Sequence of DPV Panicum streak virus
Panicum streak virus isolate E_KE_Nye5_g359, complete genome.
ACC No: GQ415390
Dated: 2009-12-23 | Length: 2724 | CRC: 1919253890
ID GQ415390; SV 1; circular; genomic DNA; STD; VRL; 2724 BP. XX AC GQ415390; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate E_KE_Nye5_g359, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2724 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol. J. 6:194-194(2009). XX RN [2] RP 1-2724 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the EMBL/GenBank/DDBJ databases. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX FH Key Location/Qualifiers FH FT source 1. .2724 FT /organism="Panicum streak virus" FT /host="Panicum maximum" FT /isolate="E_KE_Nye5_g359" FT /mol_type="genomic DNA" FT /country="Kenya" FT /lat_lon="0.42 S 36.95 E" FT /collection_date="2008" FT /db_xref="taxon:10826" FT CDS 152. .478 FT /codon_start=1 FT /product="movement protein" FT /protein_id="ADA67948.1" FT /translation="MDASSQYSALPYPQPPRVPSAAPSAGGLPWSRVGEIAIFTFVSVL FT ALYLLWLWVLRDLILLLKAQRGVSTEELIFGPGERPAVAAADGSRPVSDPSPSCPPGPR FT PFVV" FT CDS 489. .1235 FT /codon_start=1 FT /product="coat protein" FT /protein_id="ADA67949.1" FT /translation="MSGALKRKRSDEVAWSRRKPVKKPARRPPPPRAAPSVRRGLPSLQ FT IQTLVAAGDTMITVPSGGICSLIGTYARGSGEGERHTNETLTYKVALDYHFVATAAACK FT YSSIGIGVCWLVYDAQPTGTAPTVQDIFPHPATLSAFPYTWKVGREVCHRFVVKRRWCF FT TMETNGRIGSDTPPSNVAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKDGAIKKGGFYI FT VIAPGNGLEFTCHGQCRLYFKSVGNQ" FT CDS complement(1602. .2588) FT /codon_start=1 FT /product="RepA" FT /protein_id="ADA67950.1" FT /translation="MSTEGSTSLTVTPTGRHTIRSFRHRNVNTFLTYSKCPLEPEFIGE FT HLFRLTKDYEPAYILVVRETHTDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAK FT STDKVRDYILKDPKDKWEKGTYIPRKKSFSPPGKDSSEKKPSKDEVMREIMTHATSREE FT YLSLVQSSLPYDWATKLSYFEYSASRLFPDIAETFTSPHPTSDPDLLCNETLQDWLEPN FT IYQVSPKAYMLLEPSCLSLEQAKADLDWLAETTRLLREQERQASTSSAQHGQVKHPGLE FT ASDDTTTGRTMSTGLHMMKKLSTMSLTTFPSSSVRAGSSSSAVKRTT" XX SQ Sequence 2724 BP; 544 A; 732 C; 735 G; 713 T; 0 other; gq415390 Length: 2724 23-DEC-2009 Type: N Check: 4959 .. 1 taatattacc gctcacaccc catgcgagcc gcggctctgt gcggcgagcg 51 gtcctcggat gttctacccc cggtgcgatt tctttagctg cgtgttcttt 101 agcagctgcc cccactgtcc tataagatgc tccctcggtg cgatccgcat 151 catggatgct agcagccagt actctgcttt gccgtatcct cagccacccc 201 gggtaccctc tgcagctccg tccgccggag gtctgccgtg gagtcgcgtc 251 ggtgagatag ctatcttcac ctttgtttca gtgctagctc tttacttgct 301 ttggctttgg gtcctcagag atcttatctt gcttctgaag gctcagcgag 351 gtgtatccac ggaggagctg atctttggtc ctggtgagag gccagccgtc 401 gccgctgccg acggttctcg tcctgtttcg gatccgtcgc cgtcctgtcc 451 accgggacct agacctttcg tggtctagag