Sequence of DPV Tomato bushy stunt virus
Tomato bushy stunt virus isolate EghTBSV RNA-dependent RNA polymerase gene, partial cds; and 33 kDa protein gene, complete cds.
ACC No: GQ206144
Dated: 2009-07-28 | Length: 2460 | CRC: 776832695
ID GQ206144; SV 1; linear; genomic RNA; STD; VRL; 2460 BP. XX AC GQ206144; XX DT 28-JUL-2009 (Rel. 101, Created) DT 28-JUL-2009 (Rel. 101, Last updated, Version 1) XX DE Tomato bushy stunt virus isolate EghTBSV RNA-dependent RNA polymerase gene, DE partial cds; and 33 kDa protein gene, complete cds. XX KW . XX OS Tomato bushy stunt virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Tombusvirus. XX RN [1] RP 1-2460 RA Fattouh F.A., Hafez E.E., Saber G.A., Salah A.; RT "Molecular Characterization of Egyptian Isolate Tomato Bushy Stunt Virus RT (TBSV) and the Disclosure of Defense Genes Against the Virus"; RL Unpublished. XX RN [2] RP 1-2460 RA Fattouh F.A., Hafez E.E., Saber G.A., Salah A.; RT ; RL Submitted (04-APR-2009) to the EMBL/GenBank/DDBJ databases. RL Plant Molecular Pathology, Arid Land Institute (ARADI), Mubarak City for RL Scientific Research and Technology Application, Alexandria 21934, Egypt XX FH Key Location/Qualifiers FH FT source 1. .2460 FT /organism="Tomato bushy stunt virus" FT /host="Lycopersicon esculentum" FT /isolate="EghTBSV" FT /mol_type="genomic RNA" FT /country="Egypt" FT /db_xref="taxon:12145" FT CDS 167. .>2460 FT /codon_start=1 FT /transl_except=(pos:1055. .1057,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="92 kDa protein; readthrough stop codon" FT /protein_id="ACT67403.1" FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIDCDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVIPLSIAAIPIIPLLSYATWV FT RAVSVRAFGNELSFNVRVPRPSVPKKGLLLRLAAGLAFRPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLITGSRLTKVIASTGTPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRAGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARAPQPTKGAFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYDGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYSADEVGAIFREK FT WDRFDKPVAIGLDAWRFDQHCSVEALQYEHSFYRAMYPGNKLLGKLLEWQLHNKGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER FT RNLKQVQRTLPEYFLNLGYTMKVERPVFQLEEVEFDQAHPVQFQGGWKMVGNVRTAMRK FT DVHCVNNIRDLATRRAWSNAQHHGGLALRAGIPVVETFYSRFKLYDTPRKHQRIDTVTN FT VHKWRGSGGSYV" FT CDS 167. .1057 FT /codon_start=1 FT /product="33 kDa protein" FT /protein_id="ACT67404.1" FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIDCDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVIPLSIAAIPIIPLLSYATWV FT RAVSVRAFGNELSFNVRVPRPSVPKKGLLLRLAAGLAFRPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLITGSRLTKVIASTGTPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVK" XX SQ Sequence 2460 BP; 639 A; 478 C; 693 G; 650 T; 0 other; gq206144 Length: 2460 28-JUL-2009 Type: N Check: 5985 .. 