Sequence of DPV Drosophila melanogaster totivirus
Drosophila melanogaster totivirus SW-2009a strain DTV, complete genome.
ACC No: GQ342961
Dated: 2010-02-05 | Length: 6780 | CRC: 45996471
ID GQ342961; SV 1; linear; genomic RNA; STD; VRL; 6780 BP.
XX
AC GQ342961;
XX
DT 09-NOV-2009 (Rel. 102, Created)
DT 05-FEB-2010 (Rel. 103, Last updated, Version 2)
XX
DE Drosophila melanogaster totivirus SW-2009a strain DTV, complete genome.
XX
KW .
XX
OS Drosophila melanogaster totivirus SW-2009a
OC Viruses; dsRNA viruses; Totiviridae.
XX
RN [1]
RP 1-6780
RX PUBMED; 20080648.
RA Wu Q., Luo Y., Lu R., Lau N., Lai E.C., Li W.X., Ding S.W.;
RT "Virus discovery by deep sequencing and assembly of virus-derived small
RT silencing RNAs";
RL Proc. Natl. Acad. Sci. U.S.A. 107(4):1606-1611(2010).
XX
RN [2]
RP 1-6780
RA Wu Q., Ding S.-W.;
RT ;
RL Submitted (29-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology & Microbiology, UC Riverside, 900 University Ave,
RL Riverside, CA 92521, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6780
FT /organism="Drosophila melanogaster totivirus SW-2009a"
FT /host="Drosophila melanogaster"
FT /lab_host="S2 cells"
FT /strain="DTV"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="Feb-2009"
FT /db_xref="taxon:663282"
FT CDS 474. .4235
FT /codon_start=1
FT /product="structural protein"
FT /protein_id="ACU32788.1"
FT /translation="MKQETRVPQSHIEYPDIEMHLISENKQQQPSAPMPHEPRAAGQAL
FT KDLNLAYLNNDQKTTLSAWVRGLTVEGVKPNPGPSIIEPNHGPSDELTQAEIQILQRQL
FT AKQDQKPALIMKDQENLLDDLTELKTTVQPQIDNSGFLAHVDHAAEFSGTKGEYFAVMK
FT YILTNSHSNRFACLANLTDIPDEPVEAFVPMSFSRPKKEKKEKDNHMEEKKKKEKRESM
FT AMPASQKPKLKTDEEKEIERKNVIRRIVEQFRDKKMYKLVLWLDKPMSRKFKTEVLDEL
FT WGSGWQERNKMNQYEWLSYCWANNVTKVDTQTVLLSYDIKWQQLPADMKMAILGDSRAD
FT LEAQKTHNKVMHAYNGNPLCQGFQEVEASKTFLNIAEESNSVLKPYTGLEAEKYITNIV
