Sequence of DPV Carnation Italian ringspot virus
Carnation Italian ringspot virus isolate OE11 replication-associated protein 2, replication-associated protein 1, coat protein, movement protein, and silencing suppressor genes, complete cds.
ACC No: GQ259478
Dated: 2009-10-14 | Length: 4612 | CRC: 321196018
ID GQ259478; SV 1; linear; genomic RNA; STD; VRL; 4612 BP.
XX
AC GQ259478;
XX
DT 14-OCT-2009 (Rel. 102, Created)
DT 14-OCT-2009 (Rel. 102, Last updated, Version 1)
XX
DE Carnation Italian ringspot virus isolate OE11 replication-associated
DE protein 2, replication-associated protein 1, coat protein, movement
DE protein, and silencing suppressor genes, complete cds.
XX
KW .
XX
OS Carnation Italian ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Tombusvirus.
XX
RN [1]
RP 1-4612
RX PUBMED; 19768632.
RA Koenig R., Lesemann D.E., Pfeilstetter E.;
RT "New isolates of carnation Italian ringspot virus differ from the original
RT one by having replication-associated proteins with a typical
RT tombusvirus-like N-terminus and by inducing peroxisome- rather than
RT mitochondrion-derived multivesicular bodies";
RL Arch. Virol. 154(10):1695-1698(2009).
XX
RN [2]
RP 1-4612
RA Koenig R.;
RT ;
RL Submitted (11-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut,
RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig
RL D38104, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .4612
FT /organism="Carnation Italian ringspot virus"
FT /host="cherry tree"
FT /isolate="OE11"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:39443"
FT CDS 142. .2598
FT /codon_start=1
FT /transl_except=(pos:1030. .1032,aa:OTHER)
FT /product="replication-associated protein 2"
FT /note="P1-RT; readthrough of stop codon"
FT /protein_id="ACX53281.1"
FT /translation="METIKRLIWPKKEIFVGEFATGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATRV
FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK
FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPNAKDRNIF
FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARTPQPTKGAFGRLSPFRKAV
FT CEKVGVAHRLGYDGFLSYYNGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK
FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREK
FT WDRFDKPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLGKLLDWQLHNRGKGYV
FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER
FT RNLKQVQKTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK
FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVEKFYSRFTLYDVPRKHQRIDTVTN
FT VHKWRGSGGSYVVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSI
FT LDSAVA"
FT CDS 142. .1032
FT /codon_start=1
FT /product="replication-associated protein 1"
FT /note="P1"
FT /protein_id="ACX53280.1"
FT /translation="METIKRLIWPKKEIFVGEFATGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATRV
FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK
FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVK"
FT CDS 2610. .3770
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACX53282.1"
FT /translation="MTMVLRNPGTMVPQGGNKTSKMAKNAFQQGLQAGAAYLMGNPKGA
FT LKKGKDAWNYMTAGGVPSGIVHSGGMKGAIMAPVAVTRQLRGSKPKFSGRTSGSVTVSH
FT RELITQVNNSTQFVVNGGVTGNLRQVNPLNGTLFTWLPSIAANFDQYTFNSVTLHYVPL
FT CATTETGRVAMYFDKDSEDLEPADRVELANYATLKETAPWAEAMLRIPTDRIKRYNDDS
FT SVNDRKLIDLGQIGIATYGGSGTNPVGDVFISYSVTLHFPQPTAAGVQTRRLDLTSVLD
FT TNVGPSYTITSSTATVYTVAFRTVGTFMLFGAVRSTGSPVIGLSSANIAINSNTTLNTA
FT GTAFSYMTNVTVSALPASITFTAVGVITSSTSYAVRASRTNNADLI"
FT CDS 3805. .4374
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ACX53283.1"
FT /translation="MDTEYEQVNKPWNELYKETTLGNKLMVNVGMEDQEVPLLPSNFLT
FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI
FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW
FT KVMYQEDALKALKPSKKKASKTDSSV"
FT CDS 3837. .4355
FT /codon_start=1
FT /product="silencing suppressor"
FT /protein_id="ACX53284.1"
FT /translation="MERAIQGNDAREQANGERWDGGSGGTTSPFKLPDESPSWTEWRLH
FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTETSLHRVLGSWTGNSVNYAASRFFG
FT VNQIGCTYSIRFRGVSVTISGGSRALQHLCEMAIRSKQELLQLTPVEVESNVSRGCPEG
FT AEAFEEESE"
XX
SQ Sequence 4612 BP; 1233 A; 942 C; 1257 G; 1180 T; 0 other;
gq259478 Length: 4612 14-OCT-2009 Type: N Check: 1361 ..
1 agttcgttta tctggtgact tgcgctaatc gttgctttgc gtagggaatt
51 tctctccacg actactatct ttagttttgg ggtttgaagg ttgggtctac
101 ctttcggggg gataaattgt aactgccaac aaataagcga catggagacc
151 atcaagagac tgatctggcc taagaaggag attttcgtag gagaattcgc
201 gaccggggtt aataggacgg caccggtgga catcttccaa ttggtgtgtc
251 gtgtggttct aagatacatg aggacaggga aaatagagtg tgattctgac
301 agcatgacta agtttatagt tgaattacta aaaactgatt gtgctgccaa
351 gtgggagtgg ttcatgaaga gacggcagag gggtgactat gttgtccctc
401 tatctatagc tgctatccca atcataccgc tactgagtta tgccactagg
451 gtacgcgcag tctcagtcaa ggcttttggc aatgagcttt cgttcaatgt
501 cagagtgcct agaccatctg tacctaagaa gggtttactc cttagactgg
551 cggcaggcct agcgttagca cctatatgcg cgctggcagt gtacgctacc
601 ctacccaggg aaaaactgtc ggtatttaag ctgaggaccg aagcacgcgc
651 acacatggag gatgagagag aagcgactga ttgtttggtg gttgagccgg
701 cacgggaact taagggtaag gatggtgagg atctcctcac tggtagtaga
751 ttaactaagg tgattgcgtc cacggggcgc cctcgcagaa ggccttatgc
801 agctaaaatt gcacaggtcg cgagagctaa ggtgggttac cttaagaata
851 gtcctgagaa tagactaatc taccagcgag tgatgattga gatcatggac
901 aaagactgcg ttaggtatgt tgacagggat gtcatattgc ctttggctat
951 tggatgctgt tttgtctatc cggacggagt ggaggagtcg gcggcactat
1001 ggggttctca ggaatccctt ggtgtcaaat agggaggcct agtacgtcta
1051 cctggggttg taacacagat caatcgagat atcccatctg atgtgttact
1101 tccccaggag gtgctagagg ttcgtacagg acctcccaat gctaaggacc
1151 gtaatatatt tatggttgca ggttgcccat cacaggcacg gttcttagta
1201 cataatcatt gcctgaaaaa ccttaaaagg ggtcttgtgg agagagtctt
1251 ctgcgtagag agaaacggga agctcgctcg cactccacaa cctaccaaag
1301 gagcttttgg acgtctttcc ccgttcagga aagcagtttg tgagaaggtt
1351 ggagttgccc accgacttgg gtatgatgga tttctgtcat actacaacgg
1401 tgcgaagctc cgtacttaca cacgagctgt ggagagtctg catatcactc
1451 ctgtctcgga gagggatagt catctgacta ccttcgtcaa ggcagagaag
1501 atatcgacgt ctaaaggtga cccagcacct agggtgattc agcctcgaaa
1551 ccctaggtac aatgtcgaac ttggaagata tctacggcat atggaatcca
1601 agctgatgaa agctgttgat ggcgtgtttg gagaaacgac gtgcatcaag
1651 ggatatacag ccgacgaggt gggtgcaatc tttcgagaga agtgggatag
1701 gtttgataaa cctgttgcca ttggtctcga tgcatccagg tttgatcaac
1751 actgttccgt ggaggctttg caattcgagc atagcttcta cagggccatg
1801 taccctggca ataagctcct gggcaagttg ttggactggc aactccataa
1851 tagagggaaa ggttatgttc ctgatggaac tataacatac cgtaaggagg
1901 ggtgccgcat gagtggggat ataaacactt cgttaggtaa ttatctattg
1951 atgtgcgcaa tggtacacgg gtacatgcgc catttgggga ttaatgagtt
2001 tagtctggca aactgtgggg atgattgtgt tcttatattg gaacgcagga
2051 atcttaagca ggtacaaaag actctaccag agtatttcct taatctagga
2101 tatactatga aggtggagcc gcctgtattt caattggaag aggttgaatt
2151 ttgccaggca caccccgtac agtttcaagg tggttggaag atggtccgca
2201 atgtccgtac cgcaatgagc aaggacgtgc actgtgttaa caatatacgc
2251 gatttggcga cgaggagagc atggagtaat gcccaacacc atggtggatt
