Sequence of DPV Tomato leaf curl Hainan virus

Tomato leaf curl Vietnam virus isolate Hung Yen segment DNA A, complete sequence.

ACC No: GQ338766

Dated: 2009-07-29 | Length: 2743 | CRC: -1513171453

                
ID   GQ338766; SV 1; circular; genomic DNA; STD; VRL; 2743 BP.
XX
AC   GQ338766;
XX
DT   29-JUL-2009 (Rel. 101, Created)
DT   29-JUL-2009 (Rel. 101, Last updated, Version 1)
XX
DE   Tomato leaf curl Vietnam virus isolate Hung Yen segment DNA A, complete
DE   sequence.
XX
KW   .
XX
OS   Tomato leaf curl Vietnam virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2743
RA   Thanh T.N., Vinh D.N., Mukheerjee S.M.;
RT   ;
RL   Submitted (29-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL   Plant Molecular Biology, International Centre For Genetic Engineering and
RL   Biotechnology, Aruna Asaf Ali Marg, New Delhi, Delhi 110067, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2743
FT                   /organism="Tomato leaf curl Vietnam virus"
FT                   /segment="DNA A"
FT                   /host="tomato"
FT                   /isolate="Hung Yen"
FT                   /mol_type="genomic DNA"
FT                   /country="Viet Nam:Khoai Chau, Hung Yen"
FT                   /collection_date="12-Jan-2008"
FT                   /db_xref="taxon:208177"
FT   gene            132. .482
FT                   /gene="AV2"
FT   CDS             132. .482
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="pre-coat protein"
FT                   /protein_id="ACT79065.1"
FT                   /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLLRDL
FT                   ISVIRAKDYVEASRRYSHFHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGESAHV
FT                   PKAQDVQNVQKP"
FT   gene            292. .1065
FT                   /gene="AV1"
FT   CDS             292. .1065
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /protein_id="ACT79066.1"
FT                   /translation="MSKRPADIVISTPASKVRRRLNFDSPYASRAAAPTVLVTNKRRSW
FT                   VNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRHDVVHVGKVICVSDVTRGNGLTH
FT                   RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE
FT                   PSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNIHVTYNHQEAAKYDN
FT                   PPENALLLYMACTHASHLVYATLKIRIYFYDSVQN"
FT   gene            complement(1062. .1466)
FT                   /gene="AC3"
FT   CDS             complement(1062. .1466)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /protein_id="ACT79067.1"
FT                   /translation="MDSRTGEAITATQAESGVYIWTVKNPLYFKIISHDERPFLMNNDI
FT                   ITIQVQFNYNLRKALGIHQCFLIFQIWTRLRPQTWRFLRVFRVQCMKYLDNLGVISINN
FT                   VIRACDHVLWDVLEKTEFVTLPNIIKFILY"
FT   gene            complement(1207. .1611)
FT                   /gene="AC2"
FT   CDS             complement(1207. .1611)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcription activator protein"
FT                   /note="suppressor"
FT                   /protein_id="ACT79068.1"
FT                   /translation="MRSSSPSKAHSTQVPIKVQHRNAKKATRRRRVDLPCGCSYFIALG
FT                   CHNHGFSHRGSYHCNSSREWRIYLDGQKSPIFQDNQPRRETISDEQRHHHNTSPIQLQP
FT                   EESVGNTPMFSNLPDLDSFTSSDLAFLKSI"
FT   gene            complement(1514. .2599)
FT                   /gene="AC1"
FT   CDS             complement(1514. .2599)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="Rep protein"
FT                   /protein_id="ACT79069.1"
FT                   /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQLKNLETPVNKLFIR
FT                   ICREFHEDGTPHLHVLIQFEGKFQCKNQRFFDLISPSRSAHFHPNIQAAKSSTDVKSYM
FT                   DKDGDVLDHGLFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDYVLQFH
FT                   NLNNNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSAAARPLRPISIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALKIWAIKNAIFVTLQGAL
FT                   YSGSYQSATPQRQESNEETES"
FT   gene            complement(2149. .2442)
FT                   /gene="AC4"
FT   CDS             complement(2149. .2442)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /protein_id="ACT79070.1"
FT                   /translation="MELLTCMFSSNSKGNSNVKTKDSSISYPQAGQHISIRTFRQLKAQ
FT                   QMSSPIWTKTETCLIMDFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY"
XX
SQ   Sequence 2743 BP; 742 A; 542 C; 608 G; 851 T; 0 other;

gq338766 Length: 2743  29-JUL-2009  Type: N  Check: 8681  ..

