Sequence of DPV Drosophila melanogaster American nodavirus
Drosophila melanogaster American nodavirus (ANV) SW-2009a segment RNA1, complete sequence.
ACC No: GQ342965
Dated: 2010-02-05 | Length: 3107 | CRC: 1655082543
ID GQ342965; SV 1; linear; genomic RNA; STD; VRL; 3107 BP.
XX
AC GQ342965;
XX
DT 09-NOV-2009 (Rel. 102, Created)
DT 05-FEB-2010 (Rel. 103, Last updated, Version 2)
XX
DE Drosophila melanogaster American nodavirus (ANV) SW-2009a segment RNA1,
DE complete sequence.
XX
KW .
XX
OS Drosophila melanogaster American nodavirus (ANV) SW-2009a
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Nodaviridae;
OC unclassified Nodaviridae.
XX
RN [1]
RP 1-3107
RX PUBMED; 20080648.
RA Wu Q., Luo Y., Lu R., Lau N., Lai E.C., Li W.X., Ding S.W.;
RT "Virus discovery by deep sequencing and assembly of virus-derived small
RT silencing RNAs";
RL Proc. Natl. Acad. Sci. U.S.A. 107(4):1606-1611(2010).
XX
RN [2]
RP 1-3107
RA Wu Q., Ding S.-W.;
RT ;
RL Submitted (29-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology & Microbiology, UC Riverside, 900 University Ave,
RL Riverside, CA 92521, USA
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CC GenBank Accession Numbers GQ342965-GQ342966 represent the complete
CC genome of Drosophila melanogaster American nodavirus (ANV)
CC SW-2009a.
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FH Key Location/Qualifiers
FH
FT source 1. .3107
FT /organism="Drosophila melanogaster American nodavirus (ANV)
FT SW-2009a"
FT /segment="RNA1"
FT /host="Drosophila melanogaster"
FT /lab_host="S2 cells"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="Feb-2009"
FT /db_xref="taxon:663279"
FT CDS 40. .3036
FT /codon_start=1
FT /product="protein A"
FT /protein_id="ACU32794.1"
FT /translation="MTLKVILGEHQITRTELLVGLATVSGCGAVAYCISKFWGYGAIAP
FT YPQSGGNRVTRALQRAVIDKTKTPIETRFYPLDSLRTVTPKRAFNNGHAVSGAVRDAAR
FT RLIDEAITSVGGSKFEVNPNPNSSTGLRNHFHFAVGDLAQDFRNDTPAEDAFIVGVDVD
FT YYVTEPDVLLEHMRPVVLHTFNPKKVSGFDADSPFTIKNNLVEYKVSGGAAWVHPVWDW
FT CEAGEFIASRVRTSWKEWFLQLPLRIVGLEKVGYHKIHHCRPWTDCPDRTLVYTIPQYT
FT VWRFNWIDTELHVRKLKRIEYQDETKPGWNRLEYVTDKNELMVSIGREGEHAQITIEKE
FT KLDMLSGLSATQSVNARLIGMGHKDPKYTSMIVQYYTGKKVVSPISPTVYKPTMPRVHW
FT PVTSDADVPEVSARQYTLPIVSDCMMMPMIKRWETMSESIERRVTFVANDKKPSDRIAR
FT IADTFVRLMNGPFNNLDPLSIEETIERLNKPSQQLQLRAVFEIIGVEPRQLIESFNKNE
FT PGMKSSRIISGFPDILFILKVSRYTLAYSDIVLHAEHNQHWYYPGRNPTEIADGVCEFV
FT SDCDAEVIETDFSNLDGRVSGWMQRNIAQKAMVQAFRPEYRDEIISFMDTIIHCPATAK
FT RFGFRYEPGVGVKSGSPTTTPHNTQYNACVEFTALTIEHPYAEPEDLFRLIGPKCGDDG
FT LSRAIIRNSIDRAAKCYGLELKVERYNPEIGLCFLSRVFVDPLATTTTIQDPLRTLRKL
FT HLTARDPTIPLADAACDRVEGYLCTDALTPLISDYCKMVLRLYGPTASTEEVRNQRRSR
FT NKEKPYWLMCDGSWPQHPQDVHLMKQVLIKRTRIDEDQVDTLIGRFAAMKDVWEKITRD
FT SEESAAACTFDEDGVMPGSVDESLPKLNDAKQTRANPGTSRPHSNGGGSSNGNELSGRT
FT EQRAQGPRQPPCLPKQGKANGKPNGNITAGETQRGGIPRRKGPRGGKTDTRRTPPKAGA
FT QPQPSNNRK"
FT CDS 2738. .3058
FT /codon_start=1
FT /product="protein B2"
FT /protein_id="ACU32795.1"
FT /translation="MPSKLALIQELPDRIQTAAEAAMGMSYQDAPNNVRRDLDNLHACL
FT NKAKLTVSRMVTSLLEKPSVVAYLEGRAPEEAKPTLEERLRKLELSHSLPTTGSDPPPA
FT KP"
XX
SQ Sequence 3107 BP; 872 A; 771 C; 767 G; 697 T; 0 other;
gq342965 Length: 3107 05-FEB-2010 Type: N Check: 7361 ..
