Sequence of DPV Tomato bushy stunt virus
Tomato bushy stunt virus isolate EghTBSV RNA-dependent RNA polymerase gene, partial cds; and 33 kDa protein gene, complete cds.
ACC No: GQ206144
Dated: 2009-07-28 | Length: 2460 | CRC: 776832695
ID GQ206144; SV 1; linear; genomic RNA; STD; VRL; 2460 BP.
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AC GQ206144;
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DT 28-JUL-2009 (Rel. 101, Created)
DT 28-JUL-2009 (Rel. 101, Last updated, Version 1)
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DE Tomato bushy stunt virus isolate EghTBSV RNA-dependent RNA polymerase gene,
DE partial cds; and 33 kDa protein gene, complete cds.
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KW .
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OS Tomato bushy stunt virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Tombusvirus.
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RN [1]
RP 1-2460
RA Fattouh F.A., Hafez E.E., Saber G.A., Salah A.;
RT "Molecular Characterization of Egyptian Isolate Tomato Bushy Stunt Virus
RT (TBSV) and the Disclosure of Defense Genes Against the Virus";
RL Unpublished.
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RN [2]
RP 1-2460
RA Fattouh F.A., Hafez E.E., Saber G.A., Salah A.;
RT ;
RL Submitted (04-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Molecular Pathology, Arid Land Institute (ARADI), Mubarak City for
RL Scientific Research and Technology Application, Alexandria 21934, Egypt
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FH Key Location/Qualifiers
FH
FT source 1. .2460
FT /organism="Tomato bushy stunt virus"
FT /host="Lycopersicon esculentum"
FT /isolate="EghTBSV"
FT /mol_type="genomic RNA"
FT /country="Egypt"
FT /db_xref="taxon:12145"
FT CDS 167. .>2460
FT /codon_start=1
FT /transl_except=(pos:1055. .1057,aa:OTHER)
FT /product="RNA-dependent RNA polymerase"
FT /note="92 kDa protein; readthrough stop codon"
FT /protein_id="ACT67403.1"
FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIDCDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVIPLSIAAIPIIPLLSYATWV
FT RAVSVRAFGNELSFNVRVPRPSVPKKGLLLRLAAGLAFRPICALAVYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLITGSRLTKVIASTGTPRRRPYAAK
FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRAGPPNAKDRNIF
FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARAPQPTKGAFGRLSPFRKAV
FT CEKVGVAHRLGYDGFLSYYDGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK
FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYSADEVGAIFREK
FT WDRFDKPVAIGLDAWRFDQHCSVEALQYEHSFYRAMYPGNKLLGKLLEWQLHNKGKGYV
FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER
FT RNLKQVQRTLPEYFLNLGYTMKVERPVFQLEEVEFDQAHPVQFQGGWKMVGNVRTAMRK
FT DVHCVNNIRDLATRRAWSNAQHHGGLALRAGIPVVETFYSRFKLYDTPRKHQRIDTVTN
FT VHKWRGSGGSYV"
FT CDS 167. .1057
FT /codon_start=1
FT /product="33 kDa protein"
FT /protein_id="ACT67404.1"
FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIDCDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVIPLSIAAIPIIPLLSYATWV
FT RAVSVRAFGNELSFNVRVPRPSVPKKGLLLRLAAGLAFRPICALAVYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLITGSRLTKVIASTGTPRRRPYAAK
FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVK"
XX
SQ Sequence 2460 BP; 639 A; 478 C; 693 G; 650 T; 0 other;
gq206144 Length: 2460 28-JUL-2009 Type: N Check: 5985 ..