FT GDANPNQSRIFDQDRLRGNQYNANGAVVHNAVSTIPFTNLIPRTIRSDDDVLEKSANRL
FT QVTETNVTDYYVNPIEPTELSKTISDQIKNNQSSNWRRDNTSLAGFNSFDIATVNTALI
FT ARGLSTESMTLKLELLHGIMAMQVEAPMINSSTYSIVDNHTIPTVTDRAVIGINDSPVF
FT GEDCGGDLPEYPFGGGTGTIAFHLTLQTVPEERRDKAIFCPPGLLQAARDGAEALALFV
FT LSMSEWPFGIYTVTKRTTDEKGLNPADQVYVPMETITRVGGDRVLDVVLPRRYAVANPT
FT TQGNANALAVIQPQAGPLANGADGLAAGELLDVNFIGADGITEYPLTYYLYTWALRFDI
FT TTIRQYIGRMAALIGVKHQLWASHEIRVALCQVAPKMVVGVTGSGDLPRGSAAASEVCY
FT SSLLEVSRSEEDFPLLGQVQADFRVFETNTSTWNKVVLGLATAPNVTSEQNMHVPFVVG
FT DPRSNAWDRLEAVPIAAAWQMYYHSRGVTTAAWNDAYTNVNNVWLQKMARDSFSTTQST
FT GTILPARYGKIVKNLMRNMFEREPAKVVTSVGGDEYEITHFERWLPGNRYASVFEQDET
FT EVNLFPPTLLPDIWVQYPATHTPIMCASFPPVFGQDSTQGFGKESQLIPFRNANNNLVA
FT PYVEAFVANQAYFPIGSGPNINDKVLWNSRLWMTSGFVQYLDYAGNAINEVVPAAGLPL
FT GRSIPLLPGEVQPVGNTNMSTSCVPRYSVDGRRIFTYVNTAQSVPLIQACNRANRLARS
FT AWLLLHVYIEPELQLLSDEVVDIFDQLTSKTFLDVAKSAADSAEGNIPATKVLTDLQAV
FT DSATLPSTLDPSTSMLQPAPLLGEPTTN"
FT CDS 4841. .6706
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="RDRP"
FT /protein_id="ACU32789.1"
FT /translation="MTHQEHKKYISFEKYVKEGYWITSGSSSIGKVNWSYDGDLGKFKA
FT RKNMLLDLYTPDEIYKMAVEWDGKLENRVFIKDELAKRRLAVASNIEAYLNQGYIFYLF
FT GHGFKNWKYITLDETPGETHLRNCETIKALKDGCFALPFDFKGFDRQPTIWEVKQITKR
FT VIDQIKYLVPPQDRHLFTKIAAKNISCYDNNYLYSPLTKETKKQTNGIPSGIRPTSFIG
FT NVWNMITTDIARDQTSLILGKDNIRLIALKGDDTKILAKDFMTCLVFRYSYQAINAVGE
FT NSKFGIMQNCCEFLRTEISTQGVRGWTNRAIPSVTQRKPWNPQPWTANQQVETTANNIY
FT LLERRSKKQLDWLHQANKIKWSKYTGQSYHWLHLPKRLGGFGIYEWKGWKTTSKLPLAD
FT IPTFDVPGLFSENINLTWKQMTDEEKTAYQQVEFSMKIAADDIPGPQKHISSNYIKNLR
FT KLKPVWEKTVVPTYRFYKTEGPTCENNIWPRRMIQSHEAGPNGMPIFSEFIRQHQIAKK
FT AKIEIPSLKECLAKWYPEAYKTMTEYERKGWHRTDAINIATGKVPLEPTGILNPILTPW
FT ISKIVVKSGFSFWRGRENIALHLTSVCKQAVQYIQNEGGNYMYAF"
XX
SQ Sequence 6780 BP; 2259 A; 1326 C; 1545 G; 1650 T; 0 other;
gq342961 Length: 6780 05-FEB-2010 Type: N Check: 8554 ..
