Sequence of DPV Pepper yellow vein Mali virus
Pepper yellow vein Mali virus, complete genome, isolate BF:Ban:Hpe1:09
ACC No: FN555172
Dated: 2009-12-06 | Length: 2787 | CRC: 1359347345
ID FN555172; SV 1; circular; genomic DNA; STD; VRL; 2787 BP. XX AC FN555172; XX DT 06-DEC-2009 (Rel. 103, Created) DT 06-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Pepper yellow vein Mali virus, complete genome, isolate BF:Ban:Hpe1:09 XX KW complete genome. XX OS Pepper yellow vein Mali virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2787 RA Tiendrebeogo F.; RT ; RL Submitted (06-OCT-2009) to the EMBL/GenBank/DDBJ databases. RL Tiendrebeogo F., Biochimie-Microbiologie, CRSBAN/UFR/SVT Universite de RL Ouagadougou, 03 BP 7131 Ouagadougou 03, Ouagadougou, BURKINA FASO. XX RN [2] RA Tiendrebeogo F., Lefeuvre P., Hoareau M., Traore E.S., Barro N., RA Traore A.S., Konate G., Lett J.M., Traore O.; RT "Complete genomic sequences of Pepper yellow vein Mali virus isolates RT infecting Capsicum sp. in Burkina Faso"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1. .2787 FT /organism="Pepper yellow vein Mali virus" FT /host="Capsicum frutescens" FT /strain="Mali" FT /isolate="BF:Ban:Hpe1:09" FT /mol_type="genomic DNA" FT /country="Burkina Faso:Banfora" FT /collected_by="Fidele Tiendrebeogo and Oumar Traore" FT /collection_date="Apr-2009" FT /db_xref="taxon:260378" FT CDS 140. .490 FT /gene="V2" FT /product="movement protein (MP)" FT /protein_id="CBG76610.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKFLQAVEETYEPNTLGHDLIRDL FT ISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIHQPCCCPHCPRHKQASIMDLPAHV FT SKAQDVQNVQKP" FT CDS 300. .1076 FT /gene="V1" FT /product="coat protein (CP)" FT /protein_id="CBG76611.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVPIAQGINRRRSW FT TYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITH FT RVGKRFCIKSMYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPQDFGQVFNMFDN FT EPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYE FT NHTENALLLYMVCTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1073. .1477) FT /gene="C3" FT /product="replication enhancer protein (REn)" FT /protein_id="CBG76612.1" FT /translation="MDSRTGEHITALQAKNGVFIWEINNPLYFTITNHEIRPFNMNQDI FT LTLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFRFQVWKYLNNLGVISINN FT VIRAVDHVLYVVLVNTISVMETHEIKFNLY" FT CDS complement(1218. .1625) FT /gene="C2" FT /product="transcription activator protein (TrAP)" FT /protein_id="CBG76613.1" FT /translation="MQPSSPSTGHSTQVPIKVIHRRAKTKAIRRKRIDLDCGCSYYLHI FT DCINHGFTHRGTHHCSSSKEWRFYMGDKQSPLFHDNKPRDQAIQHEPRHPHTPNTIQSQ FT PQEGTGDSQMFSQLQGLDDLTASDWSFLKGI" FT CDS complement(1549. .2613) FT /gene="C1" FT /product="replication associated protein (Rep)" FT /protein_id="CBG76614.1" FT /translation="MAPPKRFKISSKNYFLTFPKCSLTKEEALEQLLNLSTPTNTKFIK FT VCRELHTNGEPHLHVLMQFEGKYQCTNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGVFQVDGRSARGGCRNANDAAAEALNADSAEAAMAIIREKLPKEFIFQYH FT NLKANLDRIFREPPAPYVSPFLSSSFTQVPEELEEWVSENVMGAAARPWRPNSIVVEGD FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDW FT QSNTKYGKPIQIKGGIPSIFLCNPGPTSSYKEFLEEAKNYALKSWTLKNATFVTLDRPL FT YSSTNQGHPPQSQD" FT CDS complement(2199. .2456) FT /gene="C4" FT /product="C4 protein" FT /protein_id="CBG76615.1" FT /translation="MGNLISTCLCSSRGNTSARITDSSTWYPQPGQHISIRTFRELNQA FT PTSSPTSTRTETPLNGGYSRSTAEVLGEAAEMLTTQQQRP" XX SQ Sequence 2787 BP; 714 A; 577 C; 657 G; 839 T; 0 other; fn555172 Length: 2787 06-DEC-2009 Type: N Check: 1903 .. 1 accggatggc cgcgcccccg aaaaagatat gggccccacg cactaatatg 51 tgtcgaccaa tcatatctca gcctgaaagg ctagatatgt ggtttttgtc 101 ttttatatac ttgggcacca agtatgggcc ttgtccatca tgtgggatcc 151 acttttgaac gagtttcccg aatccgttca cggatttcgt tgtatgctcg 201 ccattaaatt tttgcaggcc gtggaggaaa cttacgagcc caatactttg 251 ggccacgatt taattaggga tcttattagt gttattaggg ctcgagacta 301 tgtcgaagcg acccggcgat ataatcattt ccacgcccgt ctcgaaggtt 351 cgtcgaaggc tgaacttcga cagcccatac accagccgtg ctgctgtccc 401 cattgcccaa ggcataaaca ggcgtcgatc atggacctac cggcccatgt 451 atcgaaagcc caggatgtac agaatgttca gaagccctga tgtccctcgt 501 ggttgtgagg gtccgtgtaa ggttcagtcg tacgaacaga gggatgatgt 551 taagcacact ggtattgttc gctgcgttag tgatgtcaca cgtggcccgg 601 gtattactca tcgtgtagga aagagatttt gtattaagtc tatgtatatt 651 ctgggtaaga tctggatgga tgaaaatatc aagaagcaga atcacaccaa 701 ccaggttatg ttttttttag ttcgtgatag aaggccctat ggaaccagcc 751 cacaggattt tgggcaggtg tttaacatgt tcgataatga gcccagtact 801 gctacggtga agaatgattt gcgtgatcgt tatcaagtcc tcaggaaatt 851 ccatgctact gtagttggtg gaccctctgg gatgaaagag caggctttag 901 taaagaggtt ttttagggtc aacacgcacg tcgtgtacaa tcatcaggaa 951 gcagctaaat atgagaatca tactgagaat gctttgttgt tgtatatggt 1001 atgtactcat gcctctaacc ctgtgtatgc tacgcttaag atacgcatct 1051 atttttatga tgccgttacg aattaataaa gattgaattt tatttcatga 1101 gtttccataa cggaaatcgt atttacaagt acaacatata acacatgatc 1151 aactgctcta attacattat tgatagaaat tacacctaaa ttattcaaat 1201 acttccaaac ttggaaccta aataccctta agaaaagacc agtctgaggc 1251 cgtaaggtcg tccagacctt gaagttgaga aaacatttgt gaatccccag 1301 tgccctcctg aggttgtgat tgaatcgtat ttggagtgtg aggatgtctt 1351 ggttcatgtt gaatggcctg atctcgtggt ttgttatcgt gaaatagagg 1401 ggattgttta tctcccatat aaaaacgcca ttctttgctt gaagagcagt 1451 gatgtgttcc cctgtgcgtg aatccatggt tgatgcagtc gatgtggagg 1501 tagtatgaac agccgcagtc gaggtctatt cgcttacggc gaatggcttt 1551 agtcttggct ctgcggtgga tgaccttgat tggtacttga gtagagtggc 1601 ctgtcgaggg tgacgaaggt tgcattcttt agtgtccagc tcttgagtgc 1651 gtaattcttc gcctcttcta ggaattcttt atatgaggat gttgggcctg 1701 gattgcagag gaagatagag ggaattccgc ctttaatttg aattggcttc 1751 ccgtactttg tgttgctttg ccagtccctc tgggccccaa agaattcttt 1801 ccagtgcttt agatagtgcg ggtcgacgtc atcaatgacg ttataccaag 1851 catcattaga ataaaccttt ggacttaagt ctaaatgacc acataagtaa 1901 ttatgtggcc ctaatgacct agcccaaaca gttttgccgg tacgactatc 1951 gccctctact acaatactat taggcctcca cggccgcgca gcggcaccca 2001 tgacattctc agacacccac tcttcaagtt cttctggaac ttgagtaaaa 2051 gaagacgaaa gaaaaggaga aacataagga gctgggggct cccgaaaaat 2101 cctatctaag ttagctttta aattatgata ttgaaaaata aattctttag 2151 ggagtttctc cctaataata gccatagcgg cttcagcgga atctgcattt 2201 aaggcctctg ctgctgcgtc gttagcattt ctgcagcctc ccctagcact 2251 tctgccgtcg acctggaata ccccccattc aatggtgtct ccgtccttgt 2301 cgatgtagga cttgacgtcg gagcttgatt tagctccctg aatgttcgga 2351 tggaaatgtg ttgacctggt tggggatacc aggtcgaaga atctgttatt 2401 cgtgcactgg tatttcccct cgaactgcat aagcacgtgg agatgaggtt 2451 ccccatttgt gtgcaactct ctgcagactt tgatgaattt tgtatttgtt 2501 ggggttgaca gatttagaag ttgctctaac gcttcctctt tagttaggga 2551 gcattttggg aaagtgagga aataattttt ggaacttatt ttaaaacgct 2601 ttggaggagc catttggtca atgtacccca attgaccgct cttggcattt 2651 ggtgcctaca attggggtaa tggggtacaa tatatactcg tacccctaat 2701 ggcattatgg taatttggta aagctctttt cactttaatt cgaaatttga 2751 attccgaatt ttttttagcg gccatccgta taatatt