Sequence of DPV Beet black scorch virus
Beet black scorch virus complete genome, isolate Ir-Msh1, genomic RNA
ACC No: FN565520
Dated: 2010-01-20 | Length: 3644 | CRC: -890236005
ID FN565520; SV 1; linear; genomic RNA; STD; VRL; 3644 BP.
XX
AC FN565520;
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DT 20-JAN-2010 (Rel. 103, Created)
DT 20-JAN-2010 (Rel. 103, Last updated, Version 1)
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DE Beet black scorch virus complete genome, isolate Ir-Msh1, genomic RNA
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KW complete genome.
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OS Beet black scorch virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
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RN [1]
RP 1-3644
RA Mehrvar M.;
RT ;
RL Submitted (09-NOV-2009) to the EMBL/GenBank/DDBJ databases.
RL Mehrvar M., Phytopathology (FYMY), UCL university, SE/AGRO:BAPA/FYMY, Croix
RL du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM.
XX
RN [2]
RA Mehrvar M., Bragard C.;
RT "Beet black scorch virus satellite is linked with a single 3' untranslated
RT region and contain a partial Argonaute sequence";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3644
FT /organism="Beet black scorch virus"
FT /isolate="Ir-Msh1"
FT /mol_type="genomic RNA"
FT /country="Iran:Mashhad"
FT /collected_by="Mohsen Mehrvar"
FT /collection_date="Sep-2006"
FT /db_xref="taxon:196375"
FT CDS join(36. .644,648. .2210)
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase, p82"
FT /note="ORF2"
FT /note="produced by translational readthrough of ORF1"
FT /protein_id="CBH32825.1"
FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY
FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGKGGLLCTSGFTTPTWRGNPE
FT GLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPTP
FT KPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGVQ
FT DAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGGR
FT TVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGSD
FT RKTLAKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCATVHNYCSRL
FT GVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQTR
FT PVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSFF
FT MQFPLSAAPKTKSDMSIALQEDWKYKFNRTGCFRNLAPTPQSRYSFWRAFGVLPDEQIA
FT LENGFSRLSFDKLDQDTQEEVSLLQFSGA"
FT CDS 36. .647
FT /product="RNA polymerase, p23"
FT /note="ORF1"
FT /protein_id="CBH32826.1"
FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY
FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGK"
FT CDS 2228. .2419
FT /product="7K protein A, p7a"
FT /note="ORF3"
FT /protein_id="CBH32827.1"
FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS
FT VSMTVVGENVEFTQHFHF"
FT CDS 2421. .2618
FT /product="7K protein B, p7b"
FT /note="ORF4"
FT /protein_id="CBH32828.1"
FT /translation="MGTIYVVHEEPSGFLVWAFVVAIVCIIGLLSYTPPERLNHSYHEN
FT NQKTQYITIGGASTSKVSTN"
FT CDS 2434. .2577
FT /product="5K protein A, p5a"
FT /note="ORF5"
FT /protein_id="CBH32829.1"
FT /translation="MLFTKNPQGSSCGHSLLQLCVLLDSYRTPHLKDLTTLITKIIRRR
FT NT"
FT CDS 2647. .3345
FT /product="coat protein, p25"
FT /note="ORF6"
FT /protein_id="CBH32830.1"
FT /translation="MAPKRNKGGRKTRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT
FT RVSNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYIPIVPT
FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFYGATVQLLGDRPTTGAVCI
FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE
FT LIEPIPAAIN"
FT CDS 3410. .3547
FT /product="5K hypothetical protein B, p5"
FT /note="ORF7"
FT /protein_id="CBH32831.1"
FT /translation="MEDCLHDAGMFSHTVRYRCWILVNRLDRFGWFQTDVSLEIFMVLS
FT "
XX
SQ Sequence 3644 BP; 912 A; 851 C; 933 G; 948 T; 0 other;
fn565520 Length: 3644 20-JAN-2010 Type: N Check: 6422 ..
