XX
DT   27-APR-2010 (Rel. 104, Created)
DT   27-APR-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Alternanthera yellow vein virus segment DNA-A, complete sequence
XX
KW   .
XX
OS   Alternanthera yellow vein virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2747
RA   Tahir M.N.;
RT   ;
RL   Submitted (22-JUL-2009) to the EMBL/GenBank/DDBJ databases.
RL   Tahir M.N., Agricultural Biotechnology Division, National Institute for
RL   Biotechnology and Genetic Engineering, NIBGE, Jhang Road, Faisalabad,
RL   Punjab, 38000, PAKISTAN.
XX
RN   [2]
RA   Mubin M., Shahid M.S., Tahir M.N., Briddon R.W., Mansoor S.;
RT   "Characterization of begomovirus components from a weed suggests that
RT   begomoviruses may associate with multiple distinct DNA satellites";
RL   Virus Genes 40(3):452-457(2010).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2747
FT                   /organism="Alternanthera yellow vein virus"
FT                   /segment="DNA-A"
FT                   /host="Sonchus arvensis"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Faisalabad, Samundri"
FT                   /isolation_source="host leaf"
FT                   /identified_by="Muhammad Mubin"
FT                   /db_xref="taxon:337826"
FT   CDS             154. .498
FT                   /gene="AV2"
FT                   /product="precoat protein"
FT                   /protein_id="CBA10391.1"
FT                   /translation="MWDPLLNPFPQTVHGFRCMLSVKYLQVVEDTYAPDTLGADLIREL
FT                   IAVIRANNYVEACSRYDHFIKRLEGTSSSQLRQPYGSPCFCPPDCPCHSKTAVVEPPHV
FT                   SQAKVVPNVQ"
FT   CDS             314. .1087
FT                   /gene="AV1"
FT                   /product="capsid protein"
FT                   /protein_id="CBA10392.1"
FT                   /translation="MSKRAADMIISSSGSRVRRRLNFDSPMARRASAPRIVRATRRQQW
FT                   SSRPMYRKPRLYRMYSSPDVPYGCEGPCKVQSFEKEHDVSHTGTLSCVSDVTRGSGITH
FT                   RVGKRFCIKSIYIIGKIWMDENIKSKNHTNTVMFWLVRDRRPVTTPYGFGEAFNMYDNE
FT                   PSTATIKNDLRDRLQVLHRFSATVTGGQYASKEQAMIKRFWRINNHVVYNHQEKAAYEN
FT                   HTENALVLYMACTHASNPVYATLKIRMYFYDSVMN"
FT   CDS             complement(1536. .2621)
FT                   /gene="Rep"
FT                   /product="Rep protein"
FT                   /protein_id="CBA10393.1"
FT                   /translation="MRQPGQFRLNRKNLFLTYSQCPISKEQALQQILNTQTPVNKKFIR
FT                   VCRELHEDGNPHLHALVQFEGKFQLTNPRFFDLQSPNSSAQYHCFITDAKSSSDVKAYI
FT                   EKDGDILDWGTFQIDGRSARGGQQTANDAYARAINTGNKEQALDVIRELAPKDYVLQFH
FT                   NLNGNLERIFMPPTQEYISPFNCSSFDQVPEEIEEWAADNVMSAAARPWRPISIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHIDLSPRVYSNEAWYNIIDDVDPHYVKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKNIGLKNWALKNATFVTINQPL
FT                   YSGSHQSPAQASQEETSQTEG"
FT   CDS             complement(1229. .1633)
FT                   /gene="AC2"
FT                   /product="AC2 protein"
FT                   /protein_id="CBA10394.1"
FT                   /translation="MRPSSPSTSHCTQVRIKVQHRLAKRKPRRRRVDLRCGCSLYISID
FT                   CHNYGFTHRGVHHCSSGREWRVYLGNNHSPVFQDHQTRQQVIPTGTRHHHSSDTVQLQP
FT                   AEGFGDTQMFSDLPDLDSLTTSDIEFLKGL"
FT   CDS             complement(1084. .1488)
FT                   /gene="AC3"
FT                   /product="AC3 protein"
FT                   /protein_id="CBA10395.1"
FT                   /translation="MDSRTGEYITAAQAENGVYTWEITIPLYFKIIKHDSRSFLREHDI
FT                   ITVQIQFNYNLRKALGIHKCFLTCQIWTRLQPQTLSFLRVFKTQVMKYLDNLGVICLNN
FT                   VIRAINHVLWNALHHTLYVNFSHIIKFNIY"
FT   CDS             complement(2174. .2470)
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /protein_id="CBA10396.1"
FT                   /translation="MRMETLISMLLCNSRGNSNSRIRDSSTYSHPIPPPNTTASSPMLS
FT                   PVQTLRHTSRRMETYLTGVPSRLMEGLQEGDSRQQTMLTQEQLTQAIRNKLLM"
XX
SQ   Sequence 2747 BP; 693 A; 568 C; 642 G; 844 T; 0 other;

fn432361 Length: 2747  27-APR-2010  Type: N  Check: 6381  ..