2301 agcacttagt gctggcatac ctgtggttga gaagttttac tccaggttta
2351 cattatatga tgtacctcgc aaacatcaac gtattgacac agtcaccaac
2401 gttcataagt ggcgtggatc tggtggaagt tatgttgtga cccctgaatc
2451 tagggctagc ttttgggctg cctttggttt gacgggggat gagcaactgg
2501 ctttggagga tcgtctggat agatgggaga tggatctatt tggagaggag
2551 ggtgttgacg ctcacgagcc cagcattctc gactccgccg tagcttgacc
2601 aagcaagaca tgacaatggt actaagaaat ccaggcacaa tggtgcctca
2651 aggcggcaat aaaacgagta agatggcgaa gaatgcattt caacaagggt
2701 tacaagcagg ggctgcctat ctgatgggca accccaaggg ggcattaaag
2751 aaagggaaag acgcatggaa ttacatgaca gcagggggtg tgccaagtgg
2801 tatagtacac tcagggggaa tgaaaggcgc gataatggcg cccgtggcag
2851 ttaccagaca gttaaggggg agtaaaccta aattctccgg aagaacatct
2901 ggttccgtga cagtaagtca tagagagcta attacgcaag tgaacaactc
2951 aacgcagttt gtggttaatg gtggtgttac tggtaacctt agacaagtta
3001 atcccttgaa tgggaccttg ttcacatggt tgcctagcat tgccgctaac
3051 tttgatcagt acacatttaa tagtgttacg ttgcattacg tacctttatg
3101 tgctactacc gagactgggc gagttgcaat gtattttgac aaagattccg
3151 aggaccttga gcccgcggac agagtagagc ttgctaatta cgctacattg
3201 aaagaaactg caccatgggc cgaggctatg ttacgtatac ctactgatcg
3251 catcaaacgg tataatgatg acagcagcgt aaatgatcgc aaattgattg
3301 acctgggaca aataggtatt gcaacatatg gtggttcggg cacaaaccct
3351 gtcggggatg tgttcatatc ttacagtgtt actctacact tcccacaacc
3401 cactgcagcc ggtgtgcaga cacggcgtct tgatctcaca agtgttttag
3451 acacaaatgt cggacctagc tacactatca catccagcac ggccacggtg
3501 tacacagttg cttttcgcac tgtgggtact tttatgctgt ttggagctgt
3551 gaggtctact gggtcacccg ttatcggact gtccagtgca aatattgcta
3601 ttaatagcaa caccacgttg aacacagccg gtactgcttt ctcctacatg
3651 acgaacgtga cggtgtcggc tttgccagca tccatcacgt tcactgcggt
3701 tggagtgatt acttcgtcaa cttcatatgc cgtgagagca tcccgtacta
3751 ataacgcaga cctgatatag taccattgag gggcctcttg aacaagacca
3801 gttcatggat actgaatacg aacaagtcaa taaaccatgg aacgagctat
3851 acaaggaaac gacgctaggg aacaagctaa tggtgaacgt tgggatggag
3901 gatcaggagg taccacttct cccttcaaac ttcctgacga aagtccgagt
3951 tggactgagt ggcggctaca taacgatgag acgaattcga atcaagataa
4001 tccccttggt ttcaaggaaa gctggggttt cgggaaagtt gtatttaaga
4051 gatatctcag atacgacagg acggaaactt cattgcacag agtccttgga
4101 tcttggacgg gaaattcggt taactatgca gcatctcgat ttttcggtgt
4151 caaccagatc ggatgtacct atagtattcg gtttcgagga gttagtgtca
4201 ccatttctgg agggtcgaga gctcttcagc atctctgtga gatggcaatt
4251 cggtctaagc aagaactgtt acagcttacc ccagtcgaag tggaaagtaa
4301 tgtatcaaga ggatgccctg aaggcgctga agccttcgaa gaagaaagcg
4351 agtaagacag actcttcagt ctgagtttgc ggaaatgagt gtaaatctgg
4401 catagcatac aggttactct tgttgggttc tagatgttat gatgacgagt
4451 cggacggact ccgcactagg tttggtcgcc taggggatgg aggtatggaa
4501 agggtctcgt gtgctgttag tcggtcgaaa gacgcgcttg caacatgggc
4551 ctatatccgg ataagtcata gcaatactag ccaacatgaa ttggttagat
4601 tcaagaagcc ca