Sequence of DPV Panicum streak virus
Panicum streak virus isolate A_ZA_Ill_g263, complete genome.
ACC No: GQ415386
Dated: 2009-12-23 | Length: 2708 | CRC: 1054988364
ID GQ415386; SV 1; circular; genomic DNA; STD; VRL; 2708 BP.
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AC GQ415386;
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DT 23-DEC-2009 (Rel. 103, Created)
DT 23-DEC-2009 (Rel. 103, Last updated, Version 1)
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DE Panicum streak virus isolate A_ZA_Ill_g263, complete genome.
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KW .
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OS Panicum streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2708
RX PUBMED; 19903330.
RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K.,
RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W.,
RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.;
RT "Comparative analysis of Panicum streak virus and Maize streak virus
RT diversity, recombination patterns and phylogeography";
RL Virol. J. 6:194-194(2009).
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RN [2]
RP 1-2708
RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K.,
RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W.,
RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N.,
RA Martin D.P.;
RT ;
RL Submitted (25-JUL-2009) to the EMBL/GenBank/DDBJ databases.
RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town,
RL WP 7701, South Africa
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FH Key Location/Qualifiers
FH
FT source 1. .2708
FT /organism="Panicum streak virus"
FT /host="Ehrharta calycina"
FT /isolate="A_ZA_Ill_g263"
FT /mol_type="genomic DNA"
FT /country="South Africa"
FT /lat_lon="26.77 S 26.83 E"
FT /collection_date="2008"
FT /db_xref="taxon:10826"
FT CDS 153. .476
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ADA67936.1"
FT /translation="MDASSTTPFPFPQPPRVPSAAPVAGGLPWSRVGEIVIFTFVSVLG
FT LYLLWLWVLKDCILLLKAQRGRSTEELIFGPGERPAVASADGSRSVPDPSPSCPPGPRP
FT FVV"
FT CDS 487. .1230
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ADA67937.1"
FT /translation="MSGALKRKRSDEVAWSRRKPVKKQARVPPPRAGPSVRRGLPALQI
FT QTLTAAGDTMITVPSGGICSLIGTYARGSDEGNRHTNETLTYKVALDYHFVATAAACKY
FT SSIGVGVMWLVYDAQPTGNSPEVKDIFPHSDTLSAFPYTWKVGREVCHRFVVKRRWCFT
FT METNGRIGSDVPPANTAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKVGAIKKGALYIV
FT IAPGNGLEFTVHGQCRLYFKSVGNQ"
FT CDS complement(1598. .2572)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="ADA67938.1"
FT /translation="MSTSLSITSDGRHSVRSFRHRNANTFLTYSKCPLEPEFIGEHLFR
FT LTKDFEPAYILVVRETHQDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAKSTDK
FT VREYILKDPKDKWEKGTYIPRKKSFVPPGKENSEKKPSKDEVMKEIMTHATSRAEYLSL
FT VQTSLPYDWGTKLSYFEYSASRLFPDIAEPYSNPHPATDPDLLCNETLQDWLEPNIYQV
FT SPKAYMLLEPSCLSLEQAKADLEWLSETTRLFQEQESEASTSSAQHGQVKHPGPEALDD
FT TTTGRIISTGLHTMKKLRTMSWTTFPSSSVRAGSSSSAVKKTT"
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SQ Sequence 2708 BP; 560 A; 718 C; 726 G; 704 T; 0 other;
gq415386 Length: 2708 23-DEC-2009 Type: N Check: 2678 ..