       1  accgatggcc aaaaaaaaat ttatgtcggc cccacctggc agcttttgtc
      51  tgccactaga caatccggtc caatcagatt tcagtctgaa agcttaaata
     101  aaattggcgc gccctttaaa tgcttggccg ctacgtttag tgcgctgtgc
     151  actatgtggg atcctctttt gaacccgttt ccccagaccg tgcacggctt
     201  tcgttgcatg ctttctgtaa agtatttaca ggtcgttgaa gacacatacg
     251  ctcctgatac tttaggtgct gatttaatta gagagttaat tgcagtaatt
     301  agggccaata attatgtcga agcgtgcagc cgatatgatc atttcatcaa
     351  gcggctcgag ggtacgtcgt cgtctcaact tcgacagccc tatggctcgc
     401  cgtgcttctg ccccccggat tgtccgtgcc actcgaagac agcagtggtc
     451  gagccgcccc atgtatcgca agccaaggtt gtaccgaatg tacagtagcc
     501  ctgatgtgcc ttatggctgt gagggtccgt gtaaggtcca gtcatttgaa
     551  aaagaacatg acgttagtca tactggcacg ttgtcgtgtg tctctgatgt
     601  taccagaggt agtgggatta cgcatagagt agggaagcgt ttttgcatca
     651  agtcaattta catcataggg aagatatgga tggatgagaa cattaagtcc
     701  aagaatcata ctaacacggt catgttctgg ttagttaggg atcgccgccc
     751  agttacaacg ccttatggct ttggtgaggc gtttaatatg tatgacaatg
     801  agccctctac cgcaactatc aagaacgatc tgcgtgatcg tttgcaggtg
     851  ttacataggt tttctgccac agttactggg ggtcagtatg cgtctaagga
     901  gcaggctatg atcaagcgtt tctggaggat taacaaccat gttgtttaca
     951  accatcagga gaaggcagct tatgaaaatc atactgagaa tgcattagta
    1001  ttgtatatgg cttgtactca tgctagcaat cctgtgtatg ctacgctgaa
    1051  aattagaatg tatttctatg actctgtaat gaattaatat atattgaatt
    1101  ttattatatg actgaagttt acatacaaag tatggtgcaa tgcattccat
    1151  agtacatgat ttattgctct aattacattg ttaagacaaa ttacaccaag
    1201  attatctaaa tacttcataa cttgggtctt aaagaccctt aagaaactca
    1251  atgtctgagg ttgtaagcga gtccagatct ggcaagtcag aaaacatttg
    1301  tgtatcccca aagccttccg caggttgtag ttgaactgta tctgaactgt
    1351  gatgatgtcg tgttcccgta ggaatgacct gctgtcgtgt ttgatgatct
    1401  tgaaatacag gggaatggtt atttcccagg tatacacgcc attctctgcc
    1451  tgagctgcag tgatgtactc ccctgtgcgt gaatccatag ttgtgacagt
    1501  cgatggagat gtatagtgaa cagccgcaac gcagatcaac cctccgtctg
    1551  cgaggtttcc tcttggctag cctgtgctgg actttgatgc gaacctgagt
    1601  acagtggctg gttgatggtg acgaaggtcg cattctttag ggcccagttt
    1651  tttagaccta tgtttttctc ctcatcaagg aactctttat aggaggatgt
    1701  cggaccagga ttgcagagga agattgttgg gatcccgcct ttaatttgaa
    1751  cgggcttccc gtatttagta ttggactgcc aatccctttg ggcccccatg
    1801  aattccttga aatgtttcac gtaatgagga tctacatcgt ctattatgtt
    1851  ataccaggcc tcattgctgt aaaccctagg actaaggtca atatgaccac
    1901  ataggtaatt atgtggacct aatgatctag cccacattgt tttaccagtc
    1951  ctgctgtcac cttctatgac tatacttatt ggtctccagg gccgcgcagc
    2001  ggcagacatg acattgtctg cggcccattc ctcaatttcc tcagggacct
    2051  gatcaaacga tgaacaatta aaaggactaa tgtattcttg ggtgggaggc
    2101  atgaatatgc gctccagatt accatttaaa ttatgaaatt gtaatacata
    2151  atccttagga gctaactctc ttattacatc aagagcttgt tccttattgc
    2201  ctgtgttaat tgctcttgcg taagcatcgt ttgctgtctg ctgtccccct
    2251  cttgcagacc ttccatcaat ctggaaggta ccccagtcaa gtatgtctcc
    2301  atccttctcg atgtatgcct taacgtctga actggactta gcatcggtga
    2351  tgaagcagtg gtattgggcg gaggaattgg gtgactgtag gtcgaagaat
    2401  ctcggattcg tgagttggaa tttcccctcg aattgcacaa gagcatggag
    2451  atgagggttt ccatcctcat gtagttctct gcaaacccta atgaatttct
    2501  tgtttacagg ggtttgtgtg tttaggattt gctgtaatgc ctgttcttta
    2551  gagatagggc attgtgagta ggtgaggaag aggttttttc tatttaatct
    2601  aaattgccca ggctgacgca tgatgacgtt tgtttacacc cgatgggagc
    2651  tcttctaaaa ctctatgtca atgggtgtat aggtgtgtat tatatagtgg
    2701  ggatttttcc ggaataaaaa attttttttt ggccatcgtc taatatt