Sequence of DPV Tobacco necrosis virus A
Tobacco necrosis virus A isolate Velence, complete genome.
ACC No: GQ221829
Dated: 2010-06-10 | Length: 3682 | CRC: -95770309
ID GQ221829; SV 1; linear; genomic RNA; STD; VRL; 3682 BP.
XX
AC GQ221829;
XX
DT 19-MAY-2010 (Rel. 104, Created)
DT 10-JUN-2010 (Rel. 105, Last updated, Version 2)
XX
DE Tobacco necrosis virus A isolate Velence, complete genome.
XX
KW .
XX
OS Tobacco necrosis virus A
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RP 1-3682
RX PUBMED; 20364277.
RA Krizbai L., Nemeth M., Law V., Reed C., Varga A., Hangyal R., James D.;
RT "Molecular characterization of a Hungarian isolate of Tobacco necrosis
RT virus A";
RL Arch. Virol. 155(6):999-1001(2010).
XX
RN [2]
RP 1-3682
RA Krizbai L., Nemeth M., Law V., Reed C., Varga A., Hangyal R., James D.;
RT ;
RL Submitted (28-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL Tree Fruit Research, Sidney Lab, Centre for Plant Health, Canadian Food
RL Inspection Agency, 8801 East Saanich Road, Sidney, BC V8L 1H3, Canada
XX
FH Key Location/Qualifiers
FH
FT source 1. .3682
FT /organism="Tobacco necrosis virus A"
FT /host="Chenopodium quinoa"
FT /strain="A"
FT /isolate="Velence"
FT /mol_type="genomic RNA"
FT /country="Hungary"
FT /isolation_source="greenhouse conditions"
FT /db_xref="taxon:12055"
FT 5'UTR 1. .59
FT CDS 60. .2234
FT /codon_start=1
FT /transl_except=(pos:666. .668,aa:OTHER)
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRP"
FT /protein_id="ADE10194.1"
FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQTDLALI
FT EDTEHLDDINECFEESAGAQSQRTKVVAEGAYAPAKSNRTRRVRKQKKHKFVKYLVNEA
FT RAEFGLPKPTEANRLMVQHFLLRVCKDWGVVTAHVHGNVALALPLVFIPTEDDLLSRAL
FT MNTHATRAAVRGMEHTQGEGWWNNRLGIGGQVGLAFRSKXGCLERRPGFSTSVSRGEHP
FT DLVVIPSGRPEKQRQLLRYSGIGGHLLIGIHNNSLSNLRRGLMERVFFVEGPSGLQDAP
FT KPVKGAFRTLDKFRDLYTKNSWRHTPVTSEQFLMNYSGRKLTIYREAVDSLSHQPLSSR
FT DAKLKTFVKAEKLNLSKKPDPAPRVIQPRSPRYNVCLGRYLRHYEHHAFKTIAKCFGEI
FT TVFKGFTLEQQGEIMRSKWNKYVNPVAVGLDASRFDQHVSVEALKYEHEFYLRDYPNDK
FT QLKWLLKQQLCNVGTAFASDGIIKYKKEGCRMSGDMNTSLGNCILMCAMVYGLKEHLGI
FT QLSLANNGDDCVIVCEKADLIKLTSSIEPYFKQFGFKMEVEKPVDIFERIEFCQTQPVF
FT DGNQYIMVRKPSVVTSKDVTSLIPCQNQAQYAEWLQAVGECGLSINGGIPVMQNFYQML
FT QTGVSRTRFTKTGEFQTNGLGYHSRFMNRVARSPSPETRLSFYLAFGITPDLQEALEIF
FT YDTTKLELDDVIPTDTCRVSGEHLINGLSN"
FT CDS 60. .668
FT /codon_start=1
FT /product="truncated RNA-dependent RNA polymerase"
FT /note="truncated RdRp"
FT /protein_id="ADE10193.1"
FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQTDLALI
FT EDTEHLDDINECFEESAGAQSQRTKVVAEGAYAPAKSNRTRRVRKQKKHKFVKYLVNEA
FT RAEFGLPKPTEANRLMVQHFLLRVCKDWGVVTAHVHGNVALALPLVFIPTEDDLLSRAL
FT MNTHATRAAVRGMEHTQGEGWWNNRLGIGGQVGLAFRSK"