cactcatcat gtctggtgct 501 ttgaagcgca agcgttccga cgaggttgcc tggagtcgaa ggaagcccgt 551 gaagaagcct gcccgccggc ccccaccgcc gcgggctgct ccctctgtca 601 ggaggggtct cccttccctg cagattcaga ctttagtggc tgccggtgac 651 actatgatca ctgtgccgtc cggaggcatc tgcagtctga ttggcacgta 701 tgcccggggc tccggtgagg gtgaacgcca caccaacgag actctgacgt 751 acaaggtcgc tctggactac cacttcgttg ccaccgctgc tgcgtgtaaa 801 tacagcagta ttggcattgg agtttgctgg ttggtgtacg atgcgcagcc 851 taccggcact gccccgaccg tccaagacat ttttccacac ccggctactc 901 tctcagcatt tccctacacc tggaaggtgg ggagggaggt ctgccatcgc 951 ttcgttgtta aacggcgctg gtgctttacc atggagacta acggccggat 1001 cggttcggat acccccccgt ccaacgtggc ttggccaccc tgcaagaagg 1051 acatctactt ccacaagttc tgcacgggct tgggcgtgaa gacggagtgg 1101 aagaacgtta cagacgggaa ggacggcgcc atcaagaagg gcggcttcta 1151 catagtcatt gcgcccggca acggcctcga gttcacgtgt cacggccagt 1201 gccgtctgta ctttaagtca gttgggaatc agtgattccc acataatttt 1251 aataaaacaa gttttattca ttcagaacga agttcgtaca ttacatagtc 1301 tgcagatttg cagacgaaaa cacacacata gtgcagcctc gggctaaaga 1351 ccgagtctca aacgacccaa cttaaaaaca aatcaaaaca aacatgatat 1401 tattaaacct gcagccgccg gcttaagcag gagtgtacca cttctctcct 1451 gcttgcatta cgtagatctc gcagtttgcg tagaagtact cgtactgggc 1501 cggtgtcagt tccttcagcc agtcctcatc ctcgttggcg aggattattg 1551 taggtatgcc cttcttggcg aacctgcgtc ttttcccgta cttgggattg 1601 actatgtagt ccgtttgaca gccgacgagc tgcttccagc acggacagaa 1651 cttgaaggga atgtcgtcaa tgacattgta gagagcttct tcatcatatg 1701 aagaccagtc gacattgttc tgccagtagt tgtgtcgtcc gaggcttcta 1751 gcccaggatg ttttacctgt ccgtgttggg ccgacgatgt agaggcttgt 1801 ctttcttgct cccggagtaa tctagttgtt tcagccagcc agtctaagtc 1851 agcttttgct tgctctaggc ttaagcagct aggttcgaga agcatgtatg 1901 ctttaggact gacctggtag atgttcggct caagccagtc ctggagagtt 1951 tcgttgcaga ggaggtctgg gtcagaagtc ggatgagggc tagtgaaggt 2001 ctctgcaatg tccgggaaga ggcgactagc tgagtactca aagtatgaca 2051 gtttagtagc ccagtcatac ggcaggctgc tctgaaccag agaaaggtac 2101 tcttctctgc tagtagcatg tgtcatgatc tctctcatga cttcatcctt 2151 gctaggcttc ttctcagaac tatccttacc tggtggactg aaggacttct 2201 tccttggaat gtatgtacct ttctcccact tgtccttggg gtccttcagt 2251 atgtagtcac gcaccttgtc agtgctcttg gcgctctgta tgttgggatg 2301 gtaccgatct atgtcaaagt acctctcgtc ccgagtagtg acaggcttga 2351 tgcactggag aagagcatgg cagtgccatg ttccgtctgt gtgtgtctct 2401 ctgactacta gtatgtaggc tggctcatag tccttagtga gcctgaagag 2451 atgctcaccg atgaactccg gttctagagg acacttgctg tatgtgagga 2501 aggtgttaac gttccggtgc ctaaagctcc ggatcgtgtg cctgcctgtg 2551 ggtgtcacag tgagggaggt tgatccttcg gtcgacatta gcgctagagg 2601 tgggcaatct caggctctcc tcaactctac ccctagacag ctgcgaaata 2651 atccgcccac cccccgtccc cttttatagt tgcttggtgg gctgggccgg 2701 caggcccatg gggtgtgagc agca