Sequence of DPV Carnation Italian ringspot virus
Carnation Italian ringspot virus isolate OE11 replication-associated protein 2, replication-associated protein 1, coat protein, movement protein, and silencing suppressor genes, complete cds.
ACC No: GQ259478
Dated: 2009-10-14 | Length: 4612 | CRC: 321196018
ID GQ259478; SV 1; linear; genomic RNA; STD; VRL; 4612 BP. XX AC GQ259478; XX DT 14-OCT-2009 (Rel. 102, Created) DT 14-OCT-2009 (Rel. 102, Last updated, Version 1) XX DE Carnation Italian ringspot virus isolate OE11 replication-associated DE protein 2, replication-associated protein 1, coat protein, movement DE protein, and silencing suppressor genes, complete cds. XX KW . XX OS Carnation Italian ringspot virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Tombusvirus. XX RN [1] RP 1-4612 RX PUBMED; 19768632. RA Koenig R., Lesemann D.E., Pfeilstetter E.; RT "New isolates of carnation Italian ringspot virus differ from the original RT one by having replication-associated proteins with a typical RT tombusvirus-like N-terminus and by inducing peroxisome- rather than RT mitochondrion-derived multivesicular bodies"; RL Arch. Virol. 154(10):1695-1698(2009). XX RN [2] RP 1-4612 RA Koenig R.; RT ; RL Submitted (11-JUN-2009) to the EMBL/GenBank/DDBJ databases. RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut, RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig RL D38104, Germany XX FH Key Location/Qualifiers FH FT source 1. .4612 FT /organism="Carnation Italian ringspot virus" FT /host="cherry tree" FT /isolate="OE11" FT /mol_type="genomic RNA" FT /db_xref="taxon:39443" FT CDS 142. .2598 FT /codon_start=1 FT /transl_except=(pos:1030. .1032,aa:OTHER) FT /product="replication-associated protein 2" FT /note="P1-RT; readthrough of stop codon" FT /protein_id="ACX53281.1" FT /translation="METIKRLIWPKKEIFVGEFATGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATRV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARTPQPTKGAFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYNGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREK FT WDRFDKPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLGKLLDWQLHNRGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER FT RNLKQVQKTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVEKFYSRFTLYDVPRKHQRIDTVTN FT VHKWRGSGGSYVVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSI FT LDSAVA" FT CDS 142. .1032 FT /codon_start=1 FT /product="replication-associated protein 1" FT /note="P1" FT /protein_id="ACX53280.1" FT /translation="METIKRLIWPKKEIFVGEFATGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATRV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVK" FT CDS 2610. .3770 FT /codon_start=1 FT /product="coat protein" FT /protein_id="ACX53282.1" FT /translation="MTMVLRNPGTMVPQGGNKTSKMAKNAFQQGLQAGAAYLMGNPKGA FT LKKGKDAWNYMTAGGVPSGIVHSGGMKGAIMAPVAVTRQLRGSKPKFSGRTSGSVTVSH FT RELITQVNNSTQFVVNGGVTGNLRQVNPLNGTLFTWLPSIAANFDQYTFNSVTLHYVPL FT CATTETGRVAMYFDKDSEDLEPADRVELANYATLKETAPWAEAMLRIPTDRIKRYNDDS FT SVNDRKLIDLGQIGIATYGGSGTNPVGDVFISYSVTLHFPQPTAAGVQTRRLDLTSVLD FT TNVGPSYTITSSTATVYTVAFRTVGTFMLFGAVRSTGSPVIGLSSANIAINSNTTLNTA FT GTAFSYMTNVTVSALPASITFTAVGVITSSTSYAVRASRTNNADLI" FT CDS 3805. .4374 FT /codon_start=1 FT /product="movement protein" FT /protein_id="ACX53283.1" FT /translation="MDTEYEQVNKPWNELYKETTLGNKLMVNVGMEDQEVPLLPSNFLT FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW FT KVMYQEDALKALKPSKKKASKTDSSV" FT CDS 3837. .4355 FT /codon_start=1 FT /product="silencing suppressor" FT /protein_id="ACX53284.1" FT /translation="MERAIQGNDAREQANGERWDGGSGGTTSPFKLPDESPSWTEWRLH FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTETSLHRVLGSWTGNSVNYAASRFFG FT VNQIGCTYSIRFRGVSVTISGGSRALQHLCEMAIRSKQELLQLTPVEVESNVSRGCPEG FT AEAFEEESE" XX SQ Sequence 4612 BP; 1233 A; 942 C; 1257 G; 1180 T; 0 other; gq259478 Length: 4612 14-OCT-2009 Type: N Check: 1361 .. 1 agttcgttta tctggtgact tgcgctaatc gttgctttgc gtagggaatt 51 tctctccacg actactatct ttagttttgg ggtttgaagg ttgggtctac 101 ctttcggggg gataaattgt aactgccaac aaataagcga catggagacc 151 atcaagagac tgatctggcc taagaaggag attttcgtag gagaattcgc 201 gaccggggtt aataggacgg caccggtgga catcttccaa ttggtgtgtc 251 gtgtggttct aagatacatg aggacaggga aaatagagtg tgattctgac 301 agcatgacta agtttatagt tgaattacta aaaactgatt gtgctgccaa 351 gtgggagtgg ttcatgaaga gacggcagag gggtgactat gttgtccctc 401 tatctatagc tgctatccca atcataccgc tactgagtta tgccactagg 451 gtacgcgcag tctcagtcaa ggcttttggc aatgagcttt cgttcaatgt 501 cagagtgcct agaccatctg tacctaagaa gggtttactc cttagactgg 551 cggcaggcct agcgttagca cctatatgcg cgctggcagt gtacgctacc 601 ctacccaggg aaaaactgtc ggtatttaag ctgaggaccg aagcacgcgc 651 acacatggag gatgagagag aagcgactga ttgtttggtg gttgagccgg 701 cacgggaact taagggtaag gatggtgagg atctcctcac tggtagtaga 751 ttaactaagg tgattgcgtc cacggggcgc cctcgcagaa ggccttatgc 801 agctaaaatt gcacaggtcg cgagagctaa ggtgggttac cttaagaata 851 gtcctgagaa tagactaatc taccagcgag tgatgattga gatcatggac 901 aaagactgcg ttaggtatgt tgacagggat gtcatattgc ctttggctat 951 tggatgctgt tttgtctatc cggacggagt ggaggagtcg gcggcactat 1001 ggggttctca ggaatccctt ggtgtcaaat agggaggcct agtacgtcta 1051 cctggggttg taacacagat caatcgagat atcccatctg atgtgttact 1101 tccccaggag gtgctagagg ttcgtacagg acctcccaat gctaaggacc 1151 gtaatatatt tatggttgca ggttgcccat cacaggcacg gttcttagta 1201 cataatcatt gcctgaaaaa ccttaaaagg ggtcttgtgg agagagtctt 1251 ctgcgtagag agaaacggga agctcgctcg cactccacaa cctaccaaag 1301 gagcttttgg acgtctttcc ccgttcagga aagcagtttg tgagaaggtt 1351 ggagttgccc accgacttgg gtatgatgga tttctgtcat actacaacgg 1401 tgcgaagctc cgtacttaca cacgagctgt ggagagtctg catatcactc 1451 ctgtctcgga gagggatagt catctgacta ccttcgtcaa ggcagagaag 1501 atatcgacgt ctaaaggtga cccagcacct agggtgattc agcctcgaaa 1551 ccctaggtac aatgtcgaac ttggaagata tctacggcat atggaatcca 1601 agctgatgaa agctgttgat ggcgtgtttg gagaaacgac gtgcatcaag 1651 ggatatacag ccgacgaggt gggtgcaatc tttcgagaga agtgggatag 1701 gtttgataaa cctgttgcca ttggtctcga tgcatccagg tttgatcaac 1751 actgttccgt ggaggctttg caattcgagc atagcttcta cagggccatg 1801 taccctggca ataagctcct gggcaagttg ttggactggc aactccataa 1851 tagagggaaa ggttatgttc ctgatggaac tataacatac cgtaaggagg 1901 ggtgccgcat gagtggggat ataaacactt cgttaggtaa ttatctattg 1951 atgtgcgcaa tggtacacgg gtacatgcgc catttgggga ttaatgagtt 2001 