1 gcgatattag agaagatcct actctaatat catacggatt ccatggatca
51 gacgagaaag acccacacag ctgatgagaa tgactgaaag gaaaaaacaa
101 gaggatacag gtgcttcgct ttgttcgtga gacggcaaag atttgaacct
151 ttttagaaac aatttaaata tgctgaacaa ctatcacaat aactttaaca
201 gtcctagcct ggctatgatg gacgatgaca aagcttgtgt tgatgatggt
251 tgtaagctaa caaagtggtg atgagttggt gataccctca ctttggtatt
301 taattgtaga caagatggaa cattagcatc cgaggtcact acgttccgga
351 aagaaactca aatacaacag gaactgatgg gagaatatct gacgaaaaat
401 ggaaaacggg acaggattga caaaatgaaa ggattttgac agctcggaac
451 agacggcaaa atggaacaaa agtatgaaac aagaaacacg tgttcctcag
501 tctcacattg aatatccaga tatcgagatg cacctcatat ctgagaataa
551 acaacaacaa ccaagtgcac cgatgccaca cgagccaagg gcagcaggtc
601 aggcacttaa ggatttgaat ttggcttatt tgaataacga ccaaaaaaca
651 acattgtcgg catgggtacg aggcctaaca gtagaaggtg tcaaaccaaa
701 tcccggacca tcaataattg agccaaatca tggaccaagc gatgagttga
751 ctcaagccga gattcagatt ctccaacgac agctggcaaa acaagaccaa
801 aaaccagctc tgattatgaa agaccaggag aatctactgg acgatctgac
851 cgaattaaag actacggtac aaccacagat tgacaattcg ggattcttgg
901 ctcatgttga tcatgcagct gaattctcgg gaactaaggg tgaatatttc
951 gccgtgatga aatacattct cacgaattct cactccaata ggttcgcctg
1001 tttagcgaat cttactgata tacccgacga gccagtagag gcctttgtgc
1051 ctatgagctt ttccagacca aaaaaagaga aaaaagaaaa agataaccac
1101 atggaagaga agaagaaaaa agaaaaacga gaatcgatgg caatgccagc
1151 cagtcagaag ccgaaactta aaaccgacga agaaaaggaa attgaaagga
1201 aaaacgtcat caggagaatt gtggaacaat tcagggacaa gaagatgtac
1251 aagcttgtac tatggttaga caaaccaatg agcagaaaat ttaagacaga
1301 agtactcgat gagctttggg gaagtggttg gcaggaacga aataagatga
1351 accagtatga atggttgtct tactgctggg caaataatgt cactaaggtc
1401 gatactcaaa ccgtgcttct atcttatgac atcaaatggc aacaactacc
1451 tgctgatatg aaaatggcta ttctcggcga ttcgcgagct gatcttgaag
1501 ctcaaaaaac tcacaataaa gtgatgcatg cgtacaacgg taaccctttg
1551 tgtcagggat ttcaagaagt tgaagcttca aaaaccttcc tcaacatcgc
1601 ggaagagagt aattcagttc tgaaaccata tactggactg gaagctgaga
1651 aatacatcac caacattgta ggagacgcga atccgaatca atcaaggatc
1701 ttcgatcagg acaggcttag aggtaaccaa tacaatgcca atggggctgt
1751 ggttcataat gctgtatcaa ctattccgtt tacaaacctc attcctagga
1801 cgattcgatc tgatgatgac gtccttgaga agtcggccaa cagattacag
1851 gttacagaga caaacgttac ggattactac gttaatccga ttgagccaac
1901 tgaattatcc aaaacaataa gtgaccagat caaaaacaat caatcatcta
1951 actggcgacg agataacacg tcattggctg gtttcaatag tttcgacatt
2001 gcgacagtca acactgcact aattgcaaga ggtctaagca ccgaatcaat
2051 gactctcaag ttagagctat tgcacggaat aatggctatg caggttgaag
2101 caccaatgat caattccagc acttattcga tcgtagataa tcatacaatc
2151 ccgaccgtaa ctgacagggc cgtcataggc atcaatgact cgcctgtgtt
2201 tggcgaggac tgtggtggtg atcttcctga atatcctttc ggcggcggaa
