Sequence of DPV Citrus tristeza virus
Citrus tristeza virus CP gene for coat protein, genomic RNA, isolate Q1294.A.g.5.cl3
ACC No: FR856894
Dated: 2011-05-31 | Length: 672 | CRC: -968078908
ID FR856894; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC FR856894; XX DT 31-MAY-2011 (Rel. 109, Created) DT 31-MAY-2011 (Rel. 109, Last updated, Version 1) XX DE Citrus tristeza virus CP gene for coat protein, genomic RNA, isolate DE Q1294.A.g.5.cl3 XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Yahiaoui D.; RT ; RL Submitted (03-MAY-2011) to the INSDC. RL Yahiaoui D., Integrated Pest Management, Istituto Agronomico Mediterraneo RL Di Bari, Via Ceglie, 9, 70010, ITALY. XX RN [2] RA Yahiaoui D., Djelouah K., D'Onghia A., Addante R.; RT "Monitoring of Citrus tristeza virus (CTV) air borne vectors and assessment RT of genetic variation of a local CTV RNA population through experimental RT aphid transmissions"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /isolate="Q1294.A.g.5.cl3" FT /mol_type="genomic RNA" FT /country="Italy:Apulia" FT /isolation_source="sub-isolate after transmission by Aphis FT gossypii" FT /identified_by="Yahiaoui Dorsaf" FT /clone="3" FT /PCR_primers="fwd_name: T36CP/FW, fwd_seq: FT atggacgacgaaacaaagaaattg, rev_name: T36CP/RV, rev_seq: FT tcaacgtgtgttgaatttccca" FT /db_xref="taxon:12162" FT CDS 1. .672 FT /gene="CP" FT /product="coat protein" FT /protein_id="CCB63188.1" FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLITMNDV FT HQLSTQQNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT FT YTREGVEVVLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLADLECAVYIQAKEQLLKKRGADEVVVTNVRQLEKFNT FT R" XX SQ Sequence 672 BP; 197 A; 122 C; 169 G; 184 T; 0 other; fr856894 Length: 672 31-MAY-2011 Type: N Check: 4394 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga 51 aggcgacgat gttgttgctg ctgagtcttc tttcggttcc gtaaacttac 101 acatcgatcc gactctgata acgatgaacg atgtgcatca gttgagtact 151 caacagaatg ctgctttgaa cagggactta tttcttgctc tgaaagggaa 201 gtatcctaac ttgcctgaca aagataagga ctttcacata gctatgatgt 251 tataccgttt agcggttaag agttcatcat tgcaaagtga tgatgacacc 301 acgggcataa cgtacactcg ggagggtgtt gaagtagttt tgtctgacaa 351 actttggacc gacatcgtgt ataattctaa gggtattggt aaccgaacta 401 acgcccttcg agtctggggt agaactaacg atgctcttta cttagccttt 451 tgtagacaga accgcaattt gagttatggc ggacgtccgc tagatgcagg 501 gattccggct gggtatcatt atttgtgtgc agatttcttg accggagctg 551 gcttggctga tttagaatgt gctgtgtaca tacaagctaa agaacaattg 601 ttgaaaaagc gaggggctga tgaggttgta gttactaatg tcaggcagct 651 tgagaaattc aacacacgtt ga