Sequence of DPV Bhendi yellow vein mosaic virus

Okra leaf curl virus isolate New Delhi segment DNA-A, complete sequence.

ACC No: GQ245760

Dated: 2010-07-02 | Length: 2742 | CRC: 441743392

                
ID   GQ245760; SV 1; circular; genomic DNA; STD; VRL; 2742 BP.
XX
AC   GQ245760;
XX
DT   02-JUL-2010 (Rel. 105, Created)
DT   02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE   Okra leaf curl virus isolate New Delhi segment DNA-A, complete sequence.
XX
KW   .
XX
OS   Okra leaf curl virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2742
RA   Singh A.K., Chattopadhyay B., Chakraborty S.;
RT   "Occurrence of Okra leaf curl disease in New Delhi, India";
RL   Unpublished.
XX
RN   [2]
RP   1-2742
RA   Singh A.K., Chattopadhyay B., Chakraborty S.;
RT   ;
RL   Submitted (04-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru
RL   University, New Delhi, Delhi 110067, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2742
FT                   /organism="Okra leaf curl virus"
FT                   /segment="DNA-A"
FT                   /host="okra"
FT                   /isolate="New Delhi"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collected_by="A.K. Singh"
FT                   /collection_date="Jun-2008"
FT                   /db_xref="taxon:163654"
FT   gene            121. .486
FT                   /gene="AV2"
FT   CDS             121. .486
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="pre-coat protein"
FT                   /function="may be responsible for viral pathogenesis"
FT                   /protein_id="ADG29346.1"
FT                   /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL
FT                   ICILRSRNYVEASCRYRHFYARVESTSASELRQPIQQPCCCAHCPRHKTTGMDKQAYEQ
FT                   EAQNVSDVQKSGCSKGL"
FT   gene            281. .1051
FT                   /gene="AV1"
FT   CDS             281. .1051
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /function="responsible for encapsidation of viral DNA and
FT                   insect transmission"
FT                   /protein_id="ADG29345.1"
FT                   /translation="MSKRAADIVISTPASKVRRRLNFGSPYSSRVAAPIVRVTKQQAWT
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT                   IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFYMFDNEP
FT                   STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVKVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   gene            complement(629. .946)
FT                   /gene="AC5"
FT   CDS             complement(629. .946)
FT                   /codon_start=1
FT                   /gene="AC5"
FT                   /product="AC5"
FT                   /protein_id="ADG29351.1"
FT                   /translation="MILVFSCFLLIVNNIIVNLDKLLDQRLFLTRILTTRDGCMPFPQH
FT                   LVTIPMTILHGRRTGFVVKHVKYLTKILGFIYRSSITNKEKHHRIRMVLGLDVLVHPYL
FT                   T"
FT   gene            complement(1054. .1458)
FT                   /gene="AC3"
FT   CDS             complement(1054. .1458)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="REn"
FT                   /function="enhances replication of viral DNA"
FT                   /protein_id="ADG29349.1"
FT                   /translation="MDSRTGERITAAHSTNGVFIWEVPNPLYFKILNHDNRPFTTNMDI
FT                   ITMRIQFNYNLRKALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISINL
FT                   VIKAVEHVLYNVINQTMYVDQYSDIKFKLY"
FT   gene            complement(1151. .1603)
FT                   /gene="AC2"
FT   CDS             complement(1151. .1603)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="TrAP"
FT                   /function="required for transactivation of virion sense ORF
FT                   and a suppressor of gene silencing"
FT                   /protein_id="ADG29348.1"
FT                   /translation="MQHSSSSPNRCTRVPIKVQHREAKRAHRRKRVDLECGCSYYLSIN
FT                   CHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP
FT                   SESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCNLN"
FT   gene            complement(1500. .2588)
FT                   /gene="AC1"
FT   CDS             complement(1500. .2588)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="Rep"
FT                   /function="required for replication"
FT                   /protein_id="ADG29347.1"
FT                   /translation="MPSKRFQIYSKNYFLTYPKCSLTKEEALSQIQNLQTPTNKKFIKI
FT                   CKELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYID
FT                   KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDYVLQFHN
FT                   LNANLDRIFTPPLEVYVSPFLSSSFDQVPEELEEWVSENVMDAAARPLRPLSLVLEGDS
FT                   RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQ
FT                   SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLEEEKNSALKAWALKNAAFVFLTQPLY
FT                   SGTNQSSTQGSEESAQEETSGP"
FT   gene            complement(2144. .2440)
FT                   /gene="AC4"
FT   CDS             complement(2144. .2440)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4"
FT                   /function="required for viral pathogenesis and a suppressor
FT                   of gene silencing"
FT                   /protein_id="ADG29350.1"
FT                   /translation="MRMGNLIFTCSSNSRGNTSARISDSSTWSPQAGQHISIRTFRELN
FT                   QAQMSSPTSTRTETPSNGESFRSMDDLQEGDSRQPTTLTPQHLTQAVSQRLLE"
XX
SQ   Sequence 2742 BP; 724 A; 544 C; 641 G; 833 T; 0 other;

gq245760 Length: 2742  02-JUL-2010  Type: N  Check: 5971  ..

