Sequence of DPV Beet black scorch virus

Beet black scorch virus complete genome, isolate Ir-Ksh1, genomic RNA

ACC No: FN543421

Dated: 2010-01-20 | Length: 3644 | CRC: -888221947

                
ID   FN543421; SV 2; linear; genomic RNA; STD; VRL; 3644 BP.
XX
AC   FN543421;
XX
DT   20-JAN-2010 (Rel. 103, Created)
DT   20-JAN-2010 (Rel. 103, Last updated, Version 1)
XX
DE   Beet black scorch virus complete genome, isolate Ir-Ksh1, genomic RNA
XX
KW   complete genome.
XX
OS   Beet black scorch virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC   Necrovirus.
XX
RN   [1]
RP   1-3644
RA   Mehrvar M.;
RT   ;
RL   Submitted (18-AUG-2009) to the EMBL/GenBank/DDBJ databases.
RL   Mehrvar M., Phytopathology (FYMY), UCL University, SE/AGRO:BAPA/FYMY, Croix
RL   du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM.
XX
RN   [2]
RA   Mehrvar M., Bragard C.;
RT   "Beet black scorch virus satellite is linked with a single 3' untranslated
RT   region and contain a partial Argonaute sequence";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .3644
FT                   /organism="Beet black scorch virus"
FT                   /host="Beta vulgaris"
FT                   /isolate="Ir-Ksh1"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran:Kermanshah, Dolah"
FT                   /collected_by="Mohsen Mehrvar"
FT                   /collection_date="Sep-2006"
FT                   /db_xref="taxon:196375"
FT   CDS             join(36. .644,648. .2210)
FT                   /ribosomal_slippage
FT                   /product="RNA-dependent RNA polymerase, p82"
FT                   /note="ORF2"
FT                   /note="produced by translational readthrough of ORF1"
FT                   /protein_id="CBH40100.1"
FT                   /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCTYGFY
FT                   RTFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT                   DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT                   VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGKGGLLCTSGFTTPTWRGNPE
FT                   GLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPTP
FT                   KPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERCQQAVESLAIRPIGVQ
FT                   DAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGGR
FT                   TVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGSD
FT                   RKTLAKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCATVHNYCSRL
FT                   GVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQTR
FT                   PVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSFF
FT                   MQFPLSAAPKTRSDMSIALQEDWKYKFNRTGCFRNLAPTPQSRYSFWRAFGVLPDEQIA
FT                   LENGFSRLSFDKLDQDIQEEVSLLQFSGA"
FT   CDS             36. .647
FT                   /product="RNA polymerase, p23"
FT                   /note="ORF1"
FT                   /protein_id="CBH40101.1"
FT                   /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCTYGFY
FT                   RTFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT                   DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT                   VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGK"
FT   CDS             2228. .2419
FT                   /product="7K protein A, p7a"
FT                   /note="ORF3"
FT                   /protein_id="CBH40102.1"
FT                   /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS
FT                   VSMTVVGENVEFTQHFHF"
FT   CDS             2421. .2618
FT                   /product="7K protein B, p7b"
FT                   /note="ORF4"
FT                   /protein_id="CBH40103.1"
FT                   /translation="MGTIYVVREEPSGFLVWAFVVAIVCIIGLLSYTPPERLNHSYHEN
FT                   NQKTQYITIGGASTSKVSTN"
FT   CDS             2434. .2577
FT                   /product="5K protein A, p5a"
FT                   /note="ORF5"
FT                   /protein_id="CBH40104.1"
FT                   /translation="MLFAKNPQGSSCGHSLLQLCVSSDSYRTPHLKDLTTLITKIIRRR
FT                   NT"
FT   CDS             2647. .3345
FT                   /product="coat protein, p25"
FT                   /note="ORF6"
FT                   /protein_id="CBH40105.1"
FT                   /translation="MAPKRNKGGRKIRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT
FT                   RVSNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYIPIVPT
FT                   TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTTGAVCI
FT                   DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE
FT                   LIEPIPAAIN"
FT   CDS             3410. .3547
FT                   /product="5K hypothetical protein B, p5"
FT                   /note="ORF7"
FT                   /protein_id="CBH40106.1"
FT                   /translation="MEDCLHDAGMLSHTVRYRCWILVNRLDRFGWFQTDVSLEIFIVLS
FT                   "
XX
SQ   Sequence 3644 BP; 914 A; 859 C; 934 G; 937 T; 0 other;

fn543421 Length: 3644  20-JAN-2010  Type: N  Check: 9748  ..

