Sequence of DPV Pepper yellow vein Mali virus
Pepper yellow vein Mali virus, complete genome, isolate BF:Ban:Hpe1:09
ACC No: FN555172
Dated: 2009-12-06 | Length: 2787 | CRC: 1359347345
ID FN555172; SV 1; circular; genomic DNA; STD; VRL; 2787 BP.
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AC FN555172;
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DT 06-DEC-2009 (Rel. 103, Created)
DT 06-DEC-2009 (Rel. 103, Last updated, Version 1)
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DE Pepper yellow vein Mali virus, complete genome, isolate BF:Ban:Hpe1:09
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KW complete genome.
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OS Pepper yellow vein Mali virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2787
RA Tiendrebeogo F.;
RT ;
RL Submitted (06-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL Tiendrebeogo F., Biochimie-Microbiologie, CRSBAN/UFR/SVT Universite de
RL Ouagadougou, 03 BP 7131 Ouagadougou 03, Ouagadougou, BURKINA FASO.
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RN [2]
RA Tiendrebeogo F., Lefeuvre P., Hoareau M., Traore E.S., Barro N.,
RA Traore A.S., Konate G., Lett J.M., Traore O.;
RT "Complete genomic sequences of Pepper yellow vein Mali virus isolates
RT infecting Capsicum sp. in Burkina Faso";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2787
FT /organism="Pepper yellow vein Mali virus"
FT /host="Capsicum frutescens"
FT /strain="Mali"
FT /isolate="BF:Ban:Hpe1:09"
FT /mol_type="genomic DNA"
FT /country="Burkina Faso:Banfora"
FT /collected_by="Fidele Tiendrebeogo and Oumar Traore"
FT /collection_date="Apr-2009"
FT /db_xref="taxon:260378"
FT CDS 140. .490
FT /gene="V2"
FT /product="movement protein (MP)"
FT /protein_id="CBG76610.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKFLQAVEETYEPNTLGHDLIRDL
FT ISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIHQPCCCPHCPRHKQASIMDLPAHV
FT SKAQDVQNVQKP"
FT CDS 300. .1076
FT /gene="V1"
FT /product="coat protein (CP)"
FT /protein_id="CBG76611.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVPIAQGINRRRSW
FT TYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITH
FT RVGKRFCIKSMYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPQDFGQVFNMFDN
FT EPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYE
FT NHTENALLLYMVCTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1073. .1477)
FT /gene="C3"
FT /product="replication enhancer protein (REn)"
FT /protein_id="CBG76612.1"
FT /translation="MDSRTGEHITALQAKNGVFIWEINNPLYFTITNHEIRPFNMNQDI
FT LTLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFRFQVWKYLNNLGVISINN
FT VIRAVDHVLYVVLVNTISVMETHEIKFNLY"
FT CDS complement(1218. .1625)
FT /gene="C2"
FT /product="transcription activator protein (TrAP)"
FT /protein_id="CBG76613.1"
FT /translation="MQPSSPSTGHSTQVPIKVIHRRAKTKAIRRKRIDLDCGCSYYLHI
FT DCINHGFTHRGTHHCSSSKEWRFYMGDKQSPLFHDNKPRDQAIQHEPRHPHTPNTIQSQ
FT PQEGTGDSQMFSQLQGLDDLTASDWSFLKGI"
FT CDS complement(1549. .2613)
FT /gene="C1"
FT /product="replication associated protein (Rep)"
FT /protein_id="CBG76614.1"
FT /translation="MAPPKRFKISSKNYFLTFPKCSLTKEEALEQLLNLSTPTNTKFIK
FT VCRELHTNGEPHLHVLMQFEGKYQCTNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI
FT DKDGDTIEWGVFQVDGRSARGGCRNANDAAAEALNADSAEAAMAIIREKLPKEFIFQYH
FT NLKANLDRIFREPPAPYVSPFLSSSFTQVPEELEEWVSENVMGAAARPWRPNSIVVEGD
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDW
FT QSNTKYGKPIQIKGGIPSIFLCNPGPTSSYKEFLEEAKNYALKSWTLKNATFVTLDRPL
FT YSSTNQGHPPQSQD"
FT CDS complement(2199. .2456)
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="CBG76615.1"
FT /translation="MGNLISTCLCSSRGNTSARITDSSTWYPQPGQHISIRTFRELNQA
FT PTSSPTSTRTETPLNGGYSRSTAEVLGEAAEMLTTQQQRP"
XX
SQ Sequence 2787 BP; 714 A; 577 C; 657 G; 839 T; 0 other;
fn555172 Length: 2787 06-DEC-2009 Type: N Check: 1903 ..
