Sequence of DPV Alternanthera yellow vein virus
Alternanthera yellow vein virus segment DNA-A, complete sequence
ACC No: FN432361
Dated: 2010-04-27 | Length: 2747 | CRC: -2016265434
ID FN432361; SV 1; circular; genomic DNA; STD; VRL; 2747 BP. XX AC FN432361; XX DT 27-APR-2010 (Rel. 104, Created) DT 27-APR-2010 (Rel. 104, Last updated, Version 1) XX DE Alternanthera yellow vein virus segment DNA-A, complete sequence XX KW . XX OS Alternanthera yellow vein virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2747 RA Tahir M.N.; RT ; RL Submitted (22-JUL-2009) to the EMBL/GenBank/DDBJ databases. RL Tahir M.N., Agricultural Biotechnology Division, National Institute for RL Biotechnology and Genetic Engineering, NIBGE, Jhang Road, Faisalabad, RL Punjab, 38000, PAKISTAN. XX RN [2] RA Mubin M., Shahid M.S., Tahir M.N., Briddon R.W., Mansoor S.; RT "Characterization of begomovirus components from a weed suggests that RT begomoviruses may associate with multiple distinct DNA satellites"; RL Virus Genes 40(3):452-457(2010). XX FH Key Location/Qualifiers FH FT source 1. .2747 FT /organism="Alternanthera yellow vein virus" FT /segment="DNA-A" FT /host="Sonchus arvensis" FT /mol_type="genomic DNA" FT /country="Pakistan:Faisalabad, Samundri" FT /isolation_source="host leaf" FT /identified_by="Muhammad Mubin" FT /db_xref="taxon:337826" FT CDS 154. .498 FT /gene="AV2" FT /product="precoat protein" FT /protein_id="CBA10391.1" FT /translation="MWDPLLNPFPQTVHGFRCMLSVKYLQVVEDTYAPDTLGADLIREL FT IAVIRANNYVEACSRYDHFIKRLEGTSSSQLRQPYGSPCFCPPDCPCHSKTAVVEPPHV FT SQAKVVPNVQ" FT CDS 314. .1087 FT /gene="AV1" FT /product="capsid protein" FT /protein_id="CBA10392.1" FT /translation="MSKRAADMIISSSGSRVRRRLNFDSPMARRASAPRIVRATRRQQW FT SSRPMYRKPRLYRMYSSPDVPYGCEGPCKVQSFEKEHDVSHTGTLSCVSDVTRGSGITH FT RVGKRFCIKSIYIIGKIWMDENIKSKNHTNTVMFWLVRDRRPVTTPYGFGEAFNMYDNE FT PSTATIKNDLRDRLQVLHRFSATVTGGQYASKEQAMIKRFWRINNHVVYNHQEKAAYEN FT HTENALVLYMACTHASNPVYATLKIRMYFYDSVMN" FT CDS complement(1536. .2621) FT /gene="Rep" FT /product="Rep protein" FT /protein_id="CBA10393.1" FT /translation="MRQPGQFRLNRKNLFLTYSQCPISKEQALQQILNTQTPVNKKFIR FT VCRELHEDGNPHLHALVQFEGKFQLTNPRFFDLQSPNSSAQYHCFITDAKSSSDVKAYI FT EKDGDILDWGTFQIDGRSARGGQQTANDAYARAINTGNKEQALDVIRELAPKDYVLQFH FT NLNGNLERIFMPPTQEYISPFNCSSFDQVPEEIEEWAADNVMSAAARPWRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHIDLSPRVYSNEAWYNIIDDVDPHYVKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKNIGLKNWALKNATFVTINQPL FT YSGSHQSPAQASQEETSQTEG" FT CDS complement(1229. .1633) FT /gene="AC2" FT /product="AC2 protein" FT /protein_id="CBA10394.1" FT /translation="MRPSSPSTSHCTQVRIKVQHRLAKRKPRRRRVDLRCGCSLYISID FT CHNYGFTHRGVHHCSSGREWRVYLGNNHSPVFQDHQTRQQVIPTGTRHHHSSDTVQLQP FT AEGFGDTQMFSDLPDLDSLTTSDIEFLKGL" FT CDS complement(1084. .1488) FT /gene="AC3" FT /product="AC3 protein" FT /protein_id="CBA10395.1" FT /translation="MDSRTGEYITAAQAENGVYTWEITIPLYFKIIKHDSRSFLREHDI FT ITVQIQFNYNLRKALGIHKCFLTCQIWTRLQPQTLSFLRVFKTQVMKYLDNLGVICLNN FT VIRAINHVLWNALHHTLYVNFSHIIKFNIY" FT CDS complement(2174. .2470) FT /gene="AC4" FT /product="AC4 protein" FT /protein_id="CBA10396.1" FT /translation="MRMETLISMLLCNSRGNSNSRIRDSSTYSHPIPPPNTTASSPMLS FT PVQTLRHTSRRMETYLTGVPSRLMEGLQEGDSRQQTMLTQEQLTQAIRNKLLM" XX SQ Sequence 2747 BP; 693 A; 568 C; 642 G; 844 T; 0 other; fn432361 Length: 2747 27-APR-2010 Type: N Check: 6381 .. 