1 agaaattccc caggatttct cgacctagta cgtctacctg gtgacttgcg
51 ctgtctgttg ctttgcgtag ggaatttctc tccaatatta ttatctttaa
101 tttggggttt gaaggttggg tctacccttc ggggggataa attgtaactt
151 ccaacaaata agcgacatgg agaccattaa gaggatgatc tggcctaaga
201 aagagatttt tgtgggtgat ttcgcgatcg gagttaatag gacggcaccg
251 gtggacattt tccaattggt gtgtcgtgtg gttctaagat acatgaggac
301 agggaaaata gactgtgatt ctgacagcat gactaagttt atagttgaat
351 tacttaaaac tgattgtgct gccaaatggg agtggtttat gaagagacgg
401 cagaggggcg actatgttat ccctctatct atagccgcca tcccaatcat
451 accgctgttg agttatgcca catgggtacg cgcagtctca gtcagggcct
501 ttgggaatga actttcgttc aatgtcagag tacctagacc atctgtacct
551 aagaaaggat tgctcctcag actggcggca ggcctagcgt tcagacctat
601 atgcgcgctg gcagtgtacg ctaccctacc tagggaaaaa ctgtcggtat
651 ttaagctgag aaccgaggca cgcgcacata tggaggatga gagagaagcg
701 acagattgct tggtggttga gccggcacgg gaactcaagg gtaaggatgg
751 tgaggatctc atcactggta gtagattaac taaggtgatt gcgtccacag
801 ggacgcctcg caggaggccg tatgcagcca agatcgcaca ggttgcgaga
851 gctaaggtgg gttaccttaa gaatagtcct gagaatagac taatctacca
901 gcgagtgatg attgagatca tggacaaaga ctgcgtcagg tatgttgaca
951 gggatgtcat attgccattg gctattggat gctgttttgt ctatccggat
1001 ggagtggagg agtcggcggc actatggggt tcccaggaat cccttggtgt
1051 caaataggga ggcctagtac gtctacctgg tgttgtaaca cagatcaatc
1101 gagatatccc atctgatgtg ttacttcccc aggaggtgct agaggttcgt
1151 gcaggacctc ccaatgctaa ggaccgtaat atatttatgg ttgcaggttg
1201 cccatcacag gcacggttct tagtacataa tcactgcctg aaaaacctta
1251 aaaggggtct tgtggagaga gtcttctgcg tagagagaaa cgggaagctc
1301 gctcgcgctc cacaacctac caaaggagct tttggacgtc tttccccgtt
1351 caggaaagcg gtttgtgaga aggttggggt agcccaccga cttgggtatg
1401 atgggtttct gtcatactac gacggtgcga aactccgtac ttacacacga
1451 gccgtggaga gtctgcatat cacacctgtt tccgagaggg atagtcattt
1501 gactaccttc gtgaaagcag agaagatatc gacgtctaaa ggtgacccag
1551 cacctcgggt gattcagcct cgaaacccga ggtacaatgt ggaacttgga
1601 agatatctac ggcatatgga atccaagctg atgaaagctg ttgatggcgt
1651 gttcggagaa acaacatgca tcaaaggata ctctgccgac gaggtgggtg
1701 caatttttcg ggagaaatgg gataggtttg ataaacctgt agccataggt
1751 ctcgatgcat ggaggtttga tcaacactgt tccgtggagg ctttgcaata
1801 tgagcatagt ttctacaggg ccatgtaccc tggcaacaag cttttgggca
1851 agttgttgga atggcaactc cataataaag gtaaaggtta tgtccctgat
1901 gggactataa cttatcgtaa ggagggttgt cgtatgagtg gggatataaa
1951 cacttcgttg gggaactatc tgttgatgtg tgcaatggta catgggtaca
2001 tgcgtcattt ggggattaat gaatttagtc tggcgaactg tggggatgat
2051 tgcgttctca ttcttgagcg caggaatctt aaacaggtgc agagaactct
2101 gcctgagtat ttccttaatt tgggttatac catgaaggtt gagcgacctg
2151 tatttcaatt ggaagaggtt gaatttgacc aggcacaccc agtacagttt
2201 caagggggtt ggaagatggt gggaaatgtc cgtactgcta tgagaaaaga
2251 cgtgcactgt gtcaataata tacgcgattt ggcgacgagg agagcttgga
2301 gtaatgctca acatcatgga gggctagcac ttagggctgg tatacctgtg
2351 gttgagactt tttactccag gttcaagctg tatgatacac ctcgtaagca
2401 tcaacgcatt gacacagtca ctaatgttca taagtggcgt ggatcgggtg
2451 ggagctatgt