1 taatattacc gctcacaccc catgcgagcc acggccctgt gtggcgagcg
51 gtccccggat gttcttaccc cggtgcgatt tctttagctg cgtcttcttt
101 agcagctgcc cccactgtcc tataagttgc ttccccggtg cgattccgca
151 tcatggatgc tagcagcacc actccttttc ctttccctca gccgcctcgg
201 gtaccctctg cagctccggt cgccggaggc ctgccgtgga gtcgcgtcgg
251 tgagatagtc atctttactt ttgtttcagt gctaggcctt tacctgcttt
301 ggctttgggt gctcaaagat tgtatcttac ttctgaaggc tcagcgaggt
351 agatccacgg aggagctgat ctttggtcct ggtgagaggc cagccgtcgc
401 ttctgccgac ggttctcgct ccgttccaga tccgtctccg tcctgtccgc
451 cgggacctag acctttcgtg gtctagagca ctcagcatgt ccggagcttt
501 gaagcgcaag cgttcggatg aggttgcctg gagtcgaagg aagcccgtca
551 agaagcaagc ccgggttccc cctccccggg ctggcccctc tgtcaggaga
601 ggactccctg cccttcagat ccagacgctt acggcggctg gtgacactat
651 gatcacggtg ccgtccggcg gcatctgcag tctgattggc acgtatgccc
701 ggggctctga tgaaggtaac cgccacacca acgagactct gacgtacaag
751 gttgcgctgg attaccactt cgttgctact gctgcggcct gcaagtactc
801 cagcattgga gtgggtgtca tgtggttggt gtatgatgcg cagccgaccg
851 gcaattcacc ggaggtgaag gacatcttcc ctcactccga cacgctctca
901 gcgttcccct acacttggaa ggttggcagg gaggtctgcc atcgcttcgt
951 tgttaaacgg cgctggtgct tcaccatgga gactaacggc cggatcggtt
1001 cagacgttcc tccggccaat accgcttggc cgccttgcaa gaaggacatc
1051 tacttccaca agttctgcac gggactcggc gtgaagacgg agtggaagaa
1101 cgttacagac gggaaggtcg gcgctattaa gaagggcgcc ttgtacattg
1151 tcattgcgcc tggaaacggg cttgagttta cggttcacgg ccagtgccgt
1201 ctgtacttta agtcagttgg taatcagtga ttaccacatc aattaataaa
1251 acaagtttta ttcaaagagc gaagctcata cattacatag tcagcagata
1301 tgctgacaga aaacacacac atagtgcagc ctcgggctaa agaccgagtc
1351 tcaaacgacc caacttaaaa acaaatcaaa acaagcatga tattattaaa
1401 tatgcagccg ccggcttaag caggagtgaa ccacttctct cctgcctgca
1451 ttacgtagat ttcgcagttt gcgtagaagt agtcatactg cgccggagtc
1501 atgtccttca gccagtcctc atcctcgttg gcgaggatga tagttgggta
1551 tgctctttga ggccaccttc cgtctcttcc ccgtacttcg gggttcacta
1601 tgtagtcttt ttgacagccg acgagctgct tccagcacgg acagaacttg
1651 aagggaatgt cgtccacgac attgtacgca gcttcttcat cgtatgaaga
1701 ccagtcgata ttattctgcc agtagttgtg tcgtccaagg cttctggccc
1751 aggatgtttt acctgtccgt gttgggccga cgatgtagag gcttcgcttt
1801 cttgctcctg gaataatctg gttgtttcag acaaccattc taagtcagct
1851 ttggcttgct ctaggcttaa gcagctaggt tcaaggagca tgtatgcttt
1901 aggactgacc tggtagatgt taggctcaag ccagtcctgg agtgtttcgt
1951 tgcagaggag gtcagggtca gtggcaggat gaggattgct gtaaggctct
2001 gcaatgtccg ggaacaggcg actagctgag tactcaaagt atgacagttt
2051 tgtgccccag tcgtaaggca gtgaagtctg cactagtgaa aggtactctg
2101 ctctgctagt ggcatgtgtc atgatctcct tcatgacctc atccttagaa
2151 ggcttcttct cagaattttc cttacctgga ggaacgaagc tcttcttcct
2201 tggtatgtaa gtacctttct cccacttgtc cttgggatcc ttcagtatgt
2251 actcacgtac cttgtcagtg ctcttggcgc tctgtatatt cggatgatac
2301 cgatctatgt caaagtacct ctcgtcacga gtagtgacag gcttgatgca
2351 ctggagaaga gcatggcagt gccatgttcc gtcttggtga gtctctctca
2401 ctaccaggat gtatgctggc tcaaagtcct tagtgagcct gaagagatgc
2451 tcaccgatga actcaggttc tagtggacac ttgctgtatg tgaggaaggt
2501 gttcgcgttc cggtgcctga aggaccggac gctgtgcctg ccatcagagg
2551 tgatagacag agaggtcgac attagcgcag gaggttgggc aatctcaggc
2601 tctcctcagc tctatcccta gacagctgcg aaataatccg cccacccccc
2651 gtgcctttta tagctgcttg gtgggctggg ccggccggcc catggggtgt
2701 gagcagca