Sequence of DPV Beet black scorch virus
Beet black scorch virus, complete genome, isolate Ir-Ksh3
ACC No: FN543467
Dated: 2009-11-20 | Length: 3644 | CRC: -824364885
ID FN543467; SV 1; linear; genomic RNA; STD; VRL; 3644 BP. XX AC FN543467; XX DT 20-NOV-2009 (Rel. 102, Created) DT 20-NOV-2009 (Rel. 102, Last updated, Version 1) XX DE Beet black scorch virus, complete genome, isolate Ir-Ksh3 XX KW complete genome. XX OS Beet black scorch virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Necrovirus. XX RN [1] RP 1-3644 RA Mehrvar M.; RT ; RL Submitted (19-AUG-2009) to the EMBL/GenBank/DDBJ databases. RL Mehrvar M., Phytopathology (FYMY), UCL University, SE/AGRO:BAPA/FYMY, Croix RL du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM. XX RN [2] RA Mehrvar M., Bragard C.; RT "Iranian Beet black scorch virus is more diverse than anywhere else"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1. .3644 FT /organism="Beet black scorch virus" FT /isolate="Ir-Ksh3" FT /mol_type="genomic RNA" FT /country="Iran:Kermanshah, Islam Abad Gharb" FT /isolation_source="Beta vulgaris" FT /collected_by="Mohsen Mehrvar" FT /db_xref="taxon:196375" FT CDS join(36. .644,648. .2210) FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase, p82" FT /note="ORF2" FT /note="produced by translational readthrough of ORF1" FT /protein_id="CBA34980.1" FT /translation="MDSIPYVILRILNFVLYSIIFPSLLFFINHHTTILWACLCAYGFY FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAARVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCNEMEERRAVLGPSYGKGGLLCTSGFTTPTWRGNPE FT GLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPTP FT KPTPGVYAKLSRFHDLVSSNLTSTTRLTYEQFLGFYSGRKLERYQQAAESLAIRPIGVQ FT DAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEIGRFLRHAEEHLFDAINRVYGGR FT TVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHRIWLSMYHGAD FT RKVLSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSRL FT GVKRFRLANNGDDCMLVVESKDEARVRQGLIEYYRELGFTMKVEPTVYELEHIEFCQTR FT PVLVDGAYRMVRNLHQGMSKDLHSLHDLGSKKAAEAWVSAAGSGGRVMNDGVPVLKSFF FT KQFPLLSGPKTKSDMSIALQEDWKYKFNRTGCFKDLTPTPQSRYSFWRAFGVLPDEQIA FT LEKGFSRLSFDKLDQDIQEEVSLLQFSGA" FT CDS 36. .647 FT /product="RNA polymerase, p23" FT /note="ORF1" FT /protein_id="CBA34981.1" FT /translation="MDSIPYVILRILNFVLYSIIFPSLLFFINHHTTILWACLCAYGFY FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAARVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCNEMEERRAVLGPSYGK" FT CDS 2228. .2419 FT /product="7K protein A, p7a" FT /note="ORF3" FT /protein_id="CBA34982.1" FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2421. .2618 FT /product="7K protein B, p7b" FT /note="ORF4" FT /protein_id="CBA34983.1" FT /translation="MSTIYVVHEKPSGFLVWAFVVAIVCIIGHLSYTQPERLNHSYHEN FT NQKTQYITIGGASTSKVSMN" FT CDS 2434. .2577 FT /product="5K protein A, p5a" FT /note="ORF5" FT /protein_id="CBA34984.1" FT /translation="MLCMRSLRGFSCGHLLLQLCVSLDTYRTPNLKDLTTLITKTIRRR FT NT" FT CDS 2647. .3345 FT /product="coat protein, p25" FT /note="ORF6" FT /protein_id="CBA34985.1" FT /translation="MAPKRNKGSRKARMSDETVRAPAAGGVIQRTPGIPPRIRSTTFGT FT RVTNTELLAGINVSAGGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYVPIVPT FT TTAGAMTMALSYDPADATPASFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTTRAVCI FT DVDVDRFGFTWYRYATLAAINALTANDRNLYIPSVCNVATSGGTLATNVGNLMIKYSIE FT LIEPIPAAIN" FT CDS 2693. .2977 FT /product="10K hypothetical protein, p10" FT /note="ORF7" FT /protein_id="CBA34986.1" FT /translation="MRLYGLQLLEALYNAHPAFLHVLGPPPLVRVLPTLSCLLASMCQL FT VVLSQLLGLDCFPATLVGSMGLLQIIVSLGGSPSSLSMFPLSPQPRLGP" XX SQ Sequence 3644 BP; 897 A; 841 C; 950 G; 956 T; 0 other; fn543467 Length: 3644 20-NOV-2009 Type: N Check: 2975 .. 1 aagaaaccta accagtttct cgttgatcag tgatcatgga ttcaatcccg 51 tatgtgatcc tgcgcatact gaattttgtc ctttactcca tcatctttcc 101 ttcacttctc ttcttcatca accaccacac taccatccta tgggcatgtt 151 tgtgtgccta cggattctac cgcgcgtttc gcctcatctt caagattaag 201 gtcgaagtgc accctgccac tcgtgctgtc tttaatgata tggtcactcg 251 ctttcagcgg gagagcatgt tttcacctga cgacgaagtg cctgagggca 301 tccccatcca cgaggatgtt gaccttgtta gcgaccccac acacaaagat 351 attaagaggg tccgtgctag caggcgagtc tcatatgctg cgagggtagc 401 ccatgtagcc aagtcgaagg tgggattact cgccaacact aaggcaaatg 451 agctggtgta ctctcgattg tgtcgggatg agatggtgac gcacggtgtt 501 cgtccatcgc acatcgcaca tgcagtgccg ctggctgtcg cggcctgttt 551 tataccattg gacagtgact ttcttgcagc ttcaattaga aactgcaatg 601 agatggaaga gcggagggcc gttttagggc cctcatatgg aaaataggga 651 ggcctactct gcaccagcgg gtttaccaca ccgacttggc gtggtaatcc 701 agagggtttg ctggtgaaga gaggacctcc tctggccaaa cctagaaaat 751 tataccgttt ttccgggttt gggactcata tacggtatgg agtgcatgac 801 cactccctgg gcaatgttcg gaggggactt gttgagcgtc tgttcatggt 851 ggaaaccaag gacgggcttg ctccaacacc taagcccacc cctggcgtgt 901 atgccaagtt atcccggttt catgacctag tcagttccaa tctaacctcg 951 accaccagat tgacatacga gcagtttctc ggattttatt ctggtcgcaa 1001 attagaaagg taccagcagg ccgcggagtc gttagcaatc cgcccaatag 1051 gggtacagga tgcttggctt agcacgttcg tgaaggctga aaaattaaac 1101 atctcagcta aacccgaccc ggcacctagg gttattcagc ctaggtcgcc 1151 gaggtacaat gtggagatcg gacggttcct cagacatgct gaggaacatc 1201 tgttcgatgc tatcaatcgt gtgtatggtg ggcgcacagt gttcaaaggg 1251 ttgaacgctg atcaggctgg catggagatg caagccatgt ggcaagaatt 1301 tgacaatccc gttggtattg gcatggatgc ctcccggttc gaccaacacg 1351 tctcgaaaga ggcgttggag tttgaacaca ggatatggct atccatgtac 1401 catggagctg ataggaaggt