Sequence of DPV Bhendi yellow vein mosaic virus
Okra leaf curl virus isolate New Delhi segment DNA-A, complete sequence.
ACC No: GQ245760
Dated: 2010-07-02 | Length: 2742 | CRC: 441743392
ID GQ245760; SV 1; circular; genomic DNA; STD; VRL; 2742 BP. XX AC GQ245760; XX DT 02-JUL-2010 (Rel. 105, Created) DT 02-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Okra leaf curl virus isolate New Delhi segment DNA-A, complete sequence. XX KW . XX OS Okra leaf curl virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2742 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Occurrence of Okra leaf curl disease in New Delhi, India"; RL Unpublished. XX RN [2] RP 1-2742 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (04-JUN-2009) to the EMBL/GenBank/DDBJ databases. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX FH Key Location/Qualifiers FH FT source 1. .2742 FT /organism="Okra leaf curl virus" FT /segment="DNA-A" FT /host="okra" FT /isolate="New Delhi" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="A.K. Singh" FT /collection_date="Jun-2008" FT /db_xref="taxon:163654" FT gene 121. .486 FT /gene="AV2" FT CDS 121. .486 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /function="may be responsible for viral pathogenesis" FT /protein_id="ADG29346.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL FT ICILRSRNYVEASCRYRHFYARVESTSASELRQPIQQPCCCAHCPRHKTTGMDKQAYEQ FT EAQNVSDVQKSGCSKGL" FT gene 281. .1051 FT /gene="AV1" FT CDS 281. .1051 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /function="responsible for encapsidation of viral DNA and FT insect transmission" FT /protein_id="ADG29345.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYSSRVAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFYMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVKVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(629. .946) FT /gene="AC5" FT CDS complement(629. .946) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /protein_id="ADG29351.1" FT /translation="MILVFSCFLLIVNNIIVNLDKLLDQRLFLTRILTTRDGCMPFPQH FT LVTIPMTILHGRRTGFVVKHVKYLTKILGFIYRSSITNKEKHHRIRMVLGLDVLVHPYL FT T" FT gene complement(1054. .1458) FT /gene="AC3" FT CDS complement(1054. .1458) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /function="enhances replication of viral DNA" FT /protein_id="ADG29349.1" FT /translation="MDSRTGERITAAHSTNGVFIWEVPNPLYFKILNHDNRPFTTNMDI FT ITMRIQFNYNLRKALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVINQTMYVDQYSDIKFKLY" FT gene complement(1151. .1603) FT /gene="AC2" FT CDS complement(1151. .1603) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /function="required for transactivation of virion sense ORF FT and a suppressor of gene silencing" FT /protein_id="ADG29348.1" FT /translation="MQHSSSSPNRCTRVPIKVQHREAKRAHRRKRVDLECGCSYYLSIN FT CHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP FT SESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCNLN" FT gene complement(1500. .2588) FT /gene="AC1" FT CDS complement(1500. .2588) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /function="required for replication" FT /protein_id="ADG29347.1" FT /translation="MPSKRFQIYSKNYFLTYPKCSLTKEEALSQIQNLQTPTNKKFIKI FT CKELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYID FT KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDYVLQFHN FT LNANLDRIFTPPLEVYVSPFLSSSFDQVPEELEEWVSENVMDAAARPLRPLSLVLEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLEEEKNSALKAWALKNAAFVFLTQPLY FT SGTNQSSTQGSEESAQEETSGP" FT gene complement(2144. .2440) FT /gene="AC4" FT CDS complement(2144. .2440) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /function="required for viral pathogenesis and a suppressor FT of gene silencing" FT /protein_id="ADG29350.1" FT /translation="MRMGNLIFTCSSNSRGNTSARISDSSTWSPQAGQHISIRTFRELN FT QAQMSSPTSTRTETPSNGESFRSMDDLQEGDSRQPTTLTPQHLTQAVSQRLLE" XX SQ Sequence 2742 BP; 724 A; 544 C; 641 G; 833 T; 0 other; gq245760 Length: 2742 02-JUL-2010 Type: N Check: 5971 .. 