Sequence of DPV Drosophila melanogaster American nodavirus
Drosophila melanogaster American nodavirus (ANV) SW-2009a segment RNA1, complete sequence.
ACC No: GQ342965
Dated: 2010-02-05 | Length: 3107 | CRC: 1655082543
ID GQ342965; SV 1; linear; genomic RNA; STD; VRL; 3107 BP. XX AC GQ342965; XX DT 09-NOV-2009 (Rel. 102, Created) DT 05-FEB-2010 (Rel. 103, Last updated, Version 2) XX DE Drosophila melanogaster American nodavirus (ANV) SW-2009a segment RNA1, DE complete sequence. XX KW . XX OS Drosophila melanogaster American nodavirus (ANV) SW-2009a OC Viruses; ssRNA positive-strand viruses, no DNA stage; Nodaviridae; OC unclassified Nodaviridae. XX RN [1] RP 1-3107 RX PUBMED; 20080648. RA Wu Q., Luo Y., Lu R., Lau N., Lai E.C., Li W.X., Ding S.W.; RT "Virus discovery by deep sequencing and assembly of virus-derived small RT silencing RNAs"; RL Proc. Natl. Acad. Sci. U.S.A. 107(4):1606-1611(2010). XX RN [2] RP 1-3107 RA Wu Q., Ding S.-W.; RT ; RL Submitted (29-JUN-2009) to the EMBL/GenBank/DDBJ databases. RL Plant Pathology & Microbiology, UC Riverside, 900 University Ave, RL Riverside, CA 92521, USA XX CC GenBank Accession Numbers GQ342965-GQ342966 represent the complete CC genome of Drosophila melanogaster American nodavirus (ANV) CC SW-2009a. XX FH Key Location/Qualifiers FH FT source 1. .3107 FT /organism="Drosophila melanogaster American nodavirus (ANV) FT SW-2009a" FT /segment="RNA1" FT /host="Drosophila melanogaster" FT /lab_host="S2 cells" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Feb-2009" FT /db_xref="taxon:663279" FT CDS 40. .3036 FT /codon_start=1 FT /product="protein A" FT /protein_id="ACU32794.1" FT /translation="MTLKVILGEHQITRTELLVGLATVSGCGAVAYCISKFWGYGAIAP FT YPQSGGNRVTRALQRAVIDKTKTPIETRFYPLDSLRTVTPKRAFNNGHAVSGAVRDAAR FT RLIDEAITSVGGSKFEVNPNPNSSTGLRNHFHFAVGDLAQDFRNDTPAEDAFIVGVDVD FT YYVTEPDVLLEHMRPVVLHTFNPKKVSGFDADSPFTIKNNLVEYKVSGGAAWVHPVWDW FT CEAGEFIASRVRTSWKEWFLQLPLRIVGLEKVGYHKIHHCRPWTDCPDRTLVYTIPQYT FT VWRFNWIDTELHVRKLKRIEYQDETKPGWNRLEYVTDKNELMVSIGREGEHAQITIEKE FT KLDMLSGLSATQSVNARLIGMGHKDPKYTSMIVQYYTGKKVVSPISPTVYKPTMPRVHW FT PVTSDADVPEVSARQYTLPIVSDCMMMPMIKRWETMSESIERRVTFVANDKKPSDRIAR FT IADTFVRLMNGPFNNLDPLSIEETIERLNKPSQQLQLRAVFEIIGVEPRQLIESFNKNE FT PGMKSSRIISGFPDILFILKVSRYTLAYSDIVLHAEHNQHWYYPGRNPTEIADGVCEFV FT SDCDAEVIETDFSNLDGRVSGWMQRNIAQKAMVQAFRPEYRDEIISFMDTIIHCPATAK FT RFGFRYEPGVGVKSGSPTTTPHNTQYNACVEFTALTIEHPYAEPEDLFRLIGPKCGDDG FT LSRAIIRNSIDRAAKCYGLELKVERYNPEIGLCFLSRVFVDPLATTTTIQDPLRTLRKL FT HLTARDPTIPLADAACDRVEGYLCTDALTPLISDYCKMVLRLYGPTASTEEVRNQRRSR FT NKEKPYWLMCDGSWPQHPQDVHLMKQVLIKRTRIDEDQVDTLIGRFAAMKDVWEKITRD FT SEESAAACTFDEDGVMPGSVDESLPKLNDAKQTRANPGTSRPHSNGGGSSNGNELSGRT FT EQRAQGPRQPPCLPKQGKANGKPNGNITAGETQRGGIPRRKGPRGGKTDTRRTPPKAGA FT QPQPSNNRK" FT CDS 2738. .3058 FT /codon_start=1 FT /product="protein B2" FT /protein_id="ACU32795.1" FT /translation="MPSKLALIQELPDRIQTAAEAAMGMSYQDAPNNVRRDLDNLHACL FT NKAKLTVSRMVTSLLEKPSVVAYLEGRAPEEAKPTLEERLRKLELSHSLPTTGSDPPPA FT KP" XX SQ Sequence 3107 BP; 872 A; 771 C; 767 G; 697 T; 0 other; gq342965 Length: 3107 05-FEB-2010 Type: N Check: 7361 .. 