tagtctggca aactgtgggg atgattgtgt tcttatattg gaacgcagga 2051 atcttaagca ggtacaaaag actctaccag agtatttcct taatctagga 2101 tatactatga aggtggagcc gcctgtattt caattggaag aggttgaatt 2151 ttgccaggca caccccgtac agtttcaagg tggttggaag atggtccgca 2201 atgtccgtac cgcaatgagc aaggacgtgc actgtgttaa caatatacgc 2251 gatttggcga cgaggagagc atggagtaat gcccaacacc atggtggatt 2301 agcacttagt gctggcatac ctgtggttga gaagttttac tccaggttta 2351 cattatatga tgtacctcgc aaacatcaac gtattgacac agtcaccaac 2401 gttcataagt ggcgtggatc tggtggaagt tatgttgtga cccctgaatc 2451 tagggctagc ttttgggctg cctttggttt gacgggggat gagcaactgg 2501 ctttggagga tcgtctggat agatgggaga tggatctatt tggagaggag 2551 ggtgttgacg ctcacgagcc cagcattctc gactccgccg tagcttgacc 2601 aagcaagaca tgacaatggt actaagaaat ccaggcacaa tggtgcctca 2651 aggcggcaat aaaacgagta agatggcgaa gaatgcattt caacaagggt 2701 tacaagcagg ggctgcctat ctgatgggca accccaaggg ggcattaaag 2751 aaagggaaag acgcatggaa ttacatgaca gcagggggtg tgccaagtgg 2801 tatagtacac tcagggggaa tgaaaggcgc gataatggcg cccgtggcag 2851 ttaccagaca gttaaggggg agtaaaccta aattctccgg aagaacatct 2901 ggttccgtga cagtaagtca tagagagcta attacgcaag tgaacaactc 2951 aacgcagttt gtggttaatg gtggtgttac tggtaacctt agacaagtta 3001 atcccttgaa tgggaccttg ttcacatggt tgcctagcat tgccgctaac 3051 tttgatcagt acacatttaa tagtgttacg ttgcattacg tacctttatg 3101 tgctactacc gagactgggc gagttgcaat gtattttgac aaagattccg 3151 aggaccttga gcccgcggac agagtagagc ttgctaatta cgctacattg 3201 aaagaaactg caccatgggc cgaggctatg ttacgtatac ctactgatcg 3251 catcaaacgg tataatgatg acagcagcgt aaatgatcgc aaattgattg 3301 acctgggaca aataggtatt gcaacatatg gtggttcggg cacaaaccct 3351 gtcggggatg tgttcatatc ttacagtgtt actctacact tcccacaacc 3401 cactgcagcc ggtgtgcaga cacggcgtct tgatctcaca agtgttttag 3451 acacaaatgt cggacctagc tacactatca catccagcac ggccacggtg 3501 tacacagttg cttttcgcac tgtgggtact tttatgctgt ttggagctgt 3551 gaggtctact gggtcacccg ttatcggact gtccagtgca aatattgcta 3601 ttaatagcaa caccacgttg aacacagccg gtactgcttt ctcctacatg 3651 acgaacgtga cggtgtcggc tttgccagca tccatcacgt tcactgcggt 3701 tggagtgatt acttcgtcaa cttcatatgc cgtgagagca tcccgtacta 3751 ataacgcaga cctgatatag taccattgag gggcctcttg aacaagacca 3801 gttcatggat actgaatacg aacaagtcaa taaaccatgg aacgagctat 3851 acaaggaaac gacgctaggg aacaagctaa tggtgaacgt tgggatggag 3901 gatcaggagg taccacttct cccttcaaac ttcctgacga aagtccgagt 3951 tggactgagt ggcggctaca taacgatgag acgaattcga atcaagataa 4001 tccccttggt ttcaaggaaa gctggggttt cgggaaagtt gtatttaaga 4051 gatatctcag atacgacagg acggaaactt cattgcacag agtccttgga 4101 tcttggacgg gaaattcggt taactatgca gcatctcgat ttttcggtgt 4151 caaccagatc ggatgtacct atagtattcg gtttcgagga gttagtgtca 4201 ccatttctgg agggtcgaga gctcttcagc atctctgtga gatggcaatt 4251 cggtctaagc aagaactgtt acagcttacc ccagtcgaag tggaaagtaa 4301 tgtatcaaga ggatgccctg aaggcgctga agccttcgaa gaagaaagcg 4351 agtaagacag actcttcagt ctgagtttgc ggaaatgagt gtaaatctgg 4401 catagcatac aggttactct tgttgggttc tagatgttat gatgacgagt 4451 cggacggact ccgcactagg tttggtcgcc taggggatgg aggtatggaa 4501 agggtctcgt gtgctgttag tcggtcgaaa gacgcgcttg caacatgggc 4551 ctatatccgg ataagtcata gcaatactag ccaacatgaa ttggttagat 4601 tcaagaagcc ca