gctgtcaaag cttttgggaa tgcaaattca 1451 caatcgcggt cttgccagat gccctgatgg ggagatcagg tacacggttg 1501 aagggtgtcg tatgtctggg gatattaaca cttcctctgg taactgttat 1551 ataatgtgtg catccgtaca caattattgc agtcggttgg gtgttaagcg 1601 gtttaggctt gccaataatg gtgacgattg catgcttgtg gtcgaatcca 1651 aggacgaagc acgtgtaagg cagggactca tcgagtatta cagggagcta 1701 gggttcacca tgaaggtaga acccactgtc tatgaactcg agcatattga 1751 gttttgccaa acacgcccag tccttgttga tggtgcttac agaatggtac 1801 gcaatcttca ccagggtatg tccaaggacc tacactcctt gcatgatctt 1851 ggtagcaaga aggctgctga ggcttgggtt tcagcagcgg ggagcggggg 1901 tcgcgtgatg aacgatggag taccagtgct caaatcgttt ttcaagcaat 1951 tccccttgct ctctggacct aaaaccaagt ccgatatgag tatagcgttg 2001 caggaagatt ggaaatacaa gttcaatcgg actgggtgtt tcaaggattt 2051 aacacccact ccacaatccc gctactcatt ttggcgtgcg tttggagtgt 2101 taccagatga acagatagcc ctggagaagg gattttctcg tcttagcttt 2151 gataagttgg accaggatat ccaggaggag gttagcctcc tccaattctc 2201 tggggcatga aaacctaacc acttttcatg gaacaacagc gtagtgaaca 2251 acgtcgtgaa cgtagagtga gaagtagatc ggaggacagg aagtcgatgt 2301 ctgatgtagg acagtctgct gtgaataggg aagcggatgt caagaaggat 2351 atgggtccat cggtctctat gacggtggtg ggggaaaacg tggagttcac 2401 acaacatttc cacttctgaa atgagcacca tttatgttgt gcatgagaag 2451 ccttcggggt ttctcgtgtg ggcatttgtt gttgcaattg tgtgtatcat 2501 tggacactta tcgtacaccc aacctgaaag acttaaccac tcttatcacg 2551 aaaacaatca gaagacgcaa tacataacta ttggaggagc atccactagt 2601 aaagtttcca tgaactgaat ttactgcttt ctagtatagt taataaatgg 2651 cacctaagcg taataaaggg agtaggaaag ctcgtatgtc cgatgagact 2701 gtacgggctc cagctgctgg aggcgttata caacgcacac ccggcattcc 2751 tccacgtatt aggtccacca cctttggtac gcgtgttacc aacactgagt 2801 tgcttgctgg catcaatgtg tcagctggtg gtgctttctc agttgttggg 2851 gctggactgt ttcccagcaa ccttggttgg ctcaatggga ttgcttcaaa 2901 ttatagtaag tttaggtggc tctccatcaa gcttatctat gttcccattg 2951 tccccacaac cacggctggg gccatgacta tggctttatc atacgatccc 3001 gctgatgcta cacccgccag cttccagcag gtgcaacaga tgtataacag 3051 catcactgca cctgtttggg ctggtttcga tggagctact gttcagctgt 3101 taggggatcg gccaacgacc agagctgtgt gtatcgatgt tgatgtcgac 3151 cggttcggtt tcacatggta taggtatgca acactcgctg ctattaacgc 3201 actcactgct aatgatagga atctatatat ccctagcgtt tgcaatgtgg 3251 ctacgagcgg cggaactctt gctaccaatg ttggcaattt aatgataaaa 3301 tacagtatag agcttatcga gcctataccc gctgccatta attagatccc 3351 acatcctggt gtggttaatc cagtgaagaa tattaggaaa tccttgggac 3401 tcacacccca aggaggattg cttgcatggt gcaggtatgt tgagttacac 3451 tgtgaggtat cgatgctgga tcctgggaaa caggcttgac aggtttgggt 3501 ggttccaaac cgctgcatca ctcgagatac tcacggtatt caacaaggaa 3551 acaccatgcg tgcgcacacg gctggctatg tcctatcata gccgggggct 3601 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc