Sequence of DPV Cotton leaf curl Gezira virus

Cotton leaf curl Gezira virus-[okra:BFA] segment DNA-A, isolate BF:Kampala:Okra4

ACC No: FN554524

Dated: 2010-04-07 | Length: 2762 | CRC: 380092638

                
ID   FN554524; SV 1; circular; genomic DNA; STD; VRL; 2762 BP.
XX
AC   FN554524;
XX
DT   25-NOV-2009 (Rel. 102, Created)
DT   07-APR-2010 (Rel. 104, Last updated, Version 2)
XX
DE   Cotton leaf curl Gezira virus-[okra:BFA] segment DNA-A, isolate
DE   BF:Kampala:Okra4
XX
KW   .
XX
OS   Cotton leaf curl Gezira virus-[okra:BFA]
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2762
RA   Tiendrebeogo F.;
RT   ;
RL   Submitted (25-SEP-2009) to the EMBL/GenBank/DDBJ databases.
RL   Tiendrebeogo F., CRSBAN/UFR/SVT Universite de Ouagadougou,
RL   Biochimie-Microbiologie, 03 BP 7131 Ouagadougou 03, Ouagadougou, BURKINA
RL   FASO.
XX
RN   [2]
RA   Tiendrebeogo F., Lefeuvre P., Hoareau M., Villemot J., Konate G.,
RA   Traore A.S., Barro N., Traore V.S., Reynaud B., Traore O., Lett J.M.;
RT   "Molecular diversity of cotton leaf curl Gezira virus isolates and their
RT   satellite DNAs associated with okra leaf curl disease in Burkina Faso";
RL   Virol. J. 7:48-48(2010).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2762
FT                   /organism="Cotton leaf curl Gezira virus-[okra:BFA]"
FT                   /segment="DNA-A"
FT                   /host="Abelmoshus esculentus"
FT                   /isolate="BF:Kampala:Okra4"
FT                   /mol_type="genomic DNA"
FT                   /country="Burkina Faso:Kampala"
FT                   /collected_by="Edgar V.S. Traore"
FT                   /collection_date="10-Oct-2008"
FT                   /db_xref="taxon:679314"
FT   CDS             161. .529
FT                   /gene="V2"
FT                   /product="movement protein (MP)"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:D1GZ42"
FT                   /protein_id="CBG22911.1"
FT                   /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDL
FT                   IGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRVVLCTCPHCPRHKQTSGLDQQAHV
FT                   QKTEDVQNVSQPRCPKGM"
FT   CDS             321. .1097
FT                   /gene="CP"
FT                   /product="coat protein (CP)"
FT                   /db_xref="GOA:D1GZ43"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:D1GZ43"
FT                   /protein_id="CBG22912.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAW
FT                   TNRPTYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGVGLTH
FT                   RTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPLDFGQVFNMFDN
FT                   EPSTATVKNDLRDHFQVLRKFTATVIGGPSGMKEQALVRRFFRINSQIVYNHQEAGKFE
FT                   NHTENAILLYMACTHASNPVYATLKIRIYFYDSVSN"
FT   CDS             complement(1094. .1495)
FT                   /gene="C3"
FT                   /product="replication enhancer protein (REn)"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D1GZ44"
FT                   /protein_id="CBG22913.1"
FT                   /translation="MDSRTGELITAHQSENGVLIWTINNPLYFKTIKEFRLTHGNQTMI
FT                   EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRLGVISINNV
FT                   IRAVNHVLYDVLQTTVESEFTHNIQIKLY"
FT   CDS             complement(1239. .1643)
FT                   /gene="C2"
FT                   /product="transcription activator protein (TrAP)"
FT                   /db_xref="GOA:D1GZ75"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D1GZ75"
FT                   /protein_id="CBG22914.1"
FT                   /translation="MRPSSLSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF
FT                   TCRDNGFTHRGTHHCASEREWRTYLDNQQSPVFQNHQGVSSNARESNNDRDADKIQLQP
FT                   QEGIGDSQMFHELPGLDDLTPSDWSFLKRI"
FT   CDS             complement(1543. .2631)
FT                   /gene="C1"
FT                   /product="replication associated protein (Rep)"
FT                   /db_xref="GOA:D1GZ76"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProtKB/TrEMBL:D1GZ76"
FT                   /protein_id="CBG22915.1"
FT                   /translation="MPPSKRFLINAKNYFLTFPKCSLTKEEALEQLQKISTASNKKYIK
FT                   ICRELHEDGQPHLHVLLQFEGKFKCQNHRLFDLVSPNRSAHFHPNIQGAKSSSDVKSYI
FT                   DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKTEALRVIRELAPKDFVLQFH
FT                   NLNSNLERIFQEPPAPYVSPFLSSSFDQVPEELEEWAAENVVEAAARPDRPISIVIEGE
FT                   SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNAHLKSWALKNATFITLSNPL
FT                   YSGTNQSPASGGEEESNQETQD"
FT   CDS             complement(2172. .2474)
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:D1GZ47"
FT                   /protein_id="CBG22916.1"
FT                   /translation="MANLISMCFSSSKGSSNAKIIDSSTWYPQIGQHISIQTFRELNRA
FT                   PTSSPTSTRMETHSSGENSRSTEDLQEGDNRQPMTLTPQRLTQEVRQRLLELYGN"
XX
SQ   Sequence 2762 BP; 692 A; 623 C; 610 G; 837 T; 0 other;

fn554524 Length: 2762  07-APR-2010  Type: N  Check: 3114  ..

