Sequence of DPV Panicum streak virus

Panicum streak virus isolate E_KE_Nye5_g359, complete genome.

ACC No: GQ415390

Dated: 2009-12-23 | Length: 2724 | CRC: 1919253890

                
ID   GQ415390; SV 1; circular; genomic DNA; STD; VRL; 2724 BP.
XX
AC   GQ415390;
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DT   23-DEC-2009 (Rel. 103, Created)
DT   23-DEC-2009 (Rel. 103, Last updated, Version 1)
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DE   Panicum streak virus isolate E_KE_Nye5_g359, complete genome.
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KW   .
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OS   Panicum streak virus
OC   Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2724
RX   PUBMED; 19903330.
RA   Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K.,
RA   Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W.,
RA   Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.;
RT   "Comparative analysis of Panicum streak virus and Maize streak virus
RT   diversity, recombination patterns and phylogeography";
RL   Virol. J. 6:194-194(2009).
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RN   [2]
RP   1-2724
RA   Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K.,
RA   Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W.,
RA   Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N.,
RA   Martin D.P.;
RT   ;
RL   Submitted (25-JUL-2009) to the EMBL/GenBank/DDBJ databases.
RL   Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town,
RL   WP 7701, South Africa
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2724
FT                   /organism="Panicum streak virus"
FT                   /host="Panicum maximum"
FT                   /isolate="E_KE_Nye5_g359"
FT                   /mol_type="genomic DNA"
FT                   /country="Kenya"
FT                   /lat_lon="0.42 S 36.95 E"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:10826"
FT   CDS             152. .478
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /protein_id="ADA67948.1"
FT                   /translation="MDASSQYSALPYPQPPRVPSAAPSAGGLPWSRVGEIAIFTFVSVL
FT                   ALYLLWLWVLRDLILLLKAQRGVSTEELIFGPGERPAVAAADGSRPVSDPSPSCPPGPR
FT                   PFVV"
FT   CDS             489. .1235
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ADA67949.1"
FT                   /translation="MSGALKRKRSDEVAWSRRKPVKKPARRPPPPRAAPSVRRGLPSLQ
FT                   IQTLVAAGDTMITVPSGGICSLIGTYARGSGEGERHTNETLTYKVALDYHFVATAAACK
FT                   YSSIGIGVCWLVYDAQPTGTAPTVQDIFPHPATLSAFPYTWKVGREVCHRFVVKRRWCF
FT                   TMETNGRIGSDTPPSNVAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKDGAIKKGGFYI
FT                   VIAPGNGLEFTCHGQCRLYFKSVGNQ"
FT   CDS             complement(1602. .2588)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /protein_id="ADA67950.1"
FT                   /translation="MSTEGSTSLTVTPTGRHTIRSFRHRNVNTFLTYSKCPLEPEFIGE
FT                   HLFRLTKDYEPAYILVVRETHTDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAK
FT                   STDKVRDYILKDPKDKWEKGTYIPRKKSFSPPGKDSSEKKPSKDEVMREIMTHATSREE
FT                   YLSLVQSSLPYDWATKLSYFEYSASRLFPDIAETFTSPHPTSDPDLLCNETLQDWLEPN
FT                   IYQVSPKAYMLLEPSCLSLEQAKADLDWLAETTRLLREQERQASTSSAQHGQVKHPGLE
FT                   ASDDTTTGRTMSTGLHMMKKLSTMSLTTFPSSSVRAGSSSSAVKRTT"
XX
SQ   Sequence 2724 BP; 544 A; 732 C; 735 G; 713 T; 0 other;

gq415390 Length: 2724  23-DEC-2009  Type: N  Check: 4959  ..

