Sequence of DPV Mesta yellow vein mosaic virus
Hollyhock yellow vein mosaic virus, complete genome, isolate [Pakistan:17-5:06] Lahore10
ACC No: FR772081
Dated: 2012-01-10 | Length: 2750 | CRC: -225228919
ID FR772081; SV 1; circular; genomic DNA; STD; VRL; 2750 BP.
XX
AC FR772081;
XX
DT 10-JAN-2012 (Rel. 111, Created)
DT 10-JAN-2012 (Rel. 111, Last updated, Version 1)
XX
DE Hollyhock yellow vein mosaic virus, complete genome, isolate
DE [Pakistan:17-5:06] Lahore10
XX
KW complete genome.
XX
OS Hollyhock yellow vein mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2750
RA Zia ur Rehman M.;
RT ;
RL Submitted (29-DEC-2010) to the INSDC.
RL Zia ur Rehman M., University of the Punjab, School of Biological Sciences,
RL Lab 10, SBS, University of the Punjab, Lahore54590, PAKISTAN.
XX
RN [2]
RA Zia Ur Rehman M., Haider M.S.;
RT "Begomoviruses infecting Hollyhock in Pakistan";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2750
FT /organism="Hollyhock yellow vein mosaic virus"
FT /host="Alcea rosea"
FT /isolate="[Pakistan:17-5:06] Lahore10"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Lahore"
FT /isolation_source="host leaves"
FT /collected_by="Muhammad Zia Ur Rehman"
FT /collection_date="2006"
FT /clone="YA-7"
FT /db_xref="taxon:944994"
FT CDS 131. .478
FT /gene="av2"
FT /product="pre-coat protein"
FT /protein_id="CBY88985.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDL
FT ISILRSRNYVEASCRYRHFYPRVEGASSTELRQPLCNPCSCPHCPRHKVSHLGEQAHVS
FT EAQNVQDVQKP"
FT CDS 291. .1061
FT /gene="av1"
FT /product="coat protein"
FT /function="encapsidation"
FT /protein_id="CBY88986.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYATRAVAPTVRVTKSRIWA
FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR
FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVLFWIVRDRRPSGTPNDFQQVFNVYDNEP
FT STATVKNDQRNRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH
FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN"
FT CDS complement(1064. .1468)
FT /gene="ac3"
FT /product="replication enhancer protein"
FT /protein_id="CBY88987.1"
FT /translation="MDLRTEEPITAAQAWSGAYIWEVPNPLYFKILSHEVCPYSSKMDI
FT ITIRIQFNYNLRRALGVHKCFLTFRVWTTLHPPTGLFLRVFKTQVIKYLNNIGVISINS
FT IIRAVDHVLYSKIEQTMYVDQVSEIKFDIY"
FT CDS complement(1161. .1613)
FT /gene="ac2"
FT /product="transcriptional activator protein"
FT /protein_id="CBY88988.1"
FT /translation="MRSSSPLKDHCTQVPIKVQHREAKKRNRRRRVDLECGCSYYLSIN
FT CFNHGFTHRGTHHCSSSMEWRLYLGSTKSPLFQDPKPRGLSLLEQDGHNNNQDPIQLQP
FT SESSGSAQVFSDLPGLDDLTPSDWSFLKGIQDPSHKVSQQYRSNLN"
FT CDS complement(1510. .2601)
FT /gene="ac1"
FT /product="replication associated protein"
FT /protein_id="CBY88989.1"
FT /translation="MAPPKQFQINAKNYFITYPTCSLTKEEALSQLQNLQTPVNKKYIR
FT ICREFHENGEPHLHVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT AKDGDILDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH
FT NLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWACVNVVDAAARPLRPQSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWTDKNAIFVTLEGPL
FT YSGSNQSTAQGSEETQQEEESRS"
FT CDS complement(2142. .2450)
FT /gene="ac4"
FT /product="AC4 protein"
FT /protein_id="CBY88990.1"
FT /translation="MKMGNLIFTCSSSSKANTSAKITDSSTSYPQPGQHISIRTFRELN
FT PAPTSSPTSPRTGTFSTGENFRSMEDQQEEGNRQPTTLTPQHLTREVSRRLLESLRN"
XX
SQ Sequence 2750 BP; 704 A; 577 C; 622 G; 847 T; 0 other;
fr772081 Length: 2750 10-JAN-2012 Type: N Check: 4634 ..
