Sequence of DPV Beet black scorch virus
Beet black scorch virus, complete genome, isolate Ir-Sh1
ACC No: FN543471
Dated: 2009-11-20 | Length: 3644 | CRC: 597429081
ID FN543471; SV 1; linear; genomic RNA; STD; VRL; 3644 BP. XX AC FN543471; XX DT 20-NOV-2009 (Rel. 102, Created) DT 20-NOV-2009 (Rel. 102, Last updated, Version 1) XX DE Beet black scorch virus, complete genome, isolate Ir-Sh1 XX KW complete genome. XX OS Beet black scorch virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Necrovirus. XX RN [1] RP 1-3644 RA Mehrvar M.; RT ; RL Submitted (19-AUG-2009) to the EMBL/GenBank/DDBJ databases. RL Mehrvar M., Phytopathology (FYMY), UCL University, SE/AGRO:BAPA/FYMY, Croix RL du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM. XX RN [2] RA Mehrvar M., Bragard C.; RT "Iranian Beet black scorch virus is more diverse than anywhere else"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1. .3644 FT /organism="Beet black scorch virus" FT /isolate="Ir-Sh1" FT /mol_type="genomic RNA" FT /country="Iran:Khorasan Shomali, Shirvan" FT /isolation_source="Beta vulgaris" FT /collected_by="Mohsen Mehrvar" FT /db_xref="taxon:196375" FT CDS join(36. .644,648. .2210) FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase, p82" FT /note="ORF2" FT /note="produced by translational readthrough of ORF1" FT /protein_id="CBA35009.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGKGGLLCTSGFTTPTWRGNPE FT GLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPTP FT KPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGVQ FT DAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGGR FT TVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGSD FT RKTLAKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCATVHNYCSRL FT GVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQTR FT PVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSFF FT MQFPLSAAPKTKSDMSIALQEDWKYKFNRTGCFRNLAPTPQSRYSFWRAFGVLPDEQIA FT LENGFSRLSFDKLDQDIQEEVSLLQFSGA" FT CDS 36. .647 FT /product="RNA polymerase, p23" FT /note="ORF1" FT /protein_id="CBA35010.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGK" FT CDS 2228. .2419 FT /product="7K protein A, p7a" FT /note="ORF3" FT /protein_id="CBA35011.1" FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2421. .2618 FT /product="7K protein B, p7b" FT /note="ORF4" FT /protein_id="CBA35012.1" FT /translation="MGTVYVVREEPSGFLVWAFVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGASTSKVSTN" FT CDS 2434. .2577 FT /product="5K protein A, p5a" FT /note="ORF5" FT /protein_id="CBA35013.1" FT /translation="MLFAKNPQGSSCGHSLLQLCVSLDSYRTPHLKDLTTLITKIIRRR FT NT" FT CDS 2647. .3345 FT /product="coat protein, p25" FT /note="ORF6" FT /protein_id="CBA35014.1" FT /translation="MAPKRNKGGRKTRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT FT RVSNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYIPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTIGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE FT LIEPIPAAIN" FT CDS 3410. .3547 FT /product="5K hypothetical protein B, p5b" FT /note="ORF7" FT /protein_id="CBA35015.1" FT /translation="MEDCLHDAGMFSHTVRYRCWILVNRLDRFGWFQTDVSLEIFIVLS FT " XX SQ Sequence 3644 BP; 914 A; 853 C; 935 G; 942 T; 0 other; fn543471 Length: 3644 20-NOV-2009 Type: N Check: 2868 .. 