1 accggatggc cgcgcccccg aaaaagatat gggccccacg cactaatatg
51 tgtcgaccaa tcatatctca gcctgaaagg ctagatatgt ggtttttgtc
101 ttttatatac ttgggcacca agtatgggcc ttgtccatca tgtgggatcc
151 acttttgaac gagtttcccg aatccgttca cggatttcgt tgtatgctcg
201 ccattaaatt tttgcaggcc gtggaggaaa cttacgagcc caatactttg
251 ggccacgatt taattaggga tcttattagt gttattaggg ctcgagacta
301 tgtcgaagcg acccggcgat ataatcattt ccacgcccgt ctcgaaggtt
351 cgtcgaaggc tgaacttcga cagcccatac accagccgtg ctgctgtccc
401 cattgcccaa ggcataaaca ggcgtcgatc atggacctac cggcccatgt
451 atcgaaagcc caggatgtac agaatgttca gaagccctga tgtccctcgt
501 ggttgtgagg gtccgtgtaa ggttcagtcg tacgaacaga gggatgatgt
551 taagcacact ggtattgttc gctgcgttag tgatgtcaca cgtggcccgg
601 gtattactca tcgtgtagga aagagatttt gtattaagtc tatgtatatt
651 ctgggtaaga tctggatgga tgaaaatatc aagaagcaga atcacaccaa
701 ccaggttatg ttttttttag ttcgtgatag aaggccctat ggaaccagcc
751 cacaggattt tgggcaggtg tttaacatgt tcgataatga gcccagtact
801 gctacggtga agaatgattt gcgtgatcgt tatcaagtcc tcaggaaatt
851 ccatgctact gtagttggtg gaccctctgg gatgaaagag caggctttag
901 taaagaggtt ttttagggtc aacacgcacg tcgtgtacaa tcatcaggaa
951 gcagctaaat atgagaatca tactgagaat gctttgttgt tgtatatggt
1001 atgtactcat gcctctaacc ctgtgtatgc tacgcttaag atacgcatct
1051 atttttatga tgccgttacg aattaataaa gattgaattt tatttcatga
1101 gtttccataa cggaaatcgt atttacaagt acaacatata acacatgatc
1151 aactgctcta attacattat tgatagaaat tacacctaaa ttattcaaat
1201 acttccaaac ttggaaccta aataccctta agaaaagacc agtctgaggc
1251 cgtaaggtcg tccagacctt gaagttgaga aaacatttgt gaatccccag
1301 tgccctcctg aggttgtgat tgaatcgtat ttggagtgtg aggatgtctt
1351 ggttcatgtt gaatggcctg atctcgtggt ttgttatcgt gaaatagagg
1401 ggattgttta tctcccatat aaaaacgcca ttctttgctt gaagagcagt
1451 gatgtgttcc cctgtgcgtg aatccatggt tgatgcagtc gatgtggagg
1501 tagtatgaac agccgcagtc gaggtctatt cgcttacggc gaatggcttt
1551 agtcttggct ctgcggtgga tgaccttgat tggtacttga gtagagtggc
1601 ctgtcgaggg tgacgaaggt tgcattcttt agtgtccagc tcttgagtgc
1651 gtaattcttc gcctcttcta ggaattcttt atatgaggat gttgggcctg
1701 gattgcagag gaagatagag ggaattccgc ctttaatttg aattggcttc
1751 ccgtactttg tgttgctttg ccagtccctc tgggccccaa agaattcttt
1801 ccagtgcttt agatagtgcg ggtcgacgtc atcaatgacg ttataccaag
1851 catcattaga ataaaccttt ggacttaagt ctaaatgacc acataagtaa
1901 ttatgtggcc ctaatgacct agcccaaaca gttttgccgg tacgactatc
1951 gccctctact acaatactat taggcctcca cggccgcgca gcggcaccca
2001 tgacattctc agacacccac tcttcaagtt cttctggaac ttgagtaaaa
2051 gaagacgaaa gaaaaggaga aacataagga gctgggggct cccgaaaaat
2101 cctatctaag ttagctttta aattatgata ttgaaaaata aattctttag
2151 ggagtttctc cctaataata gccatagcgg cttcagcgga atctgcattt
2201 aaggcctctg ctgctgcgtc gttagcattt ctgcagcctc ccctagcact
2251 tctgccgtcg acctggaata ccccccattc aatggtgtct ccgtccttgt
2301 cgatgtagga cttgacgtcg gagcttgatt tagctccctg aatgttcgga
2351 tggaaatgtg ttgacctggt tggggatacc aggtcgaaga atctgttatt
2401 cgtgcactgg tatttcccct cgaactgcat aagcacgtgg agatgaggtt
2451 ccccatttgt gtgcaactct ctgcagactt tgatgaattt tgtatttgtt
2501 ggggttgaca gatttagaag ttgctctaac gcttcctctt tagttaggga
2551 gcattttggg aaagtgagga aataattttt ggaacttatt ttaaaacgct
2601 ttggaggagc catttggtca atgtacccca attgaccgct cttggcattt
2651 ggtgcctaca attggggtaa tggggtacaa tatatactcg tacccctaat
2701 ggcattatgg taatttggta aagctctttt cactttaatt cgaaatttga
2751 attccgaatt ttttttagcg gccatccgta taatatt