Sequence of DPV Tobacco necrosis virus A
Tobacco necrosis virus A isolate Velence, complete genome.
ACC No: GQ221829
Dated: 2010-06-10 | Length: 3682 | CRC: -95770309
ID GQ221829; SV 1; linear; genomic RNA; STD; VRL; 3682 BP. XX AC GQ221829; XX DT 19-MAY-2010 (Rel. 104, Created) DT 10-JUN-2010 (Rel. 105, Last updated, Version 2) XX DE Tobacco necrosis virus A isolate Velence, complete genome. XX KW . XX OS Tobacco necrosis virus A OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Necrovirus. XX RN [1] RP 1-3682 RX PUBMED; 20364277. RA Krizbai L., Nemeth M., Law V., Reed C., Varga A., Hangyal R., James D.; RT "Molecular characterization of a Hungarian isolate of Tobacco necrosis RT virus A"; RL Arch. Virol. 155(6):999-1001(2010). XX RN [2] RP 1-3682 RA Krizbai L., Nemeth M., Law V., Reed C., Varga A., Hangyal R., James D.; RT ; RL Submitted (28-MAY-2009) to the EMBL/GenBank/DDBJ databases. RL Tree Fruit Research, Sidney Lab, Centre for Plant Health, Canadian Food RL Inspection Agency, 8801 East Saanich Road, Sidney, BC V8L 1H3, Canada XX FH Key Location/Qualifiers FH FT source 1. .3682 FT /organism="Tobacco necrosis virus A" FT /host="Chenopodium quinoa" FT /strain="A" FT /isolate="Velence" FT /mol_type="genomic RNA" FT /country="Hungary" FT /isolation_source="greenhouse conditions" FT /db_xref="taxon:12055" FT 5'UTR 1. .59 FT CDS 60. .2234 FT /codon_start=1 FT /transl_except=(pos:666. .668,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="RdRP" FT /protein_id="ADE10194.1" FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQTDLALI FT EDTEHLDDINECFEESAGAQSQRTKVVAEGAYAPAKSNRTRRVRKQKKHKFVKYLVNEA FT RAEFGLPKPTEANRLMVQHFLLRVCKDWGVVTAHVHGNVALALPLVFIPTEDDLLSRAL FT MNTHATRAAVRGMEHTQGEGWWNNRLGIGGQVGLAFRSKXGCLERRPGFSTSVSRGEHP FT DLVVIPSGRPEKQRQLLRYSGIGGHLLIGIHNNSLSNLRRGLMERVFFVEGPSGLQDAP FT KPVKGAFRTLDKFRDLYTKNSWRHTPVTSEQFLMNYSGRKLTIYREAVDSLSHQPLSSR FT DAKLKTFVKAEKLNLSKKPDPAPRVIQPRSPRYNVCLGRYLRHYEHHAFKTIAKCFGEI FT TVFKGFTLEQQGEIMRSKWNKYVNPVAVGLDASRFDQHVSVEALKYEHEFYLRDYPNDK FT QLKWLLKQQLCNVGTAFASDGIIKYKKEGCRMSGDMNTSLGNCILMCAMVYGLKEHLGI FT QLSLANNGDDCVIVCEKADLIKLTSSIEPYFKQFGFKMEVEKPVDIFERIEFCQTQPVF FT DGNQYIMVRKPSVVTSKDVTSLIPCQNQAQYAEWLQAVGECGLSINGGIPVMQNFYQML FT QTGVSRTRFTKTGEFQTNGLGYHSRFMNRVARSPSPETRLSFYLAFGITPDLQEALEIF FT YDTTKLELDDVIPTDTCRVSGEHLINGLSN" FT CDS 60. .668 FT /codon_start=1 FT /product="truncated RNA-dependent RNA polymerase" FT /note="truncated RdRp" FT /protein_id="ADE10193.1" FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQTDLALI FT EDTEHLDDINECFEESAGAQSQRTKVVAEGAYAPAKSNRTRRVRKQKKHKFVKYLVNEA FT RAEFGLPKPTEANRLMVQHFLLRVCKDWGVVTAHVHGNVALALPLVFIPTEDDLLSRAL FT