1 accggatggc cgcgcgattt tttaaagtgg tgggtccaga acgcacgacg 51 atgcagactc aaagcttaga taacgctcct tcggctataa gtacttgcgc 101 actaagtttc aattcaaaaa atgtgggatc cactattaaa cgaatttccg 151 gatacggttc acgggtttcg ttgtatgcta tctgtaaaat atttgcaact 201 tttgtcgcag gattattctc cagatacgct tgggtacgat ttaatacggg 251 atttaatttg tattttacgc tcccgtaatt atgtcgaagc gagctgccga 301 tatcgtcatt tctacgcccg cgtcgaaagt acgtcggcgt ctgaacttcg 351 gcagcccata cagcagccgt gttgctgcgc ccattgtccg cgtcacaaaa 401 caacaggcat ggacaaacag gcctatgaac aggaagccca gaatgtatcg 451 gatgtacaga agtccggatg ttccaagggg ttgtgagggt ccctgtaagg 501 tacaatcctt tgagtctaga cacgatgttg ttcatattgg taaggtaatg 551 tgtatttctg atgttacgcg tggagtcggt ttgacccatc gtataggtaa 601 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg 651 agaacatcaa gaccaagaac catacgaatt cggtgatgtt tttccttgtt 701 cgtgatcgac gaccggtaga taaaccccag gattttggtg aggtatttta 751 catgtttgac aacgaaccca gtacggcgac cgtgaagaat agtcataggg 801 atcgttacca ggtgttgagg aaatggcatg caaccgtcac gggtggtcaa 851 tatgcgagta aggaacaggc gttggtcaag aagtttgtca aggttaacaa 901 ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg 951 agaatgcgtt aatgctttat atggcttgta cccacgctag taacccagtt 1001 tatgctacgc ttaagattcg tatttatttt tatgactctg taacgaattg 1051 aaattaataa agtttgaatt ttatatctga atattggtct acatacattg 1101 tttgattaat tacattgtac aatacatgtt caacggcttt aataactaaa 1151 ttaattgaga ttacacctag attgttgaga tatttgagga cttgggtttt 1201 gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagattc 1251 ggaaggttag aaaacacttg tgcactccca gagctttccg aaggttgtag 1301 ttgaattgga tcctcattgt tatgatgtcc atgttcgtcg tgaatggacg 1351 gttgtcgtgg ttgaggattt tgaaataaag gggatttgga acctcccaga 1401 taaagacgcc attcgttgaa tgagctgcag tgatgcgttc ccctgtgcga 1451 gaatccatgg ttgtggcagt tgatacttag gtaatagctg catccacact 1501 caaggtccac tcgtttcctc ctgtgcgctc tcttcgcttc cctgtgttga 1551 actttgattg gtacccgagt acaacggttg ggtgaggaag acgaatgctg 1601 cattttttaa agcccacgct tttaaagctg agttcttttc ctcttccaag 1651 aactctttat agcttgcgtt ggggcctgga ttgcagagga agattgttgg 1701 tatgccccct ttaatttgaa ctggcttccc gtacttggtg tttgattgcc 1751 aatccctttg ggcccccatg aattctttaa agtgtttcag ataatgcggg 1801 tcaacatcat ctataatgtt gaaccacgca tcgtttgaat acactttagg 1851 gcttagatct aggtgaccac ataaatagtt atgtgggcct aatgacctag 1901 cccacatcgt tttgcccgta cgactgtctc cctctaagac taaactcaaa 1951 ggacgcagag gccgcgcagc ggcgtccatg acgttttccg atacccattc 2001 ctcaagttct tctggaactt gatcgaaaga agaagataaa aaaggagaaa 2051 cataaacctc caatggaggt gtaaaaatcc tatctaaatt ggcatttaaa 2101 ttatgaaatt gtaacacgta atccttaggt gctaactctc taattactct 2151 aagagcctct gacttactgc ctgcgttaag tgctgcggcg taagcgtcgt 2201 tggctgtctg ctgtccccct cttgcagatc gtccatcgat ctgaaactct 2251 ccccattcga gggtgtctcc gtccttgtcg atgtaggact tgacatctga 2301 gcttgattta gctccctgaa tgttcggatg gaaatgtgct gacctgcttg 2351 gggagaccag gtcgaagaat cgctgattct ggcacttgta tttcccctcg 2401 aattggatga gcacgtgaag atgaggttcc ccattctcat gaagctcttt 2451 gcaaattttg atgaattttt tatttgttgg agtttgtagg ttttggattt 2501 gggaaagtgc ttcctcttta gtaagagagc attttggata agtgagaaaa 2551 taatttttgg aatatatttg aaagcgttta gaaggcatgt tgactaaatt 2601 tgagtaccga ttgactcgct ctggcaactc tcccctggta tatcggtacc 2651 caatatatag tgagtaccaa atggcatatg tgtaattttg taatgaaatt 2701 caaaatcctc acgctccaaa aagcggccat ccgtataata tt