2251 ccggtacaat tgcctttcac ctaacattgc aaactgttcc tgaagagagg
2301 agagataagg caatcttctg ccctcctggt ttgttgcaag cagcccgaga
2351 tggagcagag gcattggccc tatttgtttt gtcgatgtct gaatggcctt
2401 tcggtattta tactgtcacc aagagaacaa ccgatgagaa gggactgaat
2451 cctgcggatc aggtttacgt gccgatggag accataaccc gtgtaggtgg
2501 agatagagta ttggacgttg tacttcctcg aaggtatgcg gttgcaaatc
2551 caacgactca aggaaatgct aatgctctag cagttataca gcctcaagct
2601 gggcctttag ctaacggtgc ggacggatta gccgctggtg aattattgga
2651 tgtcaatttc atcggcgccg acggcattac tgaatatcca ttgacatatt
2701 acttgtatac ctgggcactt cgatttgata taacgacgat taggcaatac
2751 attggtagaa tggcagcgtt aattggagtg aaacaccaac tatgggctag
2801 tcatgaaatc agagtagctt tgtgtcaagt tgcacccaaa atggtggtcg
2851 gagttacagg ttcgggagac ctgccaagag gatcagccgc tgcaagcgag
2901 gtatgttact caagcttatt ggaggtctca cgctctgaag aagattttcc
2951 gctgcttggt caggttcaag ccgatttcag agtctttgaa accaatacaa
3001 gcacatggaa taaagtagtt ttgggattgg caacagcacc aaacgtgaca
3051 agtgaacaaa acatgcatgt accattcgtt gttggcgatc cgagatctaa
3101 cgcgtgggac cgactcgaag cagtaccaat tgctgctgct tggcagatgt
3151 actaccattc aaggggcgta actactgccg cttggaatga tgcgtacact
3201 aacgtaaata acgtttggtt gcaaaagatg gcccgtgata gcttctcaac
3251 gacccaaagc actgggacga tactgcctgc cagatatggt aagatagtca
3301 aaaacctgat gagaaacatg tttgaaagag aacctgccaa agtagtaaca
3351 agcgtgggag gcgatgaata tgagataacc cattttgagc gctggttacc
3401 gggtaataga tatgcttccg tgtttgaaca agatgaaact gaagttaatc
3451 tgtttcctcc aactttatta ccggatattt gggttcaata tccagcgact
3501 cacaccccaa tcatgtgtgc ttcgttccca cccgttttcg gccaagactc
3551 aacacaaggg ttcggcaaag aatcacaact tatacccttt cgaaacgcaa
3601 acaacaatct tgtagcacca tacgttgaag ctttcgttgc caatcaagct
3651 tatttcccga taggatcggg cccaaacatc aacgacaagg ttctgtggaa
3701 tagtagattg tggatgacaa gtggtttcgt tcagtacttg gattacgctg
3751 gcaacgcaat caacgaagtg gttcctgcag cagggctacc tttgggtagg
3801 tcaatcccat tactgccagg ggaagttcag ccggttggta acaccaacat
3851 gagcacaagc tgcgttcctc gttattctgt ggacggtcgc cgaattttta
3901 cttatgtcaa cacagctcaa tccgttcctt tgatacaagc gtgtaataga
3951 gccaatagat tggccagatc ggcatggcta ttattgcatg tctacatcga
4001 accagagttg cagctattga gcgatgaagt ggtggacata ttcgaccaac
4051 tgacaagcaa gactttttta gatgtagcaa aatcggctgc ggacagtgcg
4101 gagggcaaca ttccggcaac gaaggtattg acagacctcc aggcagtgga
4151 ttcagcaacg ctgccgagta ctttggatcc atccacaagt atgctccaac
4201 cagctccttt actcggcgaa cctacgacaa attaactcga tacattcatg
4251 atggggtaag tcgaagtagt cagagagaaa tttcatcatt gtcggatgat
4301 ttagttagat ttagtactct cacagatttt actgtcatcg attttattac
4351 taagaaatta gatttagaac gtccgattag tactcaagga gatttattgg
4401 cgttagaacc tagatgcaag ggtgacctcg ctgtagcaag acttaagatt
4451 aaggacataa taggtaggat tgataaggat attagaacgt ggtgtgaagc
4501 aaatttatgc catttggatg caatcttggt aacgaacttg ataatctggg
