Sequence of DPV Citrus tristeza virus
Citrus tristeza virus CP gene for coat protein, genomic RNA, isolate Q1294.A.s.cl2
ACC No: FR856897
Dated: 2011-05-31 | Length: 672 | CRC: -900263083
ID FR856897; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC FR856897; XX DT 31-MAY-2011 (Rel. 109, Created) DT 31-MAY-2011 (Rel. 109, Last updated, Version 1) XX DE Citrus tristeza virus CP gene for coat protein, genomic RNA, isolate DE Q1294.A.s.cl2 XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Yahiaoui D.; RT ; RL Submitted (03-MAY-2011) to the INSDC. RL Yahiaoui D., Integrated Pest Management, Istituto Agronomico Mediterraneo RL Di Bari, Via Ceglie, 9, 70010, ITALY. XX RN [2] RA Yahiaoui D., Djelouah K., D'Onghia A., Addante R.; RT "Monitoring of Citrus tristeza virus (CTV) air borne vectors and assessment RT of genetic variation of a local CTV RNA population through experimental RT aphid transmissions"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /isolate="Q1294.A.s.cl2" FT /mol_type="genomic RNA" FT /country="Italy:Apulia" FT /isolation_source="sub-isolate after transmission by Aphis FT spiraecola" FT /identified_by="Yahiaoui Dorsaf" FT /clone="2" FT /PCR_primers="fwd_name: T36CP/FW, fwd_seq: FT atggacgacgaaacaaagaaattg, rev_name: T36CP/RV, rev_seq: FT tcaacgtgtgttgaatttccca" FT /db_xref="taxon:12162" FT CDS 1. .672 FT /gene="CP" FT /product="coat protein" FT /protein_id="CCB63191.1" FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLITMNDV FT RQLSTQQNAALNRDLFLALKGKYPDLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT FT YTREGVEVDLSDKLWTDIAYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVTQLGKFNT FT R" XX SQ Sequence 672 BP; 196 A; 125 C; 170 G; 181 T; 0 other; fr856897 Length: 672 31-MAY-2011 Type: N Check: 2421 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga 51 aggcgacgat gttgttgctg ctgagtcttc tttcggttcc gtaaacttac 101 acatcgatcc gactctgata acgatgaacg atgtgcgtca gttgagtact 151 caacagaatg ctgctttgaa cagggactta tttcttgctc tgaaagggaa 201 gtatcctgac ttgcctgaca aagataagga ctttcacata gctatgatgt 251 tataccgttt agcggttaag agttcatcat tgcaaagtga tgatgacacc 301 acgggcataa cgtacactcg ggagggcgtt gaagtagatt tgtctgacaa 351 actttggacc gacatcgcgt ataattctaa gggtattggt aaccgaacta 401 acgcccttcg agtctggggt agaactaacg atgctcttta cttagccttt 451 tgtagacaga accgcaattt gagttatggc ggacgtccgc tagatgcagg 501 gattccggct gggtatcatt atttgtgtgc agatttcttg accggagctg 551 gcttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaattg 601 ttgaaaaagc gaggggctga tgaggttgta gttactaatg tcacgcagct 651 tgggaaattc aacacacgtt ga