1 gtttgatata caaataaaac accgaagcgc cccaaaacaa tgaccctaaa
51 agttattctt ggagaacacc agatcacccg gactgaattg ctcgtcgggc
101 ttgcaaccgt atctgggtgc ggtgccgtag cgtactgcat atccaagttc
151 tggggctatg gggcaattgc gccctatccc cagagtggag ggaaccgagt
201 tacacgcgca ttgcaacggg ctgtcattga caaaacgaag accccgatag
251 aaacacgttt ctatccgctt gacagcctgc gtaccgtaac gcctaagcgt
301 gcctttaaca acgggcatgc cgtttcagga gccgtacgtg atgccgcccg
351 tcgtttaatc gacgaggcta taacatctgt aggaggatct aaatttgaag
401 ttaacccgaa cccaaattcc agcactggac tgcggaacca tttccacttc
451 gccgtcggtg atctggcgca agactttcgc aatgatacac cagcggaaga
501 cgccttcatc gttggtgttg atgttgatta ttatgtcacc gagccagatg
551 tgctgttaga gcacatgcgt ccagtggttt tacacacctt caacccgaag
601 aaagtgagtg gctttgatgc tgactcacca ttcaccatca agaacaacct
651 ggttgaatac aaggttagtg gaggtgctgc atgggtccat ccagtttggg
701 attggtgcga agctggtgag ttcatcgcca gccgcgtccg aacaagttgg
751 aaggaatggt ttttacaact gccattgaga atagttggtt tagaaaaggt
801 cggttatcac aaaatccacc attgtagacc ctggactgat tgtccagatc
851 gaacactcgt ctacacaata ccgcagtata ctgtttggcg gttcaattgg
901 atcgacaccg agctacacgt acgcaaacta aaacggattg aataccagga
951 tgaaactaaa cctggttgga acagattgga gtatgtcacc gacaagaacg
1001 aactaatggt ttccatcggt agagaaggag agcacgctca gattaccatc
1051 gagaaagaaa agttggatat gctctcggga ttatccgcca cacaatctgt
1101 caacgctagg cttattggta tggggcacaa ggacccaaag tacacatcta
1151 tgattgttca gtattacacc ggcaagaaag ttgtgtcacc aattagtcca
1201 actgtgtata aacctacaat gccacgcgtc cattggccag taaccagtga
1251 cgcagatgta ccagaagtga gcgcacgcca atacaccttg cctatcgtga
1301 gtgactgtat gatgatgcca atgattaaac gctgggagac aatgtctgaa
1351 tcaattgaac gcagggtaac ctttgtcgcc aacgacaaga aaccaagcga
1401 ccgtatcgcg aggatcgccg acactttcgt acggttgatg aacgggcctt
1451 tcaacaacct tgacccattg tcaatcgagg aaacgattga gcgtctgaac
1501 aagccgtccc aacaactaca acttagggcg gttttcgaga taatcggagt
1551 tgagccgcgt caattgattg agtcattcaa caaaaacgaa ccgggaatga
1601 aatctagtcg gataatatcc ggctttcctg acatcctttt catcctgaag
1651 gtctccagat acacattagc gtactcggat atcgttctac atgccgagca
1701 taatcaacat tggtattatc ctggaaggaa cccaactgag atcgccgatg
1751 gggtttgtga atttgtcagt gactgtgacg ctgaagtcat agaaacggat
1801 ttttccaacc ttgatggccg ggtttctggc tggatgcaac gaaatatcgc
1851 tcaaaaggcg atggttcaag cattccggcc agaatacaga gatgagatca
1901 tttcatttat ggacacgata atccattgtc cagccacagc taaacgcttt
1951 ggtttccgat atgagcctgg agttggtgtt aaaagtggta gtccaacaac
2001 cacgccgcat aacacgcaat ataatgcatg tgtcgaattt acagctctca
2051 ccattgagca cccttatgcc gaaccagaag atctgttccg attaatcggt
2101 ccgaagtgcg gtgatgatgg cctgtcgcgg gccatcattc gaaattctat
2151 cgaccgtgct gccaaatgtt atggcttgga gctcaaagtg gaacgataca
2201 acccagagat aggtctttgc tttctctcac gtgtttttgt ggacccgctc
2251 gcaacgacga caacaataca agacccactg cgtacactgc gaaaactgca
2301 cctcacagca agagatccta cgataccact agctgacgcg gcttgcgacc
2351 gcgtcgaggg ttatctttgt accgatgcgc ttactccgtt gatatcggat
2401 tactgcaaaa tggtactacg gttatacggg ccgactgcct ccacagagga
2451 agtcaggaac caacgtagaa gccggaataa ggagaaaccc tactggttaa
2501 tgtgcgatgg atcatggcca cagcatccgc aagacgtcca tttgatgaag
2551 caggttttaa tcaagcgtac tagaattgac gaagatcagg tcgatacact
2601 cattgggcgt tttgccgcaa tgaaggatgt ctgggagaag attacacgtg
2651 acagcgagga gagcgccgct gcatgtacgt ttgatgaaga cggcgttatg
2701 ccgggctccg tggatgaatc gttacctaag cttaacgatg ccaagcaaac
2751 tcgcgctaat ccaggaactt cccgaccgca ttcaaacggc ggcggaagca
2801 gcaatgggaa tgagctatca ggacgcaccg aacaacgtgc gcagggacct
2851 cgacaacctc catgcttgcc taaacaaggc aaagctaacg gtaagccgaa
2901 tggtaacatc actgctggag aaacccagcg tggtggcata cctcgaagga
2951 agggcccccg aggaggcaaa accgacactc gaagaacgcc tccgaaagct
3001 ggagctcagc cacagccttc caacaaccgg aagtgacccc ccacccgcta
3051 aaccgtagct gactcctagg agcacctaca cccgttctag cccgaaaggg
3101 cggaggt