       1  aagaaaccta accagtttct cgttgatcag cgatcatgga ttctatcccg
      51  tacgtgatcc tgcgcatact tgattttatc tttcactcca tcttctttcc
     101  atcccttctc tttatcatca aacacaacac caccatccta tgggcttgtc
     151  tatgtaccta tgggttctac cgtactttcc gcctagtctt caagatcaag
     201  gttgaggtac acccagccac ccgtgctgtc tttaaggaca tggtcacccg
     251  tttccagcgg gagagtatgt tctcacccga cgatgaagtg cctgagggca
     301  tccctatcca cgaggacgta gaccttgtta gcgaccccac acacaaagat
     351  attaagaggg tccgagctag caggcgagtc tcatacgctg tgagggttgc
     401  tcatgtagcc aagtcaaagg tgggactact cgcgaacacc aaggcaaatg
     451  agctggtgta ttctcggctt tgtcgagatg agatggttac ccacggtgtg
     501  cgcccatcac acattgcgca tgcagtgccg ctcgctgtcg cggcctgctt
     551  tattccactg gacagtgatt tcttggcagc atcaattaga aactgccagg
     601  agatggaaga gcggagggcc gttttagggc cctcatatgg aaaataggga
     651  ggcctactct gcaccagcgg gtttaccaca ccaacttggc gtggtaatcc
     701  agagggtttg ctggtgaaga gaggaccacc tctggccaaa cccagaaaac
     751  tgtaccgttt ttctggattt gggactcata tacggtacgg agtgcacgat
     801  cactccttgg gcaatgttcg gaggggactt gtcgagcggc tattcatggt
     851  agagaccaag gatggtcttg ctccgacacc aaagcccacc cctggcgtgt
     901  atgccaagtt atcccggttc catgaccttg ttagtgctaa tctaacctcg
     951  accaccagat taacatacga gcaattcctc ggattttatt ctggtcgcaa
    1001  attggagagg tgccaacagg ctgtggagtc gttagcaatc cgccctatag
    1051  gggtccagga tgcttggctc agcacgttcg ttaaggctga aaaactcaac
    1101  atctcagcta aacccgaccc ggcacctagg gtcattcagc ccaggtcgcc
    1151  gcggtacaat gtggaggttg gacggttcct cagacatgct gaggaacatc
    1201  tgttcgatgc tattaaccgt gtgtatggtg gacggacagt attcaagggg
    1251  ttgaatgctg atcaggctgg catggagatg caagccatgt ggcaagaatt
    1301  tgacaatcct gtcggtattg gcatggacgc ctctcggttt gatcaacacg
    1351  tttccaagga ggcgttggag ttcgaacaca agatatggtt gtccatgtac
    1401  catggctctg acaggaaaac attggcaaag ctgttgggga tgcaaatcca
    1451  caatcgcggt cttgctagat gtcctgatgg ggaaatcagg tacacggttg
    1501  aagggtgtcg tatgtctgga gacattaaca cctcttccgg caactgttat
    1551  ataatgtgcg caactgtgca caattattgc agccggttgg gtgttaagag
    1601  gttcaggctt gccaacaatg gtgatgattg catgctagtc gtggaagcta
    1651  aggatgaagc gcgtgtaagg caagggctta ttgaatacta tagggagttg
    1701  ggattcacaa tgaaagtgga acccactgtc tatgaacttg agcatcttga
    1751  gttttgccaa acccgcccag tcctggttga tggggcttac agaatggtgc
    1801  gcaatctaca ccagggcatg tcgaaggacc tacactcctt gcatgatctt
    1851  ggaagtagga aagctgccga ggcatgggtc tcagcagttg gcagtggggg
    1901  acgagtgatg aatgacgggg tgcctgtact caagtcgttc tttatgcagt
    1951  ttcccctttc tgctgctcct aaaaccaggt ctgatatgag tatagcgttg
    2001  caggaagatt ggaaatacaa attcaatcgg actgggtgtt ttagaaattt
    2051  agcacccact ccacaatccc gctactcatt ttggcgtgca tttggagtgt
    2101  tgccagatga acagattgcc ctggaaaacg gattttctcg tctgagtttt
    2151  gataaactag accaggatat ccaggaggag gttagccttc tccagttttc
    2201  tggggcatga aaacctaacc acttttcatg gaacaacagc gtagtgaaca
    2251  gcgtcgtgaa cgtagggtga gaagcagatc ggaggacagg aagtctatgt
    2301  ctgatgtggg acagtctgca gtcaataggg aagcagacgt caagaaagac
    2351  atgggtccat cggtctctat gacggtggtg ggggagaacg tggagttcac
    2401  acaacatttc cacttctgaa atgggcacaa tctatgttgt tcgcgaagaa
    2451  ccctcagggt tcctcgtgtg ggcattcgtt gttgcaattg tgtgtatcat
    2501  cggactctta tcgtacaccc cacctgaaag acttaaccac tcttatcacg
    2551  aaaataatca gaagacgcaa tacataacta ttggaggagc atccactagt
    2601  aaggtttcca cgaactgaat ttactgcttt ctagtataga taataaatgg
    2651  cacctaaacg caacaaagga ggtaggaaga tccgcatgtc cgatgagacg
    2701  gtgcgagctc ctgctgctgg tggtgtgata caacgcacac ccggtattcc
    2751  cccacgtatt aggtccacca ctattggtac gcgagtatcc aacacagaat
    2801  tacttgctgg tgtcaatgtt gcagcagcag gtgcattttc tgtcgttgga
    2851  gccggtcttt tccctagcaa ccttggttgg cttaatggga ttgcttccaa
    2901  ttacagcaag tttagatggc tttctataaa gctcatctat attcccattg
    2951  tccctacaac cactgctggc gctatgacca tggctttatc atacgacccg
    3001  gctgatgcta cacctaccag cttccaacaa gtgcaacaga tgtataacag
    3051  cataactgca cctgtatggg ctggatttga tggagctact gttcagctat
    3101  tgggggatcg cccaacaact ggtgccgtgt gtatcgacgt tgatgtcaat
    3151  cgatttggat tcacatggta caggtacgca accttagccg ctatcacagc
    3201  actcactgca aacgacagga atctgtatat tcctagcgtt tgcaatgtgg
    3251  ctacttctgg cggatcagct gcgactaatg ttggcaactt aatgataaag
    3301  tacagcattg agctcattga gcccataccc gctgccatca attagacccc
    3351  acatcctggt gtggttaatc cagtgaaaaa tattaggaaa tccatgggat
    3401  tcacacccca tggaggattg cttgcatgat gcaggtatgc ttagtcacac
    3451  tgtgaggtat cgatgctgga tcctggtaaa caggcttgac aggtttgggt
    3501  ggttccaaac cgatgtatca ctcgagatat tcatagtact aagctagaaa
    3551  acatcatgcg tgcgcacacg gccggctacg tcctatcgta gtcgggggct
    3601  ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc