Sequence of DPV Citrus tristeza virus

Citrus tristeza virus CP gene for coat protein, genomic RNA, isolate Q1294.A.g.5.cl4

ACC No: FR856895

Dated: 2011-05-31 | Length: 672 | CRC: 405691336

                
ID   FR856895; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC   FR856895;
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DT   31-MAY-2011 (Rel. 109, Created)
DT   31-MAY-2011 (Rel. 109, Last updated, Version 1)
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DE   Citrus tristeza virus CP gene for coat protein, genomic RNA, isolate
DE   Q1294.A.g.5.cl4
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RP   1-672
RA   Yahiaoui D.;
RT   ;
RL   Submitted (03-MAY-2011) to the INSDC.
RL   Yahiaoui D., Integrated Pest Management, Istituto Agronomico Mediterraneo
RL   Di Bari, Via Ceglie, 9, 70010, ITALY.
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RN   [2]
RA   Yahiaoui D., Djelouah K., D'Onghia A., Addante R.;
RT   "Monitoring of Citrus tristeza virus (CTV) air borne vectors and assessment
RT   of genetic variation of a local CTV RNA population through experimental
RT   aphid transmissions";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .672
FT                   /organism="Citrus tristeza virus"
FT                   /isolate="Q1294.A.g.5.cl4"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy:Apulia"
FT                   /isolation_source="sub-isolate after transmission by Aphis
FT                   gossypii"
FT                   /identified_by="Yahiaoui Dorsaf"
FT                   /clone="4"
FT                   /PCR_primers="fwd_name: T36CP/FW, fwd_seq:
FT                   atggacgacgaaacaaagaaattg, rev_name: T36CP/RV, rev_seq:
FT                   tcaacgtgtgttgaatttccca"
FT                   /db_xref="taxon:12162"
FT   CDS             1. .672
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CCB63189.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVVAAESSLGSVNLHIDPTLITMNDV
FT                   RQLSTQQNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT
FT                   YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 197 A; 124 C; 170 G; 181 T; 0 other;

fr856895 Length: 672  31-MAY-2011  Type: N  Check: 2692  ..

       1  atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga
      51  aggcgacgat gttgttgctg ctgagtcttc tctcggttcc gtaaacttac
     101  acatcgatcc gactctgata acgatgaacg acgtgcgtca gttgagtact
     151  caacagaatg ctgctttgaa cagggactta tttcttgctc tgaaagggaa
     201  gtatcctaac ttgcctgaca aagataagga ctttcacata gctatgatgt
     251  tataccgttt agcggttaag agttcatcat tgcaaagtga tgatgacacc
     301  acgggcataa cgtacactcg ggagggtgtt gaagtagatt tgtctgacaa
     351  actttggacc gacatcgtgt ataattctaa gggtattggt aaccgaacta
     401  acgcccttcg agtctggggt agaactaacg atgctcttta cttagccttt
     451  tgtagacaga accgcaattt gagttatggc ggacgtccgc tagatgcagg
     501  gattccggct gggtatcatt atttgtgtgc agatttcttg accggagctg
     551  gcttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaattg
     601  ttgaaaaagc gaggggctga tgaggttgta gttactaatg tcaggcagct
     651  tgggaaattc aacacacgtt ga