1 aagaaaccta accagtttct cgttgatcag cgatcatgga ttctatcccg 51 tatgtgatcc tgcgcatact tgattttatc tttcactcca tcttctttcc 101 atcccttctc tttatcatca aacacaacac caccatccta tgggcttgtc 151 tatgtgccta tgggttctac cgtgctttcc gccttgtttt caagatcaag 201 gttgaggtac atccagccac ccgtgctgtc tttaaggaca tggtcacccg 251 tttccagcgg gagagtatgt tctcgcctga cgatgaagtg cctgagggca 301 tccctatcca cgaggacgta gaccttgtta gcgaccccac acacaaagat 351 attaagaggg tccgagctag caggcgagtc tcatacgctg tgagggttgc 401 tcatgtagcc aagtcaaagg tgggactact tgcaaatacc aaggcaaatg 451 agctggtgta ttctcggctt tgtcgagatg agatggtcac ccacggtgtg 501 cgcccatcac acattgcgca tgcagtgccg ctcgctgtcg cggcctgttt 551 tatcccattg gacagtgatt tcttggcagc atcaattaga aactgccagg 601 agatggaaga gcggagggcc gttttggggc cctcatatgg aaaataggga 651 ggcctactct gcaccagcgg gtttaccaca ccaacttggc gtggtaatcc 701 agagggtttg ctggtgaaga gaggaccacc tctggccaaa cctagaaaac 751 tgtaccgttt ttctggattt gggactcata tacggtacgg agtgcacgat 801 cactccttgg gcaatgttcg gaggggactt gtcgagcggc tattcatggt 851 agagaccaaa gatggccttg ctccgacacc aaagcccacc cctggcgtgt 901 atgccaagtt atcccggttc catgaccttg ttagtgccaa tctaacctcg 951 accaccagat taacatacga gcaatttctc gggttttatt ctggtcgcaa 1001 attggagagg taccaacagg ctgtggagtc gttagcaatc cgccctatag 1051 gggtccagga tgcttggctt agcacgttcg ttaaggctga aaaactcaac 1101 atttcagcta aacccgaccc ggcacctagg gtcattcagc ctaggtcgcc 1151 gcggtacaat gtggaggttg gacggttcct cagacatgct gaggaacatc 1201 tgttcgatgc cattaaccgt gtgtatggtg gacggacagt attcaagggg 1251 ttgaatgctg atcaggctgg catggagatg caagccatgt ggcaagagtt 1301 tgacaatcct gtcggcattg gcatggacgc ctctcggttt gatcaacacg 1351 tttccaagga ggcgttggag ttcgaacaca agatatggtt gtccatgtac 1401 catggctctg acaggaaaac attggcaaag ctgttgggga tgcaaatcca 1451 caatcgcggt cttgctagat gtcctgatgg ggaaatcagg tacacggttg 1501 aagggtgtcg tatgtctgga gatatcaaca cctcttccgg caactgttat 1551 ataatgtgtg caactgtgca caattattgc agccggttgg gtgttaagag 1601 gttcaggctt gccaataatg gtgatgattg catgctagtc gtggaagcta 1651 aggatgaagc gcgtgtaagg caagggctta ttgaatacta tagggagttg 1701 ggattcacaa tgaaagtgga acccactgtc tacgaacttg agcatcttga 1751 gttttgccaa acccgcccag tcctggttga tggggcttac agaatggtgc 1801 gcaatctaca ccagggcatg tcgaaggacc tacactcctt gcatgatctt 1851 ggaagtagga aagctgccga ggcatgggtc tcagcagttg gcagtggggg 1901 acgagtgatg aatgacgggg tgcctgtact taagtcgttc ttcatgcagt 1951 ttcccctatc tgctgctccc aaaaccaagt ctgatatgag tatagcgttg 2001 caggaagatt ggaaatacaa attcaatcgg actgggtgtt tcagaaattt 2051 agcacccact ccacaatccc gctactcatt ttggcgtgca tttggagtgt 2101 tgccagatga acagattgcc ctggaaaacg gattttctcg tctaagtttt 2151 gacaaactag accaggatat ccaggaggag gttagccttc tccagttctc 2201 tggggcatga aaacctaacc aattttcatg gaacaacagc gtagtgaaca 2251 gcgtcgtgaa cgtagggtga gaagcagatc ggaggacagg aagtctatgt 2301 ctgatgtggg acagtctgca gttaataggg aagcagacgt caagaaagac 2351 atgggtccat cggtctctat gacggtggtg ggggagaacg tggagttcac 2401 acaacatttc cacttctgaa atgggcacag tctatgttgt tcgcgaagaa 2451 ccctcagggt tcctcgtgtg ggcattcgtt gttgcaattg tgtgtatcat 2501 tggactccta tcgtacaccc cacctgaaag acttaaccac tcttatcacg 2551 aaaataatca gaagacgcaa tacataacta ttggaggagc atccactagt 2601 aaggtttcca cgaactgaat ttactgcttt ctagtataga taataaatgg 2651 cacctaaacg caacaaagga ggtaggaaga cccgcatgtc cgatgagacg 2701 gtgcgagctc ctgccgctgg aggtgtgata caacgcacac ccggtatccc 2751 tccacgtatt aggtccacca ctattggtac gcgagtatcc aacacagaat 2801 tgcttgctgg tgtcaatgtt gcagcagcag gtgcattttc tgtcgttgga 2851 gccggtcttt tccccagtaa ccttggttgg ctcaatggga ttgcttccaa 2901 ctacagcaag tttagatggc tttctataaa gctcatctat attcccattg 2951 tccctacaac cactgctggc gctatgacca tggctttatc atacgacccg 3001 gctgatgcta cacctaccag cttccaacaa gtgcaacaaa tgtataacag 3051 cataactgca cctgtgtggg ctggatttga tggagctact gttcagctat 3101 taggggatcg cccaacaatt ggtgccgtgt gtatcgatgt tgatgtcaat 3151 cgatttggat tcacatggta caggtacgca accttagccg ctattacagc 3201 actcactgca aacgacagga atctatacat tcctagcgtt tgcaatgtgg 3251 ctacttctgg cggatctgct gcgactaatg ttggcaactt aatgataaag 3301 tacagcattg agctcattga gcccataccc gctgccatca attagatccc 3351 acatcctggt gtggttaatc cagtgaaaaa tattaggaaa tccatggaat 3401 tcacacccca tggaggattg cttgcatgat gcaggtatgt ttagtcacac 3451 tgtgaggtat cgatgctgga tcctggtaaa caggcttgac aggtttgggt 3501 ggttccaaac cgatgtatca ctcgagatat tcatagtact aagctagaaa 3551 acatcatgcg tgcgcacacg gccggctacg tcctatcgtg gccgggggct 3601 ccggagtgcg aaaccctctt atatacctgg ttttccaggt gccc