4551 gacaaatctg ggggttggaa attctgaaag ctttacattc aacaggaata
4601 ttaaacgatt ttgatacttt cgcaacaaaa ggaagcaaga ttagtgcatt
4651 tgtcaagcgt tttcccttcg acaaggatga tgctaaagct agatgggcag
4701 agatcaatac gctgacgggc tatttgcaga atgattttgg aaacttcgat
4751 tacgataagg aatttgaagc tttagctacc ggagatagta accaccccgc
4801 ttggtgggaa gaagtattca ctaagaaaat aaaagagttg atgacacatc
4851 aagaacacaa aaagtatatc agttttgaaa aatatgttaa ggaaggatat
4901 tggataacat ctggcagcag cagtatcggc aaagtcaatt ggtcatatga
4951 cggagacttg ggcaaattca aggctagaaa gaacatgtta ttagatctat
5001 atacgccgga cgaaatctac aaaatggctg tagaatggga cgggaaacta
5051 gagaatagag tgttcatcaa agatgaattg gcaaagagaa gattggcagt
5101 ggcaagcaat attgaagcat atttgaatca agggtatata ttttatctat
5151 ttggacatgg ctttaaaaat tggaaataca taacattaga cgaaacacca
5201 ggtgaaacgc atcttaggaa ctgtgaaaca attaaagcat tgaaagacgg
5251 gtgttttgcc ctaccttttg atttcaaagg gtttgacaga caaccaacaa
5301 tttgggaagt gaagcagatt acgaaacgcg tcatagacca aatcaaatat
5351 ttggtacctc cacaagatcg acatttattc actaaaatag ctgcgaaaaa
5401 tatttcgtgt tacgacaata attacctgta ctcaccgtta acaaaggaaa
5451 caaagaaaca gactaacggc ataccttctg gaatacgtcc aacaagtttc
5501 atcggcaatg tttggaatat gataacaacg gatatagcaa gagatcagac
5551 gagtttgata ttgggcaaag ataacattag gttaatagca ttgaaaggcg
5601 acgacacaaa aatattagct aaggatttca tgacatgtct ggtgtttagg
5651 tatagctatc aggcaatcaa cgccgttgga gaaaacagca agtttggaat
5701 tatgcaaaat tgttgcgaat tcttaaggac agaaatatct actcaaggcg
5751 tcagaggctg gacaaatcgg gctatcccta gcgtgacaca aaggaaaccg
5801 tggaacccac aaccatggac tgcaaatcaa caagttgaga caaccgctaa
5851 taatatctat ttattagaaa ggagaagcaa gaaacaattg gattggttac
5901 atcaagcaaa caaaattaag tggagtaaat acacgggaca gagctatcac
5951 tggctgcacc tgcctaaacg actgggtggt ttcggaatat acgaatggaa
6001 agggtggaaa actactagca agctaccact tgctgacatc ccaacgttcg
6051 atgttcctgg actgtttagt gaaaacatca acttgacgtg gaagcaaatg
6101 acagatgagg aaaagacggc ttatcaacaa gtcgaatttt caatgaaaat
6151 agcagccgac gacattcctg gaccgcaaaa acacatttct agcaattata
6201 tcaaaaattt aaggaagttg aaaccggtat gggagaagac ggttgtaccc
6251 acatacaggt tttacaaaac agaaggacca acgtgcgaaa ataacatttg
6301 gcctagacgt atgattcaat ctcatgaggc tggtccaaac ggaatgccaa
6351 tattcagcga atttataaga caacatcaaa tcgcgaagaa agctaagatt
6401 gagataccta gtctaaaaga atgtttggcc aaatggtatc ctgaagctta
6451 caaaactatg acggaatatg aaaggaaagg atggcatagg actgatgcaa
6501 ttaacattgc aacaggtaaa gtccctcttg aaccaacagg gatattgaat
6551 ccaatactaa caccctggat aagtaagata gtcgtcaaaa gtggtttttc
6601 tttttggcga ggaagagaaa acatagctct gcacttaaca tcagtatgca
6651 agcaggccgt tcagtacatc cagaacgagg gaggcaacta catgtatgct
6701 ttctaaagag tcttcgagac tcctatattt tctacacaat aacaacataa
6751 tccagctgga taacgcagaa gatatagtcg