FT CDS 2218. .2436
FT /codon_start=1
FT /product="p23"
FT /protein_id="ADE10195.1"
FT /translation="MDYQTDVSEDNVQVRGRARSSEGKKHNGSGLTGVKRHAVSETAQK
FT SQQGTGNGTMTNIAEEQTITVTYNFNF"
FT CDS 2439. .2609
FT /codon_start=1
FT /product="p6"
FT /protein_id="ADE10196.1"
FT /translation="MAYCRCCDTSPGITLFPYFAILILILSILVVGTPNQQYHHSPSTY
FT EYKTQHISIAK"
FT CDS 2612. .3442
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ADE10197.1"
FT /translation="MAGKKNNNNGQYIVLRTPEQQVEIDQRDARRLARGRMKKMRQPVQ
FT RYINGHGLQNGLSGRGGYVVAPTSGGVVTRPIVPRFSNRGDSTIVRNTEILNNQILAAA
FT GAFNTTNSALIAAAPSWLAGISDLYSKYRWLSCELIYIPKCPTTTSGSVVMAFTYDRNN
FT AAPTTRAQLSQSNKAINFPPYAGYDGAAYLNSSRGAGTAIAIQLDITKLDKPWYPTISS
FT GAFAALGVLDQNQFCPASLVVASDGGPVAATPAGDVFIKYVIEFIEPINPTMNV"
FT 3'UTR 3645. .3682
XX
SQ Sequence 3682 BP; 1002 A; 848 C; 927 G; 905 T; 0 other;
gq221829 Length: 3682 10-JUN-2010 Type: N Check: 6068 ..
1 agtattcata ccaagaatac cgaataggtg caaagcctta ctcagccaaa
51 gagtttaaaa tggagttacc taaccaacac aagcaaacag ccgccgaggg
101 tttcgtttct ttcctaaact ggctatgcaa cccatggcgc cgacaacgta
151 cagtcaacgc tgctgttgcg tttcaaaccg atttagccct cattgaggac
201 acagagcatc tcgatgacat taacgagtgc tttgaagaat cggccggagc
251 tcaatcacag cgcactaagg ttgtggcaga aggtgcatat gcccccgcta
301 aatccaacag aacccgccgg gtccgcaagc agaagaagca caagtttgtc
351 aaatatcttg tgaatgaggc ccgagccgag tttgggttgc ctaaaccaac
401 tgaggcaaac agactcatgg ttcaacactt cctgctcagg gtgtgtaagg
451 actggggtgt tgttactgct cacgtacacg gtaatgttgc acttgcattg
501 cctctggtgt tcattccaac ggaagacgat ctgctgtcaa gagcattgat
551 gaacacgcat gctacaagag ccgctgtacg aggcatggaa cacactcagg
601 gagaagggtg gtggaacaat aggttgggga ttgggggcca ggtaggactg
651 gccttccggt ccaaataggg gtgccttgaa aggaggccag gattctccac
701 gtccgtttcg cgtggggagc atcctgatct ggtggtcata ccatcagggc
751 gccctgagaa acagcgtcag ttgttacgct atagtggtat aggcggccat
801 ttattaatcg gcatccacaa caactctctc tccaacttac gtaggggtct
851 gatggagaga gtatttttcg tcgagggacc ttctggtctt caagacgccc
901 ctaagcccgt caagggtgca ttccgaaccc ttgataaatt tcgtgatctc
951 tataccaaaa atagttggcg tcatacccct gtaactagtg agcaattcct
1001 aatgaattac tcgggcagga agctgactat ttaccgagaa gcagttgata
1051 gtttgtcgca tcagccgctc agctccaggg atgcgaaatt gaaaacattc
1101 gttaaggccg aaaaacttaa cctttctaag aagcctgatc ctgctcctag
1151 ggtcatccaa cctagatcgc ctcggtacaa cgtttgtttg ggcaggtacc
1201 tccgacatta tgaacatcat gcgttcaaaa ccattgctaa atgctttggg
1251 gaaatcacgg tctttaaagg gtttactctc gagcaacaag gcgaaatcat
1301 gcggtctaag tggaacaaat atgttaatcc cgttgcggtc ggactcgatg
1351 ccagtcggtt tgaccaacac gtgtcagttg aagcacttaa gtacgagcat
1401 gaattttatc tgagagacta cccgaatgat aaacagctaa aatggttgtt
1451 aaaacaacaa ctgtgcaatg tcggtacggc atttgctagt gatggcatca