MNTHATRAAVRGMEHTQGEGWWNNRLGIGGQVGLAFRSK" FT CDS 2218. .2436 FT /codon_start=1 FT /product="p23" FT /protein_id="ADE10195.1" FT /translation="MDYQTDVSEDNVQVRGRARSSEGKKHNGSGLTGVKRHAVSETAQK FT SQQGTGNGTMTNIAEEQTITVTYNFNF" FT CDS 2439. .2609 FT /codon_start=1 FT /product="p6" FT /protein_id="ADE10196.1" FT /translation="MAYCRCCDTSPGITLFPYFAILILILSILVVGTPNQQYHHSPSTY FT EYKTQHISIAK" FT CDS 2612. .3442 FT /codon_start=1 FT /product="coat protein" FT /protein_id="ADE10197.1" FT /translation="MAGKKNNNNGQYIVLRTPEQQVEIDQRDARRLARGRMKKMRQPVQ FT RYINGHGLQNGLSGRGGYVVAPTSGGVVTRPIVPRFSNRGDSTIVRNTEILNNQILAAA FT GAFNTTNSALIAAAPSWLAGISDLYSKYRWLSCELIYIPKCPTTTSGSVVMAFTYDRNN FT AAPTTRAQLSQSNKAINFPPYAGYDGAAYLNSSRGAGTAIAIQLDITKLDKPWYPTISS FT GAFAALGVLDQNQFCPASLVVASDGGPVAATPAGDVFIKYVIEFIEPINPTMNV" FT 3'UTR 3645. .3682 XX SQ Sequence 3682 BP; 1002 A; 848 C; 927 G; 905 T; 0 other; gq221829 Length: 3682 10-JUN-2010 Type: N Check: 6068 .. 1 agtattcata ccaagaatac cgaataggtg caaagcctta ctcagccaaa 51 gagtttaaaa tggagttacc taaccaacac aagcaaacag ccgccgaggg 101 tttcgtttct ttcctaaact ggctatgcaa cccatggcgc cgacaacgta 151 cagtcaacgc tgctgttgcg tttcaaaccg atttagccct cattgaggac 201 acagagcatc tcgatgacat taacgagtgc tttgaagaat cggccggagc 251 tcaatcacag cgcactaagg ttgtggcaga aggtgcatat gcccccgcta 301 aatccaacag aacccgccgg gtccgcaagc agaagaagca caagtttgtc 351 aaatatcttg tgaatgaggc ccgagccgag tttgggttgc ctaaaccaac 401 tgaggcaaac agactcatgg ttcaacactt cctgctcagg gtgtgtaagg 451 actggggtgt tgttactgct cacgtacacg gtaatgttgc acttgcattg 501 cctctggtgt tcattccaac ggaagacgat ctgctgtcaa gagcattgat 551 gaacacgcat gctacaagag ccgctgtacg aggcatggaa cacactcagg 601 gagaagggtg gtggaacaat aggttgggga ttgggggcca ggtaggactg 651 gccttccggt ccaaataggg gtgccttgaa aggaggccag gattctccac 701 gtccgtttcg cgtggggagc atcctgatct ggtggtcata ccatcagggc 751 gccctgagaa acagcgtcag ttgttacgct atagtggtat aggcggccat 801 ttattaatcg gcatccacaa caactctctc tccaacttac gtaggggtct 851 gatggagaga gtatttttcg tcgagggacc ttctggtctt caagacgccc 901 ctaagcccgt caagggtgca ttccgaaccc ttgataaatt tcgtgatctc 951 tataccaaaa atagttggcg tcatacccct gtaactagtg agcaattcct 1001 aatgaattac tcgggcagga agctgactat ttaccgagaa gcagttgata 1051 gtttgtcgca tcagccgctc agctccaggg atgcgaaatt gaaaacattc 1101 gttaaggccg aaaaacttaa cctttctaag aagcctgatc ctgctcctag 1151 ggtcatccaa cctagatcgc ctcggtacaa cgtttgtttg ggcaggtacc 1201 tccgacatta tgaacatcat gcgttcaaaa ccattgctaa atgctttggg 1251 gaaatcacgg tctttaaagg gtttactctc gagcaacaag gcgaaatcat 1301 gcggtctaag tggaacaaat atgttaatcc cgttgcggtc ggactcgatg 1351 ccagtcggtt tgaccaacac gtgtcagttg aagcacttaa gtacgagcat 1401 gaattttatc tgagagacta cccgaatgat aaacagctaa aatggttgtt 1451 aaaacaacaa ctgtgcaatg tcggtacggc atttgctagt gatggcatca 1501 taaagtacaa gaaggaaggt tgcagaatga gtggggacat gaacactagt 1551 ttgggcaatt gcatactcat gtgcgcaatg gtctacggtt tgaaggaaca 1601 cctgggcatc caattgtcgt tggcaaacaa cggggatgac tgcgtcattg 1651 tctgtgagaa agcggattta attaaattga cgagcagcat cgagccgtat 1701 ttcaagcaat ttggattcaa aatggaggtg gaaaaacccg tggacatatt 1751 tgaaagaatt gagttttgcc aaacccaacc agtgtttgat ggcaaccagt 1801 acataatggt aagaaagcct tccgtagtaa cttccaaaga tgtcactagt 1851 cttattccgt gtcagaatca agcacaatat gcagaatggc tgcaagctgt 1901 aggtgagtgt ggcttgagca ttaatggagg gattccggtc atgcagaatt 1951 tctatcaaat gctccaaact ggcgttagcc gcacaagatt taccaagacc 2001 ggcgagttcc agacgaatgg cttggggtac cactctagat ttatgaatag 2051 agtggcccgg agtccttcgc ctgagacccg tttgtccttt tacttagctt 2101 ttggtatcac accagacctc caggaagcat tggagatctt ctatgatacc 2151 acgaagctgg aattggacga tgttatccca actgatacct gccgagtatc 2201 aggagagcat ttaatcaatg gattatcaaa ctgatgtcag tgaggacaac 2251 gtgcaagtac gcggtcgggc taggagtagt gagggtaaga agcacaatgg 2301 ttcgggatta actggcgtta agcgtcacgc ggtgagtgaa acagctcaga 2351 aatcacagca aggtactggc aacggaacaa tgaccaacat agccgaagag 2401 cagaccatta ccgtgacata caactttaac ttttagttat ggcgtattgt 2451 cgctgttgtg atacttcacc aggtattaca ttattccctt actttgcaat 2501 tctcatcctc atattatcaa tactggttgt tggaactcca aaccagcaat 2551 atcatcattc tcctagtact tacgagtata agactcaaca tatttcgatc 2601 gcaaaataga catggcagga aagaagaaca acaacaacgg tcagtacatc 2651 gtactgcgta ctcctgagca acaggtggaa attgatcagc gtgatgctcg 2701 cagactggca cggggccgca tgaagaaaat gaggcagccg gttcaacgat 2751 acatcaatgg gcatgggcta cagaatggat tgtcagggcg tggtggttat 2801 gtcgttgcac ccacatctgg tggtgtggtg actcgaccca tcgtgcctag 2851 gttttcgaac cgaggcgact cgactattgt acgcaatacc gagatcctga 2901 acaatcaaat attagcagca gctggcgcgt tcaacactac taattccgca 2951 ctgattgcag cggcaccgtc atggttggct ggcatttcag atttgtacag 3001 caaatacaga tggctatctt gtgagctcat ctacatacct aaatgtccaa 3051 ccacaacaag tggatctgtt gtaatggctt tcacatatga tcgcaataac 3101 gctgccccca caactagggc gcagttgtca cagtccaata aagccatcaa 3151 ctttccaccc tatgcagggt atgacggagc ggcgtacttg aactcttcga 3201 gaggtgctgg gactgccatt gccatccaat tggacatcac caaattggac 3251 aagccttggt accctaccat ctcgtcaggt gcgtttgccg ccctgggggt 3301 gttggatcag aaccagttct gcccagcttc cctggtggtc gctagtgatg 3351 gaggtcccgt ggcagctacg cctgctgggg atgttttcat caagtacgtg 3401 attgagttca ttgaaccaat caaccctaca atgaacgtct agttcttgta 3451 ctgtaactcg gctaatgcct acggtagagt cacacgtgtg gagatggatg 3501 ctggatcctg gaaaacaggt ttaacgggta gggggtggtg cccctaccga 3551 cgcatcactc cagataccac acgtactcgg ctatggcagg gtctgtcgag 3601 gtttgtgcgc catgatccac tggaaacggt ggtgaggggg gtagcacatt 3651 tcatccagat tgaggggctt ttgccccacc cc