Sequence of DPV Cotton leaf curl Gezira virus
Cotton leaf curl Gezira virus-[okra:BFA] segment DNA-A, isolate BF:Kampala:Okra4
ACC No: FN554524
Dated: 2010-04-07 | Length: 2762 | CRC: 380092638
ID FN554524; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC FN554524; XX DT 25-NOV-2009 (Rel. 102, Created) DT 07-APR-2010 (Rel. 104, Last updated, Version 2) XX DE Cotton leaf curl Gezira virus-[okra:BFA] segment DNA-A, isolate DE BF:Kampala:Okra4 XX KW . XX OS Cotton leaf curl Gezira virus-[okra:BFA] OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RA Tiendrebeogo F.; RT ; RL Submitted (25-SEP-2009) to the EMBL/GenBank/DDBJ databases. RL Tiendrebeogo F., CRSBAN/UFR/SVT Universite de Ouagadougou, RL Biochimie-Microbiologie, 03 BP 7131 Ouagadougou 03, Ouagadougou, BURKINA RL FASO. XX RN [2] RA Tiendrebeogo F., Lefeuvre P., Hoareau M., Villemot J., Konate G., RA Traore A.S., Barro N., Traore V.S., Reynaud B., Traore O., Lett J.M.; RT "Molecular diversity of cotton leaf curl Gezira virus isolates and their RT satellite DNAs associated with okra leaf curl disease in Burkina Faso"; RL Virol. J. 7:48-48(2010). XX FH Key Location/Qualifiers FH FT source 1. .2762 FT /organism="Cotton leaf curl Gezira virus-[okra:BFA]" FT /segment="DNA-A" FT /host="Abelmoshus esculentus" FT /isolate="BF:Kampala:Okra4" FT /mol_type="genomic DNA" FT /country="Burkina Faso:Kampala" FT /collected_by="Edgar V.S. Traore" FT /collection_date="10-Oct-2008" FT /db_xref="taxon:679314" FT CDS 161. .529 FT /gene="V2" FT /product="movement protein (MP)" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D1GZ42" FT /protein_id="CBG22911.1" FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDL FT IGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRVVLCTCPHCPRHKQTSGLDQQAHV FT QKTEDVQNVSQPRCPKGM" FT CDS 321. .1097 FT /gene="CP" FT /product="coat protein (CP)" FT /db_xref="GOA:D1GZ43" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D1GZ43" FT /protein_id="CBG22912.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAW FT TNRPTYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGVGLTH FT RTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPLDFGQVFNMFDN FT EPSTATVKNDLRDHFQVLRKFTATVIGGPSGMKEQALVRRFFRINSQIVYNHQEAGKFE FT NHTENAILLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1094. .1495) FT /gene="C3" FT /product="replication enhancer protein (REn)" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D1GZ44" FT /protein_id="CBG22913.1" FT /translation="MDSRTGELITAHQSENGVLIWTINNPLYFKTIKEFRLTHGNQTMI FT EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRLGVISINNV FT IRAVNHVLYDVLQTTVESEFTHNIQIKLY" FT CDS complement(1239. .1643) FT /gene="C2" FT /product="transcription activator protein (TrAP)" FT /db_xref="GOA:D1GZ75" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D1GZ75" FT /protein_id="CBG22914.1" FT /translation="MRPSSLSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF FT TCRDNGFTHRGTHHCASEREWRTYLDNQQSPVFQNHQGVSSNARESNNDRDADKIQLQP FT QEGIGDSQMFHELPGLDDLTPSDWSFLKRI" FT CDS complement(1543. .2631) FT /gene="C1" FT /product="replication associated protein (Rep)" FT /db_xref="GOA:D1GZ76" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="UniProtKB/TrEMBL:D1GZ76" FT /protein_id="CBG22915.1" FT /translation="MPPSKRFLINAKNYFLTFPKCSLTKEEALEQLQKISTASNKKYIK FT ICRELHEDGQPHLHVLLQFEGKFKCQNHRLFDLVSPNRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKTEALRVIRELAPKDFVLQFH FT NLNSNLERIFQEPPAPYVSPFLSSSFDQVPEELEEWAAENVVEAAARPDRPISIVIEGE FT SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNAHLKSWALKNATFITLSNPL FT YSGTNQSPASGGEEESNQETQD" FT CDS complement(2172. .2474) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D1GZ47" FT /protein_id="CBG22916.1" FT /translation="MANLISMCFSSSKGSSNAKIIDSSTWYPQIGQHISIQTFRELNRA FT PTSSPTSTRMETHSSGENSRSTEDLQEGDNRQPMTLTPQRLTQEVRQRLLELYGN" XX SQ Sequence 2762 BP; 692 A; 623 C; 610 G; 837 T; 0 other; fn554524 Length: 2762 07-APR-2010 Type: N Check: 3114 .. 