1 accggatggc cgcgcgattt tttttgtggg cccctccact aactcttgtc
51 tgccaatcaa atgacgcgct caaagcttaa ataatttccc gcctattata
101 agtacttctt cgacaagttt cattttgaaa atgtgggatc cactgttaaa
151 cgagttccct gagactgttc acgggtttcg ttgcatgctt gcgattaaat
201 atcttcaaca actgtctgaa gaatactctc ctgatacggt aggttacgat
251 ctaattcgcg atttaatttc tattttacgt tccaggaatt atgtcgaagc
301 gtcctgccga tatcgtcatt tctacccccg cgtcgaaggt gcgtcgtcga
351 ctgaacttcg acagccccta tgcaacccgt gcagttgccc ccactgtccg
401 cgtcacaaag tctcgcattt gggcgaacag gcccatgtat cggaagccca
451 gaatgtacag gatgtacaga agccctgatg ttcctaaggg ttgtgaaggc
501 ccatgtaagg tgcagtcttt cgatgcgaaa aatgatattg ggcatatggg
551 taaggtaatt tgtctttctg atgttactag gggtattggg ctgacccatc
601 gagtagggaa acgtttttgc gttaagtcat tgtattttgt tggcaaaata
651 tggatggacg agaacatcaa gactaagaac catacaaaca ctgttttgtt
701 ctggatcgtg agagacaggc gtccttcagg aactcctaat gatttccagc
751 aagttttcaa tgtttatgat aacgagcctt ctacggctac tgtgaagaac
801 gaccagcgta atcgttttca ggtgttgagg aggttccagg caacagtcac
851 aggtggtcaa tatgctgcta aggaacaagc tataatcagg aaattctatc
901 gtgttaacaa ttatgttgtc tataatcacc aggaagctgg gaagtatgag
951 aatcacactg agaatgcttt gttgttgtac atggcatgta cccatgcctc
1001 taaccccgtg tatgctactt tgaaagttag aagttatttc tatgattctg
1051 taaccaatta atattaataa atatcgaatt ttatttctga aacttggtct
1101 acatacatag tttgttctat tttactgtac aatacatgat ctactgctct
1151 aataatcgaa ttaattgaga ttactcctat attgttgaga tactttatga
1201 cttgggtctt gaataccctt aagaaaagac cagtcggagg gtgtaaggtc
1251 gtccaaaccc ggaaggtcag aaaacacttg tgcactccca gagctctccg
1301 aaggttgtag ttgaattgga tcctgattgt tattatgtcc atcttgctcg
1351 agtaaggaca gacctcgtgg cttaggatct tgaaataaag gggatttggt
1401 acttcccaga tataggcgcc actccatgct tgagctgcag tgatgggttc
1451 ctctgtgcgt aaatccatgg ttgaaacagt ttatagacag ataataagaa
1501 cacccgcatt caagatctac tctcctcctc ctgttgcgtt tcttcgcttc
1551 cctgtgctgt actttgattg gaacctgagt acagtggtcc ttcaagggtg
1601 acgaagatcg cattcttgtc tgtccagttc tttagtgcag tgttcttttc
1651 ctcgtccagg aattctttat aactgctgtt aggaccagga ttgcagagga
1701 agattgttgg tattccgcct ttaatttgaa ctggcttccc gtactttgtg
1751 ttggattgcc agtccctttg ggcccccatg aactctttaa agtgtttgag
1801 gaagtgcgga tcaacgtcat caatgacgtt ataccaagcg tcattactgt
1851 acacctttgg gcttagatct aaatgcccac ataaatagtt atgtgggcct
1901 aaagacctag cccacattgt tttcccagta cgactgtcgc cctcaattac
1951 tatactttga ggtctcaggg gccgcgcagc ggcgtcgaca acatttacac
2001 acgcccactc ttcaagttct tctggaactt gatcgaaaga agaagacgaa
2051 aaaggagaaa cataaggagc tggtggctcc tgaaagatcc tgtctagatt
2101 tgcatttaaa ttatgaaatt gtagtacaaa atctttagga gctagttcct
2151 taatgactct aagagcctcc gacttacttc ccgcgttaag tgctgcggcg
2201 taagcgtcgt tggctgtctg ttgccctcct cttgctgatc ttccatcgat
2251 ctgaaattct ccccagtcga gaatgtcccc gtccttggcg atgtaggact
2301 tgacgtcgga gctggattta gctccctgaa tgttcggatg gaaatgtgct
2351 gacctggttg gggatacgag gtcgaagaat ctgttatttt tgcacttgta
2401 tttgccttcg aactggatga gcacgtgaag atgaggttcc ccattttcat
2451 gaaactctct gcagattcta atgtattttt tgtttactgg ggtttgtagg
2501 ttttgtaatt gggaaagtgc ctcctcttta gtaagagagc atgtgggata
2551 agtgatgaaa taatttttgg catttatctg gaattgtttg ggaggagcca
2601 ttgacttggt caatcggtac ccagcactag tcttatggca attggggaac
2651 ggtaccctat atatagttgg gtaccaaatg gcaataattg taattacgta
2701 atcaaattca aaatcctcgc gctccaaaaa gcggccatcc gtataatatt