1 aagaaaccta accagtttct cgttgatcag cgatcatgga ttctatcccg
51 tatgtgatcc tgcgcatact tgattttatc tttcactcca tcttctttcc
101 atcccttctc tttatcatca aacacaatac caccatcctg tgggcttgtc
151 tatgtgccta tgggttctac cgcgctttcc gccttgtttt caagatcaag
201 gttgaggtgc acccagccac ccgtgctgtc tttaaggaca tggtcacccg
251 tttccagcgg gagagtatgt tctcacccga cgatgaagtg cctgagggca
301 tccctatcca cgaggacgta gaccttgtta gcgaccccac acacaaagat
351 attaagaggg tccgagctag caggcgagtc tcatacgctg tgagggttgc
401 tcatgtagcc aagtcaaagg tgggactact tgcgaacacc aaggcaaatg
451 agctggtgta ttctcggctt tgtcgagatg agatggttac ccacggtgtg
501 cgcccatcac acattgcaca tgcagtgccg cttgctgtcg cggcctgttt
551 tatcccattg gacagtgatt tcttggcagc atcaattaga aactgccagg
601 agatggaaga gcggagggcc gttttggggc cctcatatgg aaaataggga
651 ggcctactct gcaccagcgg gtttaccaca ccaacttggc gtggtaatcc
701 agagggtttg ctggtgaaga gaggaccacc tctggccaaa cccagaaaac
751 tgtaccgttt ttctggattt gggactcata tacggtacgg agtgcacgat
801 cactccttgg gcaatgttcg gaggggactt gtcgagcggc tatttatggt
851 agagaccaaa gatggccttg ctccgacacc aaagcccacc cctggcgtgt
901 atgccaagtt atcccggttc catgaccttg ttagtgccaa tctaacctcg
951 accaccagat taacatacga gcaatttctc gggttttatt ctggtcgcaa
1001 attggagagg taccaacagg ctgtggagtc gttagcaatc cgcccaatag
1051 gggtccagga tgcttggctt agcacgttcg ttaaggctga aaaactcaac
1101 atctcagcca aacccgaccc ggcacctagg gtcattcagc ctaggtcgcc
1151 gcggtataat gtggaggttg gacggttcct cagacatgct gaggaacatc
1201 tgttcgatgc cattaaccgt gtgtatggtg gacggacagt attcaagggg
1251 ttgaatgctg atcaggctgg catggagatg caagccatgt ggcaagaatt
1301 tgacaatcct gtcggtattg gcatggatgc ctctcggttt gatcaacacg
1351 tttctaagga ggcgttggag ttcgaacaca agatatggtt gtccatgtac
1401 catggctctg acaggaaaac attggcaaag ctgttgggga tgcaaatcca
1451 caatcgcggt cttgctagat gtcctgatgg ggaaatcagg tacacggttg
1501 aagggtgtcg tatgtctgga gatattaaca cctcttccgg caactgttat
1551 ataatgtgcg caactgtgca caattattgc agccggttgg gtgttaagag
1601 gttcaggctt gccaacaatg gtgatgattg catgctagtc gtggaagcta
1651 aggatgaagc gcgtgtaagg caagggctta ttgaatacta tagggagttg
1701 ggattcacaa tgaaagtgga acccactgtc tacgaacttg agcatcttga
1751 gttttgccaa acccgcccag tcctggttga tggggcttac agaatggtgc
1801 gcaatctaca ccagggcatg tcgaaggatc tacactcctt gcatgatctt
1851 ggaagtagga aagctgccga ggcatgggtc tcagcagttg gtagtggggg
1901 acgagtgatg aatgacgggg tgcctgtact caagtcgttc ttcatgcagt
1951 tccccctttc tgctgctcct aaaaccaagt ctgatatgag tatagcgttg
2001 caggaagatt ggaaatacaa attcaatcgg actgggtgtt tcagaaattt
2051 agcacccact ccacaatccc gctactcatt ttggcgtgct tttggagtgt
2101 tgccagatga acagattgcc ctggaaaatg gattttctcg tctaagtttt
2151 gacaaactag atcaggatac ccaggaggag gtcagccttc tccagttttc
2201 tggggcatga aaacctaacc acttttcatg gaacaacagc gtagtgaaca
2251 gcgtcgtgaa cgtagggtga gaagcagatc ggaggacagg aagtctatgt
2301 ctgatgtggg acagtctgca gttaataggg aagcagacgt taagaaagac
2351 atgggtccat cggtctctat gacggtggtg ggggagaacg tggagttcac
2401 acaacatttc cacttctgaa atgggcacaa tctatgttgt tcacgaagaa
2451 ccctcagggt tcctcgtgtg ggcattcgtt gttgcaattg tgtgtattat
2501 tggactccta tcgtacaccc cacctgaaag acttaaccac tcttatcacg
2551 aaaataatca gaagacgcaa tacataacta ttggaggagc atccactagt
2601 aaggtttcca cgaactgaat ttactgcttt ctagtataga taataaatgg
2651 cacctaaacg caacaaagga ggtaggaaga cccgcatgtc cgatgagacg
2701 gtgcgggctc ctgctgctgg tggtgtaata caacgcacac ccggcattcc
2751 cccacgtatt aggtccacca ctattggtac gcgagtatcc aacacagaat
2801 tacttgctgg tgtcaatgtt gcagcagcag gtgcattttc tgtcgttgga
2851 gccggtcttt tccccagcaa ccttggctgg ctcaacggga ttgcttccaa
2901 ttatagcaag tttagatggc tttctataaa gctcatctat attcccattg
2951 tccctacaac cactgctggc gctatgacca tggctttatc atacgacccg
3001 gctgatgcta cacctaccag cttccagcaa gtgcaacaga tgtataacag
3051 cataactgca cctgtatggg ctggatttta tggagctact gttcagctat
3101 taggggatcg cccaacaact ggtgccgtgt gtatcgatgt tgatgtcaat
3151 cgatttggat ttacatggta caggtacgca accttagccg ctatcacagc
3201 actcactgca aacgacagga atctgtacat tcctagcgtt tgtaatgtgg
3251 ctacttctgg cggatctgct gcgactaatg ttggcaactt aatgataaag
3301 tacagcattg agcttattga gcctataccc gctgccatca attagacccc
3351 acatcctggt gtggttaatc cagtgaaaaa tattaggaaa tccatggaat
3401 tcacacccca tggaggattg cttgcatgat gcaggtatgt ttagtcacac
3451 tgtgaggtat cgatgctgga tcctggtaaa caggcttgac aggtttgggt
3501 ggttccaaac cgatgtatca ctcgagatat tcatggtact aagctagaaa
3551 acatcatgcg tgcgcacacg gccggctacg tcctatcgta gccgggggct
3601 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc