Sequence of DPV Faba bean necrotic stunt virus

Faba bean necrotic stunt virus isolate JKI-2000 segment DNA-U4, complete sequence.

ACC No: GQ150785

Dated: 2009-09-27 | Length: 987 | CRC: -1937143092

                
ID   GQ150785; SV 1; circular; genomic DNA; STD; VRL; 987 BP.
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AC   GQ150785;
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DT   10-AUG-2009 (Rel. 101, Created)
DT   27-SEP-2009 (Rel. 102, Last updated, Version 2)
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DE   Faba bean necrotic stunt virus isolate JKI-2000 segment DNA-U4, complete
DE   sequence.
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KW   .
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OS   Faba bean necrotic stunt virus
OC   Viruses; ssDNA viruses; Nanoviridae; Nanovirus.
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RN   [1]
RP   1-987
RX   PUBMED; 19656882.
RA   Grigoras I., Timchenko T., Katul L., Grande-Perez A., Vetten H.J.,
RA   Gronenborn B.;
RT   "Reconstitution of authentic nanovirus from multiple cloned DNAs";
RL   J. Virol. 83(20):10778-10787(2009).
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RN   [2]
RP   1-987
RA   Grigoras I., Gronenborn B.;
RT   ;
RL   Submitted (13-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL   Institut des Sciences du Vegetal, Centre National de la Recherche
RL   Scientifique, Gif sur Yvette 91198, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .987
FT                   /organism="Faba bean necrotic stunt virus"
FT                   /segment="DNA-U4"
FT                   /host="Vicia faba"
FT                   /strain="Ethiopia:Holetta"
FT                   /isolate="JKI-2000"
FT                   /mol_type="genomic DNA"
FT                   /country="Ethiopia:Holetta"
FT                   /isolation_source="plant tissue"
FT                   /collected_by="K.M. Makkouk"
FT                   /collection_date="Oct-1997"
FT                   /identified_by="L. Katul and H.-J. Vetten"
FT                   /note="acronym: FBNSV-[ET:Hol] DNA-U4"
FT                   /db_xref="taxon:283824"
FT   stem_loop       join(968. .987,1. .13)
FT                   /note="part of replication origin"
FT   misc_feature    join(981. .987,1. .2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   misc_feature    1
FT                   /note="first base of viral (+) strand"
FT   TATA_signal     285. .291
FT   CDS             364. .684
FT                   /codon_start=1
FT                   /product="U4 protein"
FT                   /protein_id="ACU00028.1"
FT                   /translation="MECRFFISIILFVVLLNPSLIINMVLGYVLGSLFRSNYSRLKKLL
FT                   SGNKNENREEEDEHISQMKNPFEDAESDVLQHLKTLGLETKVEGDDLEYLQRLWESMSS
FT                   KK"
FT   polyA_signal    680. .685
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SQ   Sequence 987 BP; 282 A; 174 C; 203 G; 328 T; 0 other;

gq150785 Length: 987  27-SEP-2009  Type: N  Check: 8332  ..

       1  acccccgccc caggttcagc ggagtcattg agactccatc tcagccgttc
      51  attaaatgga cacgtgtaca atcaggatct gtgattcgtg aagcgaatct
     101  gacggaagat tgtacacttt atctcttcac gcgttttgaa gctactgttg
     151  attatgcaag tggacgatgg tccccacata tatatttaaa acgacaacag
     201  ctgtatacag ctgtattgat gtgacgtata taattaaata attatttaat
     251  tatgaggatt gtcctgcacg cttatgttgt cgtctataaa accttctcta
     301  ctgaagaacc tgtctctgaa tttactttct ctctcttctg tgtagaagag
     351  agataagcag gttatggaat gtaggttctt catctctatt attttattcg
     401  tcgtgctgct gaatccttct ctgataatta atatggttct cgggtatgtt
     451  cttggctctt tattcagaag taattattcc agattaaaga agttactgtc
     501  aggtaataag aacgagaacc gcgaagaaga agacgaacat atatcccaga
     551  tgaagaatcc gttcgaggat gctgaatcag atgtattgca acatctaaag
     601  actctgggtc tggaaacaaa ggttgaaggc gatgatcttg aatatttaca
     651  gcgattgtgg gaatctatga gtagtaagaa ataaatatgt ttacccaagt
     701  aattgtaaat aggtaataac agctcacgtc atgcttcatt cctattggtc
     751  agtctattgg gccttgagag caattgggcc tattaagccc attaagtcag
     801  tcagatatat tgtatttgta atattgttaa ttagtcaata aatattaatc
     851  atttttcatt tactccgcgt agcggtatgt taaatatttt attgccatat
     901  atacccttca ttaatgaagg ggtaatgtct attttgccct tgtgacgtca
     951  tttgatcccg tgctgagctg gggcggggct tagtatt