Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate Bus, complete genome.
ACC No: GQ141873
Dated: 2011-05-05 | Length: 2774 | CRC: 2016435408
ID GQ141873; SV 1; circular; genomic DNA; STD; VRL; 2774 BP. XX AC GQ141873; XX DT 23-JUN-2009 (Rel. 101, Created) DT 05-MAY-2011 (Rel. 108, Last updated, Version 3) XX DE Tomato yellow leaf curl virus isolate Bus, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2774 RX PUBMED; 20963475. RA Kim S.H., Oh S., Oh T.K., Park J.S., Kim S.C., Kim S.H., Kim Y.S., RA Hong J.K., Sim S.Y., Park K.S., Lee H.G., Kim K.J., Choi C.W.; RT "Genetic diversity of tomato-infecting Tomato yellow leaf curl virus RT (TYLCV) isolates in Korea"; RL Virus Genes 42(1):117-127(2011). XX RN [2] RP 1-2774 RA Kim S.H., Oh T.K., Wang Y., Lee H.J., Kim J.A., Jang K.M., Kim K.T., RA Kim S.C., Udayakumar R., Choi C.W., Kim S.H., Kim Y.S.; RT ; RL Submitted (10-MAY-2009) to the EMBL/GenBank/DDBJ databases. RL Department of Biology & Medicinal Science, Pai Chai University, 439-6 Doma RL 2-dong, Seo-gu, Daejeon 302-735, South Korea XX FH Key Location/Qualifiers FH FT source 1. .2774 FT /organism="Tomato yellow leaf curl virus" FT /host="Lycopersicon esculentum" FT /isolate="Bus" FT /mol_type="genomic DNA" FT /country="South Korea:Busan" FT /collection_date="23-Jan-2009" FT /PCR_primers="fwd_seq: atgcctcgtttatttaatatatatgcc, FT rev_seq: ctcgagatgcctcgtttatttaatatatatg" FT /PCR_primers="fwd_seq: gaattcatgcaaccttcgtcaccc, rev_seq: FT gaattcctaaatactcttaagaaatgaccagt" FT /PCR_primers="fwd_seq: gaattcatggattcacgcaca, rev_seq: FT gaattctcagggcttcgatacattc" FT /PCR_primers="fwd_seq: gaattcatggggaaccacatctcc, rev_seq: FT gaattcttaataaaatttatattttatatcatga" FT /PCR_primers="fwd_seq: gaattcatgtcgaagcgwcca, rev_seq: FT gaattcttaatatattgagggcctcgg" FT /PCR_primers="fwd_seq: gaattcatgtgggacccacttctt, rev_seq: FT gaattcttaatttkrtaytgaatcatagaa" FT /PCR_primers="fwd_seq: gtcgacgttgaaatgaatcggtgt, rev_seq: FT ttacgccttattggtttcttcttg" FT /db_xref="taxon:10832" FT gene 307. .657 FT /gene="V2" FT CDS 307. .657 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:Q77PF9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q77PF9" FT /protein_id="ACS34716.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT gene 467. .1237 FT /gene="V1" FT CDS 467. .1237 FT /codon_start=1 FT /gene="V1" FT /product="V1" FT /note="coat protein" FT /db_xref="GOA:C6JW14" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C6JW14" FT /protein_id="ACS34717.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSI" FT gene complement(1240. .1644) FT /gene="C3" FT CDS complement(1240. .1644) FT /codon_start=1 FT /gene="C3" FT /product="C3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C6JW15" FT /protein_id="ACS34718.1" FT /translation="MDSRTGEVITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLHPQTGHFLRVFRYEVLKYLDSLGVISINN FT VIRSVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1385. .1792) FT /gene="C2" FT CDS complement(1385. .1792) FT /codon_start=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:C6JW16" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C6JW16" FT /protein_id="ACS34719.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGSHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGHGDSQMFSQLPNLDDITSSDWSFLKSI" FT gene complement(1701. .2774) FT /gene="C1" FT CDS complement(1701. .2774) FT /codon_start=1 FT /gene="C1" FT /product="C1" FT /note="replication-associated protein" FT /db_xref="GOA:C6JW17" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C6JW17" FT /protein_id="ACS34720.1" FT /translation="MPRLFNIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC FT KELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNQGPTSSYKEYLDEEKNISLKNWTLKNATFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT gene complement(2330. .2623) FT /gene="C4" FT CDS complement(2330. .2623) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q1ENB7" FT /protein_id="ACS34721.