       1  taatattacc gctcacaccc catgcgagcc gcggctctgt gcggcgagcg
      51  gtcctcggat gttctacccc cggtgcgatt tctttagctg cgtgttcttt
     101  agcagctgcc cccactgtcc tataagatgc tccctcggtg cgatccgcat
     151  catggatgct agcagccagt actctgcttt gccgtatcct cagccacccc
     201  gggtaccctc tgcagctccg tccgccggag gtctgccgtg gagtcgcgtc
     251  ggtgagatag ctatcttcac ctttgtttca gtgctagctc tttacttgct
     301  ttggctttgg gtcctcagag atcttatctt gcttctgaag gctcagcgag
     351  gtgtatccac ggaggagctg atctttggtc ctggtgagag gccagccgtc
     401  gccgctgccg acggttctcg tcctgtttcg gatccgtcgc cgtcctgtcc
     451  accgggacct agacctttcg tggtctagag cactcatcat gtctggtgct
     501  ttgaagcgca agcgttccga cgaggttgcc tggagtcgaa ggaagcccgt
     551  gaagaagcct gcccgccggc ccccaccgcc gcgggctgct ccctctgtca
     601  ggaggggtct cccttccctg cagattcaga ctttagtggc tgccggtgac
     651  actatgatca ctgtgccgtc cggaggcatc tgcagtctga ttggcacgta
     701  tgcccggggc tccggtgagg gtgaacgcca caccaacgag actctgacgt
     751  acaaggtcgc tctggactac cacttcgttg ccaccgctgc tgcgtgtaaa
     801  tacagcagta ttggcattgg agtttgctgg ttggtgtacg atgcgcagcc
     851  taccggcact gccccgaccg tccaagacat ttttccacac ccggctactc
     901  tctcagcatt tccctacacc tggaaggtgg ggagggaggt ctgccatcgc
     951  ttcgttgtta aacggcgctg gtgctttacc atggagacta acggccggat
    1001  cggttcggat acccccccgt ccaacgtggc ttggccaccc tgcaagaagg
    1051  acatctactt ccacaagttc tgcacgggct tgggcgtgaa gacggagtgg
    1101  aagaacgtta cagacgggaa ggacggcgcc atcaagaagg gcggcttcta
    1151  catagtcatt gcgcccggca acggcctcga gttcacgtgt cacggccagt
    1201  gccgtctgta ctttaagtca gttgggaatc agtgattccc acataatttt
    1251  aataaaacaa gttttattca ttcagaacga agttcgtaca ttacatagtc
    1301  tgcagatttg cagacgaaaa cacacacata gtgcagcctc gggctaaaga
    1351  ccgagtctca aacgacccaa cttaaaaaca aatcaaaaca aacatgatat
    1401  tattaaacct gcagccgccg gcttaagcag gagtgtacca cttctctcct
    1451  gcttgcatta cgtagatctc gcagtttgcg tagaagtact cgtactgggc
    1501  cggtgtcagt tccttcagcc agtcctcatc ctcgttggcg aggattattg
    1551  taggtatgcc cttcttggcg aacctgcgtc ttttcccgta cttgggattg
    1601  actatgtagt ccgtttgaca gccgacgagc tgcttccagc acggacagaa
    1651  cttgaaggga atgtcgtcaa tgacattgta gagagcttct tcatcatatg
    1701  aagaccagtc gacattgttc tgccagtagt tgtgtcgtcc gaggcttcta
    1751  gcccaggatg ttttacctgt ccgtgttggg ccgacgatgt agaggcttgt
    1801  ctttcttgct cccggagtaa tctagttgtt tcagccagcc agtctaagtc
    1851  agcttttgct tgctctaggc ttaagcagct aggttcgaga agcatgtatg
    1901  ctttaggact gacctggtag atgttcggct caagccagtc ctggagagtt
    1951  tcgttgcaga ggaggtctgg gtcagaagtc ggatgagggc tagtgaaggt
    2001  ctctgcaatg tccgggaaga ggcgactagc tgagtactca aagtatgaca
    2051  gtttagtagc ccagtcatac ggcaggctgc tctgaaccag agaaaggtac
    2101  tcttctctgc tagtagcatg tgtcatgatc tctctcatga cttcatcctt
    2151  gctaggcttc ttctcagaac tatccttacc tggtggactg aaggacttct
    2201  tccttggaat gtatgtacct ttctcccact tgtccttggg gtccttcagt
    2251  atgtagtcac gcaccttgtc agtgctcttg gcgctctgta tgttgggatg
    2301  gtaccgatct atgtcaaagt acctctcgtc ccgagtagtg acaggcttga
    2351  tgcactggag aagagcatgg cagtgccatg ttccgtctgt gtgtgtctct
    2401  ctgactacta gtatgtaggc tggctcatag tccttagtga gcctgaagag
    2451  atgctcaccg atgaactccg gttctagagg acacttgctg tatgtgagga
    2501  aggtgttaac gttccggtgc ctaaagctcc ggatcgtgtg cctgcctgtg
    2551  ggtgtcacag tgagggaggt tgatccttcg gtcgacatta gcgctagagg
    2601  tgggcaatct caggctctcc tcaactctac ccctagacag ctgcgaaata
    2651  atccgcccac cccccgtccc cttttatagt tgcttggtgg gctgggccgg
    2701  caggcccatg gggtgtgagc agca