1501 taaagtacaa gaaggaaggt tgcagaatga gtggggacat gaacactagt
1551 ttgggcaatt gcatactcat gtgcgcaatg gtctacggtt tgaaggaaca
1601 cctgggcatc caattgtcgt tggcaaacaa cggggatgac tgcgtcattg
1651 tctgtgagaa agcggattta attaaattga cgagcagcat cgagccgtat
1701 ttcaagcaat ttggattcaa aatggaggtg gaaaaacccg tggacatatt
1751 tgaaagaatt gagttttgcc aaacccaacc agtgtttgat ggcaaccagt
1801 acataatggt aagaaagcct tccgtagtaa cttccaaaga tgtcactagt
1851 cttattccgt gtcagaatca agcacaatat gcagaatggc tgcaagctgt
1901 aggtgagtgt ggcttgagca ttaatggagg gattccggtc atgcagaatt
1951 tctatcaaat gctccaaact ggcgttagcc gcacaagatt taccaagacc
2001 ggcgagttcc agacgaatgg cttggggtac cactctagat ttatgaatag
2051 agtggcccgg agtccttcgc ctgagacccg tttgtccttt tacttagctt
2101 ttggtatcac accagacctc caggaagcat tggagatctt ctatgatacc
2151 acgaagctgg aattggacga tgttatccca actgatacct gccgagtatc
2201 aggagagcat ttaatcaatg gattatcaaa ctgatgtcag tgaggacaac
2251 gtgcaagtac gcggtcgggc taggagtagt gagggtaaga agcacaatgg
2301 ttcgggatta actggcgtta agcgtcacgc ggtgagtgaa acagctcaga
2351 aatcacagca aggtactggc aacggaacaa tgaccaacat agccgaagag
2401 cagaccatta ccgtgacata caactttaac ttttagttat ggcgtattgt
2451 cgctgttgtg atacttcacc aggtattaca ttattccctt actttgcaat
2501 tctcatcctc atattatcaa tactggttgt tggaactcca aaccagcaat
2551 atcatcattc tcctagtact tacgagtata agactcaaca tatttcgatc
2601 gcaaaataga catggcagga aagaagaaca acaacaacgg tcagtacatc
2651 gtactgcgta ctcctgagca acaggtggaa attgatcagc gtgatgctcg
2701 cagactggca cggggccgca tgaagaaaat gaggcagccg gttcaacgat
2751 acatcaatgg gcatgggcta cagaatggat tgtcagggcg tggtggttat
2801 gtcgttgcac ccacatctgg tggtgtggtg actcgaccca tcgtgcctag
2851 gttttcgaac cgaggcgact cgactattgt acgcaatacc gagatcctga
2901 acaatcaaat attagcagca gctggcgcgt tcaacactac taattccgca
2951 ctgattgcag cggcaccgtc atggttggct ggcatttcag atttgtacag
3001 caaatacaga tggctatctt gtgagctcat ctacatacct aaatgtccaa
3051 ccacaacaag tggatctgtt gtaatggctt tcacatatga tcgcaataac
3101 gctgccccca caactagggc gcagttgtca cagtccaata aagccatcaa
3151 ctttccaccc tatgcagggt atgacggagc ggcgtacttg aactcttcga
3201 gaggtgctgg gactgccatt gccatccaat tggacatcac caaattggac
3251 aagccttggt accctaccat ctcgtcaggt gcgtttgccg ccctgggggt
3301 gttggatcag aaccagttct gcccagcttc cctggtggtc gctagtgatg
3351 gaggtcccgt ggcagctacg cctgctgggg atgttttcat caagtacgtg
3401 attgagttca ttgaaccaat caaccctaca atgaacgtct agttcttgta
3451 ctgtaactcg gctaatgcct acggtagagt cacacgtgtg gagatggatg
3501 ctggatcctg gaaaacaggt ttaacgggta gggggtggtg cccctaccga
3551 cgcatcactc cagataccac acgtactcgg ctatggcagg gtctgtcgag
3601 gtttgtgcgc catgatccac tggaaacggt ggtgaggggg gtagcacatt
3651 tcatccagat tgaggggctt ttgccccacc cc