1 agaaattccc caggatttct cgacctagta cgtctacctg gtgacttgcg 51 ctgtctgttg ctttgcgtag ggaatttctc tccaatatta ttatctttaa 101 tttggggttt gaaggttggg tctacccttc ggggggataa attgtaactt 151 ccaacaaata agcgacatgg agaccattaa gaggatgatc tggcctaaga 201 aagagatttt tgtgggtgat ttcgcgatcg gagttaatag gacggcaccg 251 gtggacattt tccaattggt gtgtcgtgtg gttctaagat acatgaggac 301 agggaaaata gactgtgatt ctgacagcat gactaagttt atagttgaat 351 tacttaaaac tgattgtgct gccaaatggg agtggtttat gaagagacgg 401 cagaggggcg actatgttat ccctctatct atagccgcca tcccaatcat 451 accgctgttg agttatgcca catgggtacg cgcagtctca gtcagggcct 501 ttgggaatga actttcgttc aatgtcagag tacctagacc atctgtacct 551 aagaaaggat tgctcctcag actggcggca ggcctagcgt tcagacctat 601 atgcgcgctg gcagtgtacg ctaccctacc tagggaaaaa ctgtcggtat 651 ttaagctgag aaccgaggca cgcgcacata tggaggatga gagagaagcg 701 acagattgct tggtggttga gccggcacgg gaactcaagg gtaaggatgg 751 tgaggatctc atcactggta gtagattaac taaggtgatt gcgtccacag 801 ggacgcctcg caggaggccg tatgcagcca agatcgcaca ggttgcgaga 851 gctaaggtgg gttaccttaa gaatagtcct gagaatagac taatctacca 901 gcgagtgatg attgagatca tggacaaaga ctgcgtcagg tatgttgaca 951 gggatgtcat attgccattg gctattggat gctgttttgt ctatccggat 1001 ggagtggagg agtcggcggc actatggggt tcccaggaat cccttggtgt 1051 caaataggga ggcctagtac gtctacctgg tgttgtaaca cagatcaatc 1101 gagatatccc atctgatgtg ttacttcccc aggaggtgct agaggttcgt 1151 gcaggacctc ccaatgctaa ggaccgtaat atatttatgg ttgcaggttg 1201 cccatcacag gcacggttct tagtacataa tcactgcctg aaaaacctta 1251 aaaggggtct tgtggagaga gtcttctgcg tagagagaaa cgggaagctc 1301 gctcgcgctc cacaacctac caaaggagct tttggacgtc tttccccgtt 1351 caggaaagcg gtttgtgaga aggttggggt agcccaccga cttgggtatg 1401 atgggtttct gtcatactac gacggtgcga aactccgtac ttacacacga 1451 gccgtggaga gtctgcatat cacacctgtt tccgagaggg atagtcattt 1501 gactaccttc gtgaaagcag agaagatatc gacgtctaaa ggtgacccag 1551 cacctcgggt gattcagcct cgaaacccga ggtacaatgt ggaacttgga 1601 agatatctac ggcatatgga atccaagctg atgaaagctg ttgatggcgt 1651 gttcggagaa acaacatgca tcaaaggata ctctgccgac gaggtgggtg 1701 caatttttcg ggagaaatgg gataggtttg ataaacctgt agccataggt 1751 ctcgatgcat ggaggtttga tcaacactgt tccgtggagg ctttgcaata 1801 tgagcatagt ttctacaggg ccatgtaccc tggcaacaag cttttgggca 1851 agttgttgga atggcaactc cataataaag gtaaaggtta tgtccctgat 1901 gggactataa cttatcgtaa ggagggttgt cgtatgagtg gggatataaa 1951 cacttcgttg gggaactatc tgttgatgtg tgcaatggta catgggtaca 2001 tgcgtcattt ggggattaat gaatttagtc tggcgaactg tggggatgat 2051 tgcgttctca ttcttgagcg caggaatctt aaacaggtgc agagaactct 2101 gcctgagtat ttccttaatt tgggttatac catgaaggtt gagcgacctg 2151 tatttcaatt ggaagaggtt gaatttgacc aggcacaccc agtacagttt 2201 caagggggtt ggaagatggt gggaaatgtc cgtactgcta tgagaaaaga 2251 cgtgcactgt gtcaataata tacgcgattt ggcgacgagg agagcttgga 2301 gtaatgctca acatcatgga gggctagcac ttagggctgg tatacctgtg 2351 gttgagactt tttactccag gttcaagctg tatgatacac ctcgtaagca 2401 tcaacgcatt gacacagtca ctaatgttca taagtggcgt ggatcgggtg 2451 ggagctatgt