       1  accggtgggc gcgaaaaaaa aagtggaccc cgccccacgt gaacatgtcg
      51  cgcgagtggt gaacatgtcg cgcgatgctg tccaatcaga acgcgcgctc
     101  tacgcattat aatttgaaat ttgaaatata tacttgctcc ccaagttgtc
     151  cgccataact atgtgggatc cgttattgaa cgacttccct gaatccgttc
     201  acggtttccg ttgtatgctc gccgtgaaat atttgcaggc tgttcgtgag
     251  tcgtacgatc cttccaccct tggttacgat cttctaagcg atctcatcgg
     301  agttgttcgt cgtaccaact atgtcgaagc gaccagcaga tatcatcatt
     351  tccactcccg cctcgaaagt gcgtcgccgt ctgaacttcg acagcccagg
     401  gttgtcctct gcacgtgccc ccactgtcct cgtcacaaac aaacgtcggg
     451  cctggaccaa caggcccacg tacagaaaac cgaggatgta cagaatgtat
     501  cgcagcccag atgtcccaaa gggatgtgaa ggtccctgta aggtccagtc
     551  ttatgaacag cgtgatgatg tcaagcatac gggtattgtc cgatgtgtgt
     601  ccgatgttac taagggggtt ggtcttaccc atcgtactgg aaagcgtttc
     651  actatcaaat ccatttatat ccttggtaag gtatggatgg atgacaacat
     701  taagaagcag aatcacacca acaatgttat gtttttcctt gtccgtgata
     751  gaagaccgta tgggaattcc ccgttggatt ttggtcaagt tttcaacatg
     801  tttgacaacg aacctagcac tgctactgtg aagaacgatc tccgtgatca
     851  ttttcaggta ttgaggaagt ttactgcaac tgttattggt ggaccttcag
     901  gaatgaaaga acaagccctt gttcgtcgtt ttttcaggat taatagtcag
     951  attgtttata atcatcaaga ggctggtaaa ttcgagaatc atacggagaa
    1001  tgctatattg ttgtatatgg catgtactca tgcctcaaac cctgtgtatg
    1051  ctacgttaaa gatacggatc tacttctacg attcggtatc taattaatat
    1101  aattttattt gaatattgtg cgtgaattca ctttccacag ttgtttgcaa
    1151  tacatcgtac aaaacatgat tgactgccct aattacattg ttaattgaaa
    1201  ttacacctaa tctatacaaa tatttcataa tctgcttcct aaatacgttt
    1251  aagaaaagac cagtcggagg gcgtgagatc gtccagaccc ggaagttcat
    1301  gaaacatttg tgaatcccca attccttcct gaggttgtag ttgaatctta
    1351  tctgcatctc tatcattgtt tgattcccgt gcgttagacg aaactccttg
    1401  atggttttga aatacagggg attgttgatt gtccagataa gtacgccatt
    1451  ctcgctctga tgcgcagtga tgagttcccc tgtgcgtgaa tccattgtct
    1501  ctgcacgtga aggctacgta taccgtgcaa ccacaaggga tgtcaatcct
    1551  gcgtctcctg attgctctct tcttcgcctc ccgatgctgg actttgattg
    1601  gtacctgagt acagcggatt tgagagagtg atgaaggtcg cattctttaa
    1651  tgcccaggat ttgagatgcg cgtttttctc ctcgtctaaa tactctttat
    1701  aggaggaatt gggacctgga ttgcagagga agattgttgg gatgcctcct
    1751  ttaatttgaa ctggcttccc gtatttcgtg ttgctttgcc agtccttttg
    1801  tgcacccatg aattccttaa agtgtttcag ataatgcggg tcaacatcat
    1851  ctatgacgtt ataccatgcg tcattactga acacctttgg gcttagatca
    1901  agatggccgc acaaataatt gtgaggccca agacttctgg cccatacggt
    1951  cttccctgtt ctgctttccc cttcaatcac tatactaatc ggtctatctg
    2001  gccgcgcagc ggcctcaacc acgttctccg ccgcccattc ttcaagttct
    2051  tctggaactt ggtcgaaaga agaagacaaa aaaggagaaa cataaggagc
    2101  tggaggctcc tgaaaaatcc tctctaaatt actatttaaa ttatgaaatt
    2151  gtaaaacaaa atctttggga gctaattccc gtataactct aagagcctct
    2201  gtcttacttc ctgcgttaag cgctgcggcg taagcgtcat tggctgtctg
    2251  ttgtccccct cttgcagatc ttccgtcgat ctggaattct ccccactcga
    2301  gtgtgtctcc atccttgtcg atgtaggact tgacgtcgga gctcgattta
    2351  gctccctgaa tgtttggatg gaaatgtgct gacctatttg gggataccag
    2401  gtcgaagagt ctatgatttt ggcatttgaa cttcccttcg aactggagaa
    2451  gcacatggag atgaggttgg ccatcctcgt gaagctctct gcagatcttg
    2501  atatactttt tgtttgaagc tgtgctgatt ttctgtagtt gttctagtgc
    2551  ttcttcttta gtgagagaac attttgggaa agtcaggaaa taattctttg
    2601  catttattag aaagcgttta gagggtggca ttgacttggt caatcgggtc
    2651  tcagatactt ctcccctgta tattgggtct caatatatag tgagacccaa
    2701  atggcattat ggtaataatc ccaacaaatt tgaaccccca tagcgcccac
    2751  cgttctaata tt