Sequence of DPV Citrus tristeza virus

Citrus tristeza virus isolate Kpg3 coat protein gene, complete cds.

ACC No: GQ392063

Dated: 2010-06-10 | Length: 672 | CRC: -428225106

                
ID   GQ392063; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC   GQ392063;
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DT   13-MAY-2010 (Rel. 104, Created)
DT   10-JUN-2010 (Rel. 105, Last updated, Version 2)
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DE   Citrus tristeza virus isolate Kpg3 coat protein gene, complete cds.
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RP   1-672
RX   PUBMED; 20437063.
RA   Biswas K.K.;
RT   "Molecular characterization of Citrus tristeza virus isolates from the
RT   Northeastern Himalayan region of India";
RL   Arch. Virol. 155(6):959-963(2010).
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RN   [2]
RP   1-672
RA   Biswas K.K., Tarafdar A., Kumari S.;
RT   ;
RL   Submitted (15-JUL-2009) to the EMBL/GenBank/DDBJ databases.
RL   Division of Plant Pathology, Indian Agricultural Research Institute, New
RL   Delhi, Delhi 110012, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .672
FT                   /organism="Citrus tristeza virus"
FT                   /host="Citrus reticulata (Darjeeling mandarin)"
FT                   /isolate="Kpg3"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Darjeeling Hills, West Bengal"
FT                   /collected_by="K.K. Biswas"
FT                   /collection_date="2006"
FT                   /identified_by="K.K. Biswas"
FT                   /db_xref="taxon:12162"
FT   CDS             1. .672
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="ACU77878.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVVAAESSFASVNLHIDPTLIAMNDV
FT                   RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGMT
FT                   YTREGVEVELSDKLWTDVVFNSKGIGNRTNALRVWGRSNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 198 A; 125 C; 170 G; 179 T; 0 other;

gq392063 Length: 672  10-JUN-2010  Type: N  Check: 2848  ..

       1  atggacgacg aaacaaagaa attgaagaac aaaaacaagg agacgaaaga
      51  aggcgacgat gttgttgcag cagagtcttc tttcgcttcc gtaaacttac
     101  acatcgatcc gactctgata gcgatgaacg atgtgcgtca gttgggtacc
     151  caacagaatg ctgctttgaa tagagatttg tttcttacct tgaaagggaa
     201  gtatcctaac ttacctgaca aagataaaga ctttcacata gctatgatgt
     251  tatatcgttt agcagttaag agttcgtcgt tacaaagcga cgatgatacc
     301  acgggtatga cgtacactcg ggaaggtgtt gaagtggaac tgtctgacaa
     351  actttggaca gacgtcgtgt ttaactctaa gggtattggt aaccgtacta
     401  acgcccttcg agtctggggt agatctaacg acgcccttta tttggctttt
     451  tgtagacaga accgcaactt gagttatggt ggacgtccgt tagatgcagg
     501  aattccagcc gggtatcact acctgtgtgc agatttcttg accggagctg
     551  gcttgactga tttagaatgt gcagtgtaca tacaagctaa agagcaatta
     601  ttgaaaaagc gaggggctga tgaggtcgta gttactaatg tcaggcagct
     651  tgggaaattt aacacacgtt ga