1 accgatggcc aaaaaaaaat ttatgtcggc cccacctggc agcttttgtc 51 tgccactaga caatccggtc caatcagatt tcagtctgaa agcttaaata 101 aaattggcgc gccctttaaa tgcttggccg ctacgtttag tgcgctgtgc 151 actatgtggg atcctctttt gaacccgttt ccccagaccg tgcacggctt 201 tcgttgcatg ctttctgtaa agtatttaca ggtcgttgaa gacacatacg 251 ctcctgatac tttaggtgct gatttaatta gagagttaat tgcagtaatt 301 agggccaata attatgtcga agcgtgcagc cgatatgatc atttcatcaa 351 gcggctcgag ggtacgtcgt cgtctcaact tcgacagccc tatggctcgc 401 cgtgcttctg ccccccggat tgtccgtgcc actcgaagac agcagtggtc 451 gagccgcccc atgtatcgca agccaaggtt gtaccgaatg tacagtagcc 501 ctgatgtgcc ttatggctgt gagggtccgt gtaaggtcca gtcatttgaa 551 aaagaacatg acgttagtca tactggcacg ttgtcgtgtg tctctgatgt 601 taccagaggt agtgggatta cgcatagagt agggaagcgt ttttgcatca 651 agtcaattta catcataggg aagatatgga tggatgagaa cattaagtcc 701 aagaatcata ctaacacggt catgttctgg ttagttaggg atcgccgccc 751 agttacaacg ccttatggct ttggtgaggc gtttaatatg tatgacaatg 801 agccctctac cgcaactatc aagaacgatc tgcgtgatcg tttgcaggtg 851 ttacataggt tttctgccac agttactggg ggtcagtatg cgtctaagga 901 gcaggctatg atcaagcgtt tctggaggat taacaaccat gttgtttaca 951 accatcagga gaaggcagct tatgaaaatc atactgagaa tgcattagta 1001 ttgtatatgg cttgtactca tgctagcaat cctgtgtatg ctacgctgaa 1051 aattagaatg tatttctatg actctgtaat gaattaatat atattgaatt 1101 ttattatatg actgaagttt acatacaaag tatggtgcaa tgcattccat 1151 agtacatgat ttattgctct aattacattg ttaagacaaa ttacaccaag 1201 attatctaaa tacttcataa cttgggtctt aaagaccctt aagaaactca 1251 atgtctgagg ttgtaagcga gtccagatct ggcaagtcag aaaacatttg 1301 tgtatcccca aagccttccg caggttgtag ttgaactgta tctgaactgt 1351 gatgatgtcg tgttcccgta ggaatgacct gctgtcgtgt ttgatgatct 1401 tgaaatacag gggaatggtt atttcccagg tatacacgcc attctctgcc 1451 tgagctgcag tgatgtactc ccctgtgcgt gaatccatag ttgtgacagt 1501 cgatggagat gtatagtgaa cagccgcaac gcagatcaac cctccgtctg 1551 cgaggtttcc tcttggctag cctgtgctgg actttgatgc gaacctgagt 1601 acagtggctg gttgatggtg acgaaggtcg cattctttag ggcccagttt 1651 tttagaccta tgtttttctc ctcatcaagg aactctttat aggaggatgt 1701 cggaccagga ttgcagagga agattgttgg gatcccgcct ttaatttgaa 1751 cgggcttccc gtatttagta ttggactgcc aatccctttg ggcccccatg 1801 aattccttga aatgtttcac gtaatgagga tctacatcgt ctattatgtt 1851 ataccaggcc tcattgctgt aaaccctagg actaaggtca atatgaccac 1901 ataggtaatt atgtggacct aatgatctag cccacattgt tttaccagtc 1951 ctgctgtcac cttctatgac tatacttatt ggtctccagg gccgcgcagc 2001 ggcagacatg acattgtctg cggcccattc ctcaatttcc tcagggacct 2051 gatcaaacga tgaacaatta aaaggactaa tgtattcttg ggtgggaggc 2101 atgaatatgc gctccagatt accatttaaa ttatgaaatt gtaatacata 2151 atccttagga gctaactctc ttattacatc aagagcttgt tccttattgc 2201 ctgtgttaat tgctcttgcg taagcatcgt ttgctgtctg ctgtccccct 2251 cttgcagacc ttccatcaat ctggaaggta ccccagtcaa gtatgtctcc 2301 atccttctcg atgtatgcct taacgtctga actggactta gcatcggtga 2351 tgaagcagtg gtattgggcg gaggaattgg gtgactgtag gtcgaagaat 2401 ctcggattcg tgagttggaa tttcccctcg aattgcacaa gagcatggag 2451 atgagggttt ccatcctcat gtagttctct gcaaacccta atgaatttct 2501 tgtttacagg ggtttgtgtg tttaggattt gctgtaatgc ctgttcttta 2551 gagatagggc attgtgagta ggtgaggaag aggttttttc tatttaatct 2601 aaattgccca ggctgacgca tgatgacgtt tgtttacacc cgatgggagc 2651 tcttctaaaa ctctatgtca atgggtgtat aggtgtgtat tatatagtgg 2701 ggatttttcc ggaataaaaa attttttttt ggccatcgtc taatatt