       1  accggatggc cgcgattttt tttacatggt ccccaccact aacaaatgtc
      51  ctccacttag aacgctccct caaagcctat ttaattcaaa tccattatat
     101  atacttggtc cccaagtact cactttaaaa tatgtgggat cctttactga
     151  atgagtttcc cgaaaccgta cacggtttta ggtgtatgtt agcgattaaa
     201  tatttgcaat tagtagaaaa tacatactct cctgatacat tagggtacga
     251  tttgcttcgt gatttaattt cagttattcg tgctaaggac tatgtcgaag
     301  cgtcccgcag atatagtcat ttccactccc gcatccaagg tgcgtcgccg
     351  gctgaatttc gacagcccgt atgccagccg tgctgctgcc cccactgtcc
     401  tcgtcacaaa caaaaggagg tcatgggtga atcggcccat gtaccgaaag
     451  cccaggatgt acagaatgta caaaagccct gatgttcctc gaggatgtga
     501  aggcccatgt aaggttcagt cctatgaaca gcgtcatgat gtagtgcacg
     551  taggtaaagt catttgtgtg tcggatgtta ctcgtggtaa cgggttgact
     601  catcgagtgg gaaagaggtt ttgtgttaag tctgtttatg ttttgggcaa
     651  gatatggatg gatgagaaca ttaagaccaa gaatcatact aatactgtga
     701  tgtttttttt agtgcgtgat aggagaccat ttgggactcc acaggatttt
     751  ggtcaggtgt ttaacatgta tgataacgag ccaagtacag ccacggtgaa
     801  gaacgacaac agagatcgct ttcaagttct acggcgtttt caggctactg
     851  ttactggtgg tcagtatgca agtaaggagc aagcaatagt taggaagttt
     901  atgaaggtga acatccatgt gacgtataat catcaagaag ctgcgaagta
     951  tgacaatcca ccagagaatg ctcttttgtt gtatatggca tgtacccatg
    1001  ctagtcatct ggtgtatgct acattgaaaa tcagaatcta tttctatgat
    1051  tctgttcaga attaataaag gatgaatttt attatatttg gaagtgttac
    1101  aaattctgtt ttttccaata catcccataa tacatgatca catgctctaa
    1151  ttacattgtt aatactaatt acacccaaat tatctaaata tttcatacat
    1201  tgaaccctaa atactcttaa gaaacgccaa gtctgaggac gtaaacgagt
    1251  ccagatctgg aagattagaa aacattggtg tattcccaac gctttcctca
    1301  ggttgtaatt gaattggact tgtattgtga tgatgtcgtt gttcatcaga
    1351  aatggtctct cgtcgtggct gattatcttg aaatataggg gatttttgac
    1401  cgtccagata tatacgccac tctctgcttg agttgcagtg atagcttccc
    1451  ctgtgcgaga atccatgatt gtgacagcct agtgcaatga agtatgaaca
    1501  gccacaaggg agatcaactc tccgtctcct cgttgctttc ttggcgttgc
    1551  ggtgttgcac tttgatagga acctgagtag agtgcgcctt ggagggtgac
    1601  gaagatcgca ttttttattg cccagatttt aagtgcgctg ttcttatctt
    1651  cgtccaagaa ttctttatag cttgaattgg ggccgggatt gcagaggaag
    1701  atagtgggaa ttcccccttt aatttgaacg ggttttccgt actttgtgtt
    1751  gctttgccag tccctttggg cccccatgaa ttctttaaaa tgctttaggt
    1801  agtgcggatc gacgtcatca atgacgttgt accaggcatc attattgtat
    1851  accttcggac ttaaatcaag atgaccacac aaataattat gtggtcctaa
    1901  tgacctagcc cacatcgtct ttcccgtccg actatcgcct tcgataacta
    1951  tacttatcgg tcttaaaggc cgcgcagcgg cactgacaac gttctctgca
    2001  gcccactctt cgagttcctc tggaactcga tcaaaggaag aagaagaaaa
    2051  aggcgaaaca taaacctcca ttggaggagt aaaaatccta tctaaattat
    2101  tatttaaatt atgaaactgt aaaacataat ctttaggtgc cttttccctt
    2151  agtatattga gggccgaagc tttggaccct gaattgattg cctcggcata
    2201  tgcgtcgttg gcagattggc aacctcctct agccgatctt ccatcgatct
    2251  ggaaaagtcc atgatcaagc acgtctccgt ctttgtccat ataggacttg
    2301  acatctgttg agcttttagc tgcctgaatg ttcggatgga aatgtgctga
    2351  cctgcttggg gatatgagat cgaagaatct ttggttttta cattggaatt
    2401  tcccttcgaa ttggatgaga acatgcaggt gaggagttcc atcttcgtgg
    2451  aattctctgc agatgcggat aaatagttta tttactgggg tttctaggtt
    2501  tttaagttgg gaaagtgctt cttctttagt gagagagcag tgtggatatg
    2551  tgaggaaata atttttggca tttattctga atttattagg aggagccatt
    2601  gactggtcaa tcggtgtctc ataaacttgg ctatgcaatt ggtgtctggt
    2651  gtcttattta tatgtggaca ccaaatggca ttatcgtaat tcccaaaaga
    2701  aattcaaaat tcaaattggt aaagcggcca tccgtataat att