Sequence of DPV Citrus tristeza virus

Citrus tristeza virus CP gene for coat protein, genomic RNA, isolate SYR-A2

ACC No: FN667582

Dated: 2010-03-02 | Length: 672 | CRC: -1480593392

                
ID   FN667582; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
XX
AC   FN667582;
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DT   02-MAR-2010 (Rel. 104, Created)
DT   02-MAR-2010 (Rel. 104, Last updated, Version 1)
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DE   Citrus tristeza virus CP gene for coat protein, genomic RNA, isolate SYR-A2
XX
KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RP   1-672
RA   Abou Kubaa R.;
RT   ;
RL   Submitted (05-FEB-2010) to the EMBL/GenBank/DDBJ databases.
RL   Abou Kubaa R., Integrated Pest Management, Mediterranean Agronomic Institue
RL   of Bari, Via Ceglie, 9, Valenzano, 70010, ITALY.
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RN   [2]
RA   Abou Kubaa R., Kumari S., Saponari M., Djeluah K., D'onghia A.M.;
RT   "Citrus tristeza virus in Syria, state of the art";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .672
FT                   /organism="Citrus tristeza virus"
FT                   /host="Citrus sinensis"
FT                   /isolate="SYR-A2"
FT                   /mol_type="genomic RNA"
FT                   /country="Syria:Lattakia-Hannadi nursery"
FT                   /collected_by="Raied Abou Kubaa"
FT                   /collection_date="30-May-2008"
FT                   /identified_by="Raied Abou Kubaa"
FT                   /PCR_primers="fwd_name: T36CP-F, fwd_seq:
FT                   atggacgacgaaacaaagaaattg, rev_name: T36CP-R, rev_seq:
FT                   tcaacgtgtgttgaatttccca"
FT                   /db_xref="taxon:12162"
FT   CDS             1. .672
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CBK19530.1"
FT                   /translation="MDDETKKLKNKNKETKEGDNVVAAESSFGSVNLHIDPTLIAMNDV
FT                   RRLGTQQNAALNRDLFLTLKEKYPNLSDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGIT
FT                   YTREGVEVDLSDKLWTDIVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 190 A; 123 C; 176 G; 183 T; 0 other;

fn667582 Length: 672  02-MAR-2010  Type: N  Check: 4439  ..

       1  atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga
      51  aggcgacaat gttgttgcag cggagtcttc tttcggttct gtaaacttac
     101  acatcgatcc gactctgata gcgatgaacg atgtgcgtcg gttgggtacc
     151  caacagaatg ccgctttgaa cagagatttg tttcttactt tgaaagagaa
     201  gtatcctaat ttgtctgata aagataagga ctttcactta gctatgatgt
     251  tgtatcgttt agcggttaag agttcatcat tgcaaagcga tgacgacact
     301  acgggtataa cgtacactcg ggagggcgtc gaagtggatt tgtctgacaa
     351  actttggact gacatcgtgt ttaattctaa gggtatcggt aaccgtacta
     401  acgcccttcg agtctggggt aggactaacg atgcccttta tttagccttt
     451  tgtagacaga atcgcaattt gagttatggc gggcgtccgc tagatgcagg
     501  gattccggcc gggtatcatt acctgtgtgc agatttcttg accggagctg
     551  gcttgactga tttagagtgt gctgtgtaca tacaagctaa agaacaattg
     601  ttgaagaagc gaggggctga tgaagtcgta gttaccaatg tcaggcagct
     651  tgggaaattc aacacacgtt ga