Sequence of DPV Faba bean necrotic stunt virus
Faba bean necrotic stunt virus isolate JKI-2000 segment DNA-U4, complete sequence.
ACC No: GQ150785
Dated: 2009-09-27 | Length: 987 | CRC: -1937143092
ID GQ150785; SV 1; circular; genomic DNA; STD; VRL; 987 BP. XX AC GQ150785; XX DT 10-AUG-2009 (Rel. 101, Created) DT 27-SEP-2009 (Rel. 102, Last updated, Version 2) XX DE Faba bean necrotic stunt virus isolate JKI-2000 segment DNA-U4, complete DE sequence. XX KW . XX OS Faba bean necrotic stunt virus OC Viruses; ssDNA viruses; Nanoviridae; Nanovirus. XX RN [1] RP 1-987 RX PUBMED; 19656882. RA Grigoras I., Timchenko T., Katul L., Grande-Perez A., Vetten H.J., RA Gronenborn B.; RT "Reconstitution of authentic nanovirus from multiple cloned DNAs"; RL J. Virol. 83(20):10778-10787(2009). XX RN [2] RP 1-987 RA Grigoras I., Gronenborn B.; RT ; RL Submitted (13-MAY-2009) to the EMBL/GenBank/DDBJ databases. RL Institut des Sciences du Vegetal, Centre National de la Recherche RL Scientifique, Gif sur Yvette 91198, France XX FH Key Location/Qualifiers FH FT source 1. .987 FT /organism="Faba bean necrotic stunt virus" FT /segment="DNA-U4" FT /host="Vicia faba" FT /strain="Ethiopia:Holetta" FT /isolate="JKI-2000" FT /mol_type="genomic DNA" FT /country="Ethiopia:Holetta" FT /isolation_source="plant tissue" FT /collected_by="K.M. Makkouk" FT /collection_date="Oct-1997" FT /identified_by="L. Katul and H.-J. Vetten" FT /note="acronym: FBNSV-[ET:Hol] DNA-U4" FT /db_xref="taxon:283824" FT stem_loop join(968. .987,1. .13) FT /note="part of replication origin" FT misc_feature join(981. .987,1. .2) FT /note="conserved nonanucleotide at replication origin" FT misc_feature 1 FT /note="first base of viral (+) strand" FT TATA_signal 285. .291 FT CDS 364. .684 FT /codon_start=1 FT /product="U4 protein" FT /protein_id="ACU00028.1" FT /translation="MECRFFISIILFVVLLNPSLIINMVLGYVLGSLFRSNYSRLKKLL FT SGNKNENREEEDEHISQMKNPFEDAESDVLQHLKTLGLETKVEGDDLEYLQRLWESMSS FT KK" FT polyA_signal 680. .685 XX SQ Sequence 987 BP; 282 A; 174 C; 203 G; 328 T; 0 other; gq150785 Length: 987 27-SEP-2009 Type: N Check: 8332 .. 1 acccccgccc caggttcagc ggagtcattg agactccatc tcagccgttc 51 attaaatgga cacgtgtaca atcaggatct gtgattcgtg aagcgaatct 101 gacggaagat tgtacacttt atctcttcac gcgttttgaa gctactgttg 151 attatgcaag tggacgatgg tccccacata tatatttaaa acgacaacag 201 ctgtatacag ctgtattgat gtgacgtata taattaaata attatttaat 251 tatgaggatt gtcctgcacg cttatgttgt cgtctataaa accttctcta 301 ctgaagaacc tgtctctgaa tttactttct ctctcttctg tgtagaagag 351 agataagcag gttatggaat gtaggttctt catctctatt attttattcg 401 tcgtgctgct gaatccttct ctgataatta atatggttct cgggtatgtt 451 cttggctctt tattcagaag taattattcc agattaaaga agttactgtc 501 aggtaataag aacgagaacc gcgaagaaga agacgaacat atatcccaga 551 tgaagaatcc gttcgaggat gctgaatcag atgtattgca acatctaaag 601 actctgggtc tggaaacaaa ggttgaaggc gatgatcttg aatatttaca 651 gcgattgtgg gaatctatga gtagtaagaa ataaatatgt ttacccaagt 701 aattgtaaat aggtaataac agctcacgtc atgcttcatt cctattggtc 751 agtctattgg gccttgagag caattgggcc tattaagccc attaagtcag 801 tcagatatat tgtatttgta atattgttaa ttagtcaata aatattaatc 851 atttttcatt tactccgcgt agcggtatgt taaatatttt attgccatat 901 atacccttca ttaatgaagg ggtaatgtct attttgccct tgtgacgtca 951 tttgatcccg tgctgagctg gggcggggct tagtatt