       1  accggatggc cgcgcgattt tttaaagtgg tgggtccaga acgcacgacg
      51  atgcagactc aaagcttaga taacgctcct tcggctataa gtacttgcgc
     101  actaagtttc aattcaaaaa atgtgggatc cactattaaa cgaatttccg
     151  gatacggttc acgggtttcg ttgtatgcta tctgtaaaat atttgcaact
     201  tttgtcgcag gattattctc cagatacgct tgggtacgat ttaatacggg
     251  atttaatttg tattttacgc tcccgtaatt atgtcgaagc gagctgccga
     301  tatcgtcatt tctacgcccg cgtcgaaagt acgtcggcgt ctgaacttcg
     351  gcagcccata cagcagccgt gttgctgcgc ccattgtccg cgtcacaaaa
     401  caacaggcat ggacaaacag gcctatgaac aggaagccca gaatgtatcg
     451  gatgtacaga agtccggatg ttccaagggg ttgtgagggt ccctgtaagg
     501  tacaatcctt tgagtctaga cacgatgttg ttcatattgg taaggtaatg
     551  tgtatttctg atgttacgcg tggagtcggt ttgacccatc gtataggtaa
     601  gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg
     651  agaacatcaa gaccaagaac catacgaatt cggtgatgtt tttccttgtt
     701  cgtgatcgac gaccggtaga taaaccccag gattttggtg aggtatttta
     751  catgtttgac aacgaaccca gtacggcgac cgtgaagaat agtcataggg
     801  atcgttacca ggtgttgagg aaatggcatg caaccgtcac gggtggtcaa
     851  tatgcgagta aggaacaggc gttggtcaag aagtttgtca aggttaacaa
     901  ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg
     951  agaatgcgtt aatgctttat atggcttgta cccacgctag taacccagtt
    1001  tatgctacgc ttaagattcg tatttatttt tatgactctg taacgaattg
    1051  aaattaataa agtttgaatt ttatatctga atattggtct acatacattg
    1101  tttgattaat tacattgtac aatacatgtt caacggcttt aataactaaa
    1151  ttaattgaga ttacacctag attgttgaga tatttgagga cttgggtttt
    1201  gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagattc
    1251  ggaaggttag aaaacacttg tgcactccca gagctttccg aaggttgtag
    1301  ttgaattgga tcctcattgt tatgatgtcc atgttcgtcg tgaatggacg
    1351  gttgtcgtgg ttgaggattt tgaaataaag gggatttgga acctcccaga
    1401  taaagacgcc attcgttgaa tgagctgcag tgatgcgttc ccctgtgcga
    1451  gaatccatgg ttgtggcagt tgatacttag gtaatagctg catccacact
    1501  caaggtccac tcgtttcctc ctgtgcgctc tcttcgcttc cctgtgttga
    1551  actttgattg gtacccgagt acaacggttg ggtgaggaag acgaatgctg
    1601  cattttttaa agcccacgct tttaaagctg agttcttttc ctcttccaag
    1651  aactctttat agcttgcgtt ggggcctgga ttgcagagga agattgttgg
    1701  tatgccccct ttaatttgaa ctggcttccc gtacttggtg tttgattgcc
    1751  aatccctttg ggcccccatg aattctttaa agtgtttcag ataatgcggg
    1801  tcaacatcat ctataatgtt gaaccacgca tcgtttgaat acactttagg
    1851  gcttagatct aggtgaccac ataaatagtt atgtgggcct aatgacctag
    1901  cccacatcgt tttgcccgta cgactgtctc cctctaagac taaactcaaa
    1951  ggacgcagag gccgcgcagc ggcgtccatg acgttttccg atacccattc
    2001  ctcaagttct tctggaactt gatcgaaaga agaagataaa aaaggagaaa
    2051  cataaacctc caatggaggt gtaaaaatcc tatctaaatt ggcatttaaa
    2101  ttatgaaatt gtaacacgta atccttaggt gctaactctc taattactct
    2151  aagagcctct gacttactgc ctgcgttaag tgctgcggcg taagcgtcgt
    2201  tggctgtctg ctgtccccct cttgcagatc gtccatcgat ctgaaactct
    2251  ccccattcga gggtgtctcc gtccttgtcg atgtaggact tgacatctga
    2301  gcttgattta gctccctgaa tgttcggatg gaaatgtgct gacctgcttg
    2351  gggagaccag gtcgaagaat cgctgattct ggcacttgta tttcccctcg
    2401  aattggatga gcacgtgaag atgaggttcc ccattctcat gaagctcttt
    2451  gcaaattttg atgaattttt tatttgttgg agtttgtagg ttttggattt
    2501  gggaaagtgc ttcctcttta gtaagagagc attttggata agtgagaaaa
    2551  taatttttgg aatatatttg aaagcgttta gaaggcatgt tgactaaatt
    2601  tgagtaccga ttgactcgct ctggcaactc tcccctggta tatcggtacc
    2651  caatatatag tgagtaccaa atggcatatg tgtaattttg taatgaaatt
    2701  caaaatcctc acgctccaaa aagcggccat ccgtataata tt