Sequence of DPV East African cassava mosaic virus

East African cassava mosaic virus segment DNA-A, complete sequence, isolate EACMV-Ybi1[Cm]

ACC No: FN435280

Dated: 2010-11-10 | Length: 2799 | CRC: 552381724

                
ID   FN435280; SV 1; linear; genomic DNA; STD; VRL; 2799 BP.
XX
AC   FN435280;
XX
DT   07-JAN-2010 (Rel. 103, Created)
DT   10-NOV-2010 (Rel. 106, Last updated, Version 2)
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DE   East African cassava mosaic virus segment DNA-A, complete sequence, isolate
DE   EACMV-Ybi1[Cm]
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KW   .
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OS   East African cassava mosaic virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN   [1]
RP   1-2799
RA   MONDE G.;
RT   ;
RL   Submitted (30-JUL-2009) to the EMBL/GenBank/DDBJ databases.
RL   MONDE G., Unite de phytopathologie, Universite catholique de Louvain, 1348,
RL   Louvain-la-Neuve, BELGIUM.
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RN   [2]
RA   Monde G., Walangululu J., Winter S., Bragard C.;
RT   "Dual infection by cassava begomoviruses in two leguminous species
RT   (Fabaceae) in Yangambi, Northeastern Democratic Republic of Congo";
RL   Arch. Virol. 155(11):1865-1869(2010).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2799
FT                   /organism="East African cassava mosaic virus"
FT                   /segment="DNA-A"
FT                   /host="Centrosema pubescens"
FT                   /isolate="EACMV-Ybi1[Cm]"
FT                   /mol_type="genomic DNA"
FT                   /country="Democratic Republic of the Congo:Yangambi"
FT                   /isolation_source="host leaves"
FT                   /collected_by="MONDE Godefroid"
FT                   /collection_date="12-Nov-2008"
FT                   /identified_by="Monde Godefroid"
FT                   /db_xref="taxon:62079"
FT   CDS             complement(1247. .1654)
FT                   /gene="AC2"
FT                   /product="activator of transcription protein"
FT                   /db_xref="GOA:D2TGA1"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D2TGA1"
FT                   /protein_id="CBA13515.1"
FT                   /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT                   DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ
FT                   PSEGIGDSQVFSELQGLDDLTASDWSFLKSI"
FT   CDS             complement(2252. .2485)
FT                   /gene="AC4"
FT                   /product="symptom expression protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:Q2UZN6"
FT                   /protein_id="CBA13516.1"
FT                   /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNHR
FT                   PMSKLTLKREGNFLTLDFSKSMPEVQGGRANI"
XX
SQ   Sequence 2799 BP; 731 A; 551 C; 727 G; 790 T; 0 other;

fn435280 Length: 2799  10-NOV-2010  Type: N  Check: 5491  ..

       1  accggatggc cgcgcccgaa aaagcaggtg gaccgcacaa tgaccgcgcc
      51  cgtgaaagaa agtggtccct gcgcacttgt tttggtcggc cagtcatatt
     101  cacgcgtgaa attctagata tttgttgttt gtctttatag acttcgtcgc
     151  gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc
     201  cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa tacctgttac
     251  atatggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg
     301  gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag
     351  atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc
     401  gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
     451  aagcaaaata tgggccaaca ggcctatgta tcggaaaccc aagatgtaca
     501  gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag
     551  gtccagtcat ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa
     601  ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa
     651  agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat
     701  gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct
     751  tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat
     801  ttaacatgtt tgataatgag cccagtactg caacaattaa gaacgatttg
     851  agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg
     901  tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga
     951  atcatcacgt gacatataat catcaggagg cagggaagta tgagaatcac
    1001  acagagaatg cgttgttatt gtatatggca tgtacacatg cctcgaatcc
    1051  tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa
    1101  attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg
    1151  tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt
    1201  aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa
    1251  atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg
    1301  aagttcagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt
    1351  gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttc cctggcctct
    1401  tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat gtcccaggta
    1451  aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga
    1501  atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg
    1551  aggtctaccc gcctacgtct gacggccctg gtcttcgctg tgcggtgttg
    1601  gactttgatg ggcactagag aacaatggct cgtggagggc gatgaaggtg
    1651  gcattcttta aagcccaggc tttaagggat tggttctttt cctcgtccag
    1701  aaactcttta tatgatgatg ttggtcctgg attgcagagg aagatagtgg
    1751  gaatgccgcc tttaatttga attggcttcc cgtattttgt attgctttgc
    1801  cagtcccttt gggcccccat caattctttg aagtgtttga ggtagtgggg
    1851  gtcgacgtca tcaatgacgt tgtaccatgc gtcgtttgaa tataccttgg
    1901  gagacagatc caggtgtcca caaagataat tatggggtcc cagtgaacga
    1951  gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat
    2001  cggtctccat ggccgcgcag cgggactgca tatattttcg gatacccata
    2051  cctctatgtc ttctgggact tgtgtaaaag atgatgataa gaacggacta
    2101  acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat
    2151  gttatggaac tgtaaaaaaa aggactttgg atctttttct ttaataattt
    2201  gaagagcttc ggatttagac gaagcattca acgcgtctgc atatacctga
    2251  gctaaatgtt ggccctcccc ccttgcactt ctggcatcga cttggaaaag
    2301  tccagcgtca agaaattccc ctcccttttc aatgtaagct ttgacatcgg
    2351  acgatgattt agctccctga atgttcggat ggaaatgtgt tgatcgggat
    2401  ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc
    2451  gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc
    2501  tgctaaccct aatgaatttg atattcgtcg ggtacgaaag ggcttgtaat
    2551  tgggaaaggg cctcttcttt tgttaatgag catcggggat aggttatgaa
    2601  ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggctg
    2651  tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg
    2701  gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact
    2751  tccattcaaa atttgaattc cgaatattgg cggccatccg attaatatt