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY" XX SQ Sequence 2774 BP; 755 A; 533 C; 608 G; 878 T; 0 other; gq141873 Length: 2774 05-MAY-2011 Type: N Check: 4411 .. 1 gttgaaatga atcggtgtcc ctcaaagctc tatggcaatc ggtgtatcgg 51 tgtcttactt atacctggac acctaatggc tatttggtaa tttcatgaat 101 gttcattgta attcaaaatt caaaaatcaa atcattaaag cggccatccg 151 tataatatta ccggatggcc gcgccttttc cttttatgtg gtccccacga 201 gggttacaca gacgtcatcg tcaaccaatc aaattgcatc ctcaaacgtt 251 agataagtgt tcatttgtct ttatatactt ggtccccaag ttttttgtct 301 tgcaatatgt gggacccact tcttaatgag tttcctgaat ctgttcacgg 351 atttcgttgt atgttagcta ttaaatattt gcagtccgtt gaggaaactt 401 acgagcccaa tacattgggc cacgatttaa ttagggatct tatatctgtt 451 gtaagggccc gtgactatgt cgaagcgacc aggcgatata atcatttcca 501 cgcccgtctc gaaggttcgc cgaaggctga acttcgacag cccatacagc 551 agccgtgctg ctgtccccat tgtccaaggc acaaacaagc gacgatcatg 601 gacgtacagg cccatgtacc gaaagcccag aatatacaga atgtatcgaa 651 gccctgatgt tccccgtgga tgtgaaggcc catgtaaagt ccagtcttat 701 gagcaacggg atgatattaa gcatactggt attgttcgtt gtgttagtga 751 tgttactcgt ggatctggaa ttactcacag agtgggtaag aggttctgtg 801 ttaaatcgat atatttttta gggaaagtct ggatggatga aaatatcaag 851 aagcagaatc acactaatca ggtcatgttc ttcttagtcc gtgatagaag 901 gccctacgga agcagcccaa tggattttgg acaggttttt aatatgttcg 951 ataatgagcc cagtaccgca accgtgaaga atgatttgcg ggataggttt 1001 caagtgatga ggaaatttca tgctacagtt attggtggac cctctggaat 1051 gaaggaacag gcattagtta agagattttt taaaattaac agtcatgtaa 1101 cttataatca tcaggaggca gccaagtacg agaaccatac tgaaaacgcc 1151 ttgttactgt atatggcatg tacgcatgcc tcgaatccag tgtatgcaac 1201 tatgaaaata cgcatctatt tctatgattc aatataaaat taataaaatt 1251 tatattttat atcatgagtt tctgttacat ttattgtgtt ttcaagtaca 1301 tcatacaata catgatcaac tgatctgatt acattgttaa tggaaattac 1351 accaagacta tctaaatact taagaacttc atatctaaat actcttaaga 1401 aatgaccagt ctgaggatgt aatgtcgtcc aaattcggaa gttgagaaaa 1451 catttgtgaa tccccatgac cttcctgatg ttgtggttga atcttatctg 1501 aatggaaatg atgtcgtggt tcattagaaa tggcctctgg ctgtgttctg 1551 ttatcttgaa atagagggga ttgtttatct cccagataaa aacgccattc 1601 tctgcctgag gagcagtgat gacttcccct gtgcgtgaat ccatgattat 1651 tgcagttgag gtggaggtag tatgagcagc cacagtctag gtctacacgc 1701 ttacgcctta ttggtttctt cttggctatc ttgtgttgga ccttgattga 1751 tacttgcgaa cagtggctcg tagagggtga cgaaggttgc attcttgaga 1801 gtccaatttt tcaaggatat gtttttttct tcgtctagat attccttata 1851 tgaggaggta ggtccttgat tgcagaggaa gatagtggga attccccctt 1901 taatttgaat gggcttcccg tactttgtgt tgctttgcca gtccctttgg 1951 gcccccataa attccttgaa gtgctttaaa taatgcgggt ctacgtcatc 2001 aatgacgttg taccacgcat cattgctgta cacctttggg cttaggtcta 2051 gatgtccaca taaataatta tgtgggccta gagacctggc ccacattgtt 2101 ttccctgttc tgctatcacc ctcaatgaca atacttatgg gtctccatgg 2151 ccgcgcagcg gaagacacga cgttctcggc gacccactct tcaagttcat 2201 ctggaacttg attaaaagaa gaagaaagaa atggagaaac ataaacttct 2251 aaaggaggac taaaaatcct atctaaattt gaacttaaat tatgaaattg 2301 taaaatatag tcctttgggg ccttctcttt taatatattg agggcctcgg 2351 atttactgcc tgaattgagt gcttcggcat atgcgtcgtt ggcagattgc 2401 tgacctcctc tagctgatct gccatcgatt tggaaaactc caaaatcaat 2451 gaagtctccg tctttctcca cgtaggtctt gacatctgtt gagctcttag 2501 ctgcctgaat gttcggatgg aaatgtgctg acctgtttgg ggataccagg 2551 tcgaagaacc gttggttctt acattggtat ttgccttcga attggataag 2601 cacatggaga tgtggttccc cattctcgtg gagttctttg caaactttga 2651 tgtatttttt atttgttggg gtttctaggt tttttaattg ggaaagtgct 2701 tcctctttag agagagaaca attgggatat gttaggaaat aatttttggc 2751 atatatatta aataaacgag gcat