1 accggtgggc gcgaaaaaaa aagtggaccc cgccccacgt gaacatgtcg 51 cgcgagtggt gaacatgtcg cgcgatgctg tccaatcaga acgcgcgctc 101 tacgcattat aatttgaaat ttgaaatata tacttgctcc ccaagttgtc 151 cgccataact atgtgggatc cgttattgaa cgacttccct gaatccgttc 201 acggtttccg ttgtatgctc gccgtgaaat atttgcaggc tgttcgtgag 251 tcgtacgatc cttccaccct tggttacgat cttctaagcg atctcatcgg 301 agttgttcgt cgtaccaact atgtcgaagc gaccagcaga tatcatcatt 351 tccactcccg cctcgaaagt gcgtcgccgt ctgaacttcg acagcccagg 401 gttgtcctct gcacgtgccc ccactgtcct cgtcacaaac aaacgtcggg 451 cctggaccaa caggcccacg tacagaaaac cgaggatgta cagaatgtat 501 cgcagcccag atgtcccaaa gggatgtgaa ggtccctgta aggtccagtc 551 ttatgaacag cgtgatgatg tcaagcatac gggtattgtc cgatgtgtgt 601 ccgatgttac taagggggtt ggtcttaccc atcgtactgg aaagcgtttc 651 actatcaaat ccatttatat ccttggtaag gtatggatgg atgacaacat 701 taagaagcag aatcacacca acaatgttat gtttttcctt gtccgtgata 751 gaagaccgta tgggaattcc ccgttggatt ttggtcaagt tttcaacatg 801 tttgacaacg aacctagcac tgctactgtg aagaacgatc tccgtgatca 851 ttttcaggta ttgaggaagt ttactgcaac tgttattggt ggaccttcag 901 gaatgaaaga acaagccctt gttcgtcgtt ttttcaggat taatagtcag 951 attgtttata atcatcaaga ggctggtaaa ttcgagaatc atacggagaa 1001 tgctatattg ttgtatatgg catgtactca tgcctcaaac cctgtgtatg 1051 ctacgttaaa gatacggatc tacttctacg attcggtatc taattaatat 1101 aattttattt gaatattgtg cgtgaattca ctttccacag ttgtttgcaa 1151 tacatcgtac aaaacatgat tgactgccct aattacattg ttaattgaaa 1201 ttacacctaa tctatacaaa tatttcataa tctgcttcct aaatacgttt 1251 aagaaaagac cagtcggagg gcgtgagatc gtccagaccc ggaagttcat 1301 gaaacatttg tgaatcccca attccttcct gaggttgtag ttgaatctta 1351 tctgcatctc tatcattgtt tgattcccgt gcgttagacg aaactccttg 1401 atggttttga aatacagggg attgttgatt gtccagataa gtacgccatt 1451 ctcgctctga tgcgcagtga tgagttcccc tgtgcgtgaa tccattgtct 1501 ctgcacgtga aggctacgta taccgtgcaa ccacaaggga tgtcaatcct 1551 gcgtctcctg attgctctct tcttcgcctc ccgatgctgg actttgattg 1601 gtacctgagt acagcggatt tgagagagtg atgaaggtcg cattctttaa 1651 tgcccaggat ttgagatgcg cgtttttctc ctcgtctaaa tactctttat 1701 aggaggaatt gggacctgga ttgcagagga agattgttgg gatgcctcct 1751 ttaatttgaa ctggcttccc gtatttcgtg ttgctttgcc agtccttttg 1801 tgcacccatg aattccttaa agtgtttcag ataatgcggg tcaacatcat 1851 ctatgacgtt ataccatgcg tcattactga acacctttgg gcttagatca 1901 agatggccgc acaaataatt gtgaggccca agacttctgg cccatacggt 1951 cttccctgtt ctgctttccc cttcaatcac tatactaatc ggtctatctg 2001 gccgcgcagc ggcctcaacc acgttctccg ccgcccattc ttcaagttct 2051 tctggaactt ggtcgaaaga agaagacaaa aaaggagaaa cataaggagc 2101 tggaggctcc tgaaaaatcc tctctaaatt actatttaaa ttatgaaatt 2151 gtaaaacaaa atctttggga gctaattccc gtataactct aagagcctct 2201 gtcttacttc ctgcgttaag cgctgcggcg taagcgtcat tggctgtctg 2251 ttgtccccct cttgcagatc ttccgtcgat ctggaattct ccccactcga 2301 gtgtgtctcc atccttgtcg atgtaggact tgacgtcgga gctcgattta 2351 gctccctgaa tgtttggatg gaaatgtgct gacctatttg gggataccag 2401 gtcgaagagt ctatgatttt ggcatttgaa cttcccttcg aactggagaa 2451 gcacatggag atgaggttgg ccatcctcgt gaagctctct gcagatcttg 2501 atatactttt tgtttgaagc tgtgctgatt ttctgtagtt gttctagtgc 2551 ttcttcttta gtgagagaac attttgggaa agtcaggaaa taattctttg 2601 catttattag aaagcgttta gagggtggca ttgacttggt caatcgggtc 2651 tcagatactt ctcccctgta tattgggtct caatatatag tgagacccaa 2701 atggcattat ggtaataatc ccaacaaatt tgaaccccca tagcgcccac 2751 cgttctaata tt