1 gtttgatata caaataaaac accgaagcgc cccaaaacaa tgaccctaaa 51 agttattctt ggagaacacc agatcacccg gactgaattg ctcgtcgggc 101 ttgcaaccgt atctgggtgc ggtgccgtag cgtactgcat atccaagttc 151 tggggctatg gggcaattgc gccctatccc cagagtggag ggaaccgagt 201 tacacgcgca ttgcaacggg ctgtcattga caaaacgaag accccgatag 251 aaacacgttt ctatccgctt gacagcctgc gtaccgtaac gcctaagcgt 301 gcctttaaca acgggcatgc cgtttcagga gccgtacgtg atgccgcccg 351 tcgtttaatc gacgaggcta taacatctgt aggaggatct aaatttgaag 401 ttaacccgaa cccaaattcc agcactggac tgcggaacca tttccacttc 451 gccgtcggtg atctggcgca agactttcgc aatgatacac cagcggaaga 501 cgccttcatc gttggtgttg atgttgatta ttatgtcacc gagccagatg 551 tgctgttaga gcacatgcgt ccagtggttt tacacacctt caacccgaag 601 aaagtgagtg gctttgatgc tgactcacca ttcaccatca agaacaacct 651 ggttgaatac aaggttagtg gaggtgctgc atgggtccat ccagtttggg 701 attggtgcga agctggtgag ttcatcgcca gccgcgtccg aacaagttgg 751 aaggaatggt ttttacaact gccattgaga atagttggtt tagaaaaggt 801 cggttatcac aaaatccacc attgtagacc ctggactgat tgtccagatc 851 gaacactcgt ctacacaata ccgcagtata ctgtttggcg gttcaattgg 901 atcgacaccg agctacacgt acgcaaacta aaacggattg aataccagga 951 tgaaactaaa cctggttgga acagattgga gtatgtcacc gacaagaacg 1001 aactaatggt ttccatcggt agagaaggag agcacgctca gattaccatc 1051 gagaaagaaa agttggatat gctctcggga ttatccgcca cacaatctgt 1101 caacgctagg cttattggta tggggcacaa ggacccaaag tacacatcta 1151 tgattgttca gtattacacc ggcaagaaag ttgtgtcacc aattagtcca 1201 actgtgtata aacctacaat gccacgcgtc cattggccag taaccagtga 1251 cgcagatgta ccagaagtga gcgcacgcca atacaccttg cctatcgtga 1301 gtgactgtat gatgatgcca atgattaaac gctgggagac aatgtctgaa 1351 tcaattgaac gcagggtaac ctttgtcgcc aacgacaaga aaccaagcga 1401 ccgtatcgcg aggatcgccg acactttcgt acggttgatg aacgggcctt 1451 tcaacaacct tgacccattg tcaatcgagg aaacgattga gcgtctgaac 1501 aagccgtccc aacaactaca acttagggcg gttttcgaga taatcggagt 1551 tgagccgcgt caattgattg agtcattcaa caaaaacgaa ccgggaatga 1601 aatctagtcg gataatatcc ggctttcctg acatcctttt catcctgaag 1651 gtctccagat acacattagc gtactcggat atcgttctac atgccgagca 1701 taatcaacat tggtattatc ctggaaggaa cccaactgag atcgccgatg 1751 gggtttgtga atttgtcagt gactgtgacg ctgaagtcat agaaacggat 1801 ttttccaacc ttgatggccg ggtttctggc tggatgcaac gaaatatcgc 1851 tcaaaaggcg atggttcaag cattccggcc agaatacaga gatgagatca 1901 tttcatttat ggacacgata atccattgtc cagccacagc taaacgcttt 1951 ggtttccgat atgagcctgg agttggtgtt aaaagtggta gtccaacaac 2001 cacgccgcat aacacgcaat ataatgcatg tgtcgaattt acagctctca 2051 ccattgagca cccttatgcc gaaccagaag atctgttccg attaatcggt 2101 ccgaagtgcg gtgatgatgg cctgtcgcgg gccatcattc gaaattctat 2151 cgaccgtgct gccaaatgtt atggcttgga gctcaaagtg gaacgataca 2201 acccagagat aggtctttgc tttctctcac gtgtttttgt ggacccgctc 2251 gcaacgacga caacaataca agacccactg cgtacactgc gaaaactgca 2301 cctcacagca agagatccta cgataccact agctgacgcg gcttgcgacc 2351 gcgtcgaggg ttatctttgt accgatgcgc ttactccgtt gatatcggat 2401 tactgcaaaa tggtactacg gttatacggg ccgactgcct ccacagagga 2451 agtcaggaac caacgtagaa gccggaataa ggagaaaccc tactggttaa 2501 tgtgcgatgg atcatggcca cagcatccgc aagacgtcca tttgatgaag 2551 caggttttaa tcaagcgtac tagaattgac gaagatcagg tcgatacact 2601 cattgggcgt tttgccgcaa tgaaggatgt ctgggagaag attacacgtg 2651 acagcgagga gagcgccgct gcatgtacgt ttgatgaaga cggcgttatg 2701 ccgggctccg tggatgaatc gttacctaag cttaacgatg ccaagcaaac 2751 tcgcgctaat ccaggaactt cccgaccgca ttcaaacggc ggcggaagca 2801 gcaatgggaa tgagctatca ggacgcaccg aacaacgtgc gcagggacct 2851 cgacaacctc catgcttgcc taaacaaggc aaagctaacg gtaagccgaa 2901 tggtaacatc actgctggag aaacccagcg tggtggcata cctcgaagga 2951 agggcccccg aggaggcaaa accgacactc gaagaacgcc tccgaaagct 3001 ggagctcagc cacagccttc caacaaccgg aagtgacccc ccacccgcta 3051 aaccgtagct gactcctagg agcacctaca cccgttctag cccgaaaggg 3101 cggaggt