Sequence of DPV Panicum streak virus
Panicum streak virus isolate G_YT_Com_g383, complete genome.
ACC No: GQ415394
Dated: 2009-12-23 | Length: 2736 | CRC: 1608324014
ID GQ415394; SV 1; circular; genomic DNA; STD; VRL; 2736 BP.
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AC GQ415394;
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DT 23-DEC-2009 (Rel. 103, Created)
DT 23-DEC-2009 (Rel. 103, Last updated, Version 1)
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DE Panicum streak virus isolate G_YT_Com_g383, complete genome.
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KW .
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OS Panicum streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2736
RX PUBMED; 19903330.
RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K.,
RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W.,
RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.;
RT "Comparative analysis of Panicum streak virus and Maize streak virus
RT diversity, recombination patterns and phylogeography";
RL Virol. J. 6:194-194(2009).
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RN [2]
RP 1-2736
RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K.,
RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W.,
RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N.,
RA Martin D.P.;
RT ;
RL Submitted (25-JUL-2009) to the EMBL/GenBank/DDBJ databases.
RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town,
RL WP 7701, South Africa
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FH Key Location/Qualifiers
FH
FT source 1. .2736
FT /organism="Panicum streak virus"
FT /host="Panicum maximum"
FT /isolate="G_YT_Com_g383"
FT /mol_type="genomic DNA"
FT /country="Mayotte"
FT /lat_lon="12.78 S 45.13 E"
FT /collection_date="2008"
FT /db_xref="taxon:10826"
FT CDS 153. .479
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ADA67960.1"
FT /translation="MDAQSSYSSLPYPSAPRVPSAAPSAGGLPWSRVGETVIFTFVSVL
FT ALYLLWLWVLKDCILLLKAQRGRSTEELTFGPGESSVVVPADGSRPVADPSPSCPPGPR
FT PFVV"
FT CDS 490. .1239
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ADA67961.1"
FT /translation="MSGALKRKRSDEVAWSRRKPVKKPARRPPPPPRAGSSSKRTLPAL
FT QIQTLVAAGDTMITVPSGGICSLIGTYARGSGEGERHTNETLTYKVALDYHFVATAAAC
FT KYSSIGIGVCWLVYDAQPTGTAPTVQDIFPHPDTLSAFPYTWKVGREVCHRFVVKRRWC
FT FTMSTNGRIGSDVPPSNTAWPPCKKDLYFHKFCTGLGVKTEWKNVTDGKDGAIKKGGLY
FT IVIAPGNGLEFTVHGQCRLYFKSVGNQ"
FT CDS complement(1630. .2595)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="ADA67962.1"
FT /translation="MSTEGSTSLNVTATGRHTIRSFRHRNVNTFLTYSKCPLEPEFIGE
FT HLFRLSKDYEPAYILVVRETHLDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAK
FT STDKVRDYILKNPKDKWEKGTYIPRKKSFVPPGKDSSEKKPSKDEVMREIMTHATSKEE
FT YLSLVQASLPYDWATKLSYFEYSASRLFPDIAESYTNPHPPTELDLHCNETIRDWLEPN
FT IYQVSPKAYMLLEPSCLSLEQAKADLEWLSETTRMLQEQENAASTSSAQHGPAKLPGPE
FT ASGDTTTGRTISTGLHMMKKLSTMSLTTFPSSSARAGSSS"
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SQ Sequence 2736 BP; 547 A; 722 C; 762 G; 705 T; 0 other;
gq415394 Length: 2736 23-DEC-2009 Type: N Check: 1764 ..
1 taatattacc cgctcacacc ccatgcgagc cgcggctctg tgcggcgagc
51 ggtccccgtt ggtcctaccc cggtgtgatt tcttcggctg cgggaccttt
101 tgcagttgcc cccactatcc tataagttgt gccctcggtg cgattccgca
151 tcatggatgc tcaaagcagc tactcatctt tgccctatcc gtctgccccg
201 cgggtaccct ctgcagctcc gtccgccgga ggcttgccgt ggagtcgcgt
251 cggtgagaca gtcatcttta cctttgtttc agtgttagcg ctttacttgc
301 tttggttgtg ggtgctcaaa gattgtatct tgcttctgaa ggctcagcga
351 ggtagatcca cggaggagct cacctttggt cctggtgaga gttcagtcgt
401 cgtccctgcc gacggttctc gtcccgttgc agatccgtcg ccgtcctgtc
451 caccgggacc taggcccttt gtggtctaga gcactcagca tgtcgggggc
501 tttgaagcgt aagcgttcgg atgaggttgc ctggagtcga aggaagcccg
551 tgaagaagcc tgcccggagg cccccaccac ctccccgggc tggctcgtcc
601 tccaagagga cactccctgc ccttcagata cagaccttag tggctgccgg
651 tgacactatg atcactgtgc cgtccggagg catctgcagt ctgattggca
701 cgtatgcccg ggggtccggt gagggtgaac gccacaccaa cgagactctg
751 acgtacaagg ttgccctgga ctaccatttt gtagctaccg ccgctgcgtg
801 taaatacagc agcatcggga tcggagtgtg ctggttggtg tacgatgccc
851 agcctaccgg cactgccccg accgtccaag atatatttcc gcacccggac
901 actctgtccg ctttcccgta tacctggaag gtggggaggg aggtctgcca
951 tcgcttcgtc gttaagagga ggtggtgctt caccatgtcc accaatggca
1001 ggatcgggtc tgacgtccct ccgtccaaca cagcttggcc cccatgtaag
1051 aaggacctgt acttccacaa gttctgcacg ggattaggag tgaagacgga
1101 gtggaagaac gtcacagacg ggaaggacgg cgccatcaag aagggcggct
1151 tgtacatagt cattgcaccg ggcaatggcc tcgagtttac ggttcacggc
1201 cagtgccgtc tgtacttcaa gtcagttggg aatcagtgat tcccacataa
1251 atataataaa aataatttta ttcattcaga acggagttct tacattacat
1301 agtcggcaga ttagccgacg aaaaaacaca cacatagtgc agcctcgggc
1351 taaagaccga gtctcaaacg accccaaatt aaaacaaatc agaacaagca
1401 tgatattatt aaaactgcag ccgccggctt cattctgtct ggaagaattt
1451 ctctccagac agcagtgtgt actggtcgca gttcgcctcg aagtagctct
1501 gctgcgccgg agtcatgtcc ctcagccagt cctcatcttc gttggcgagg
1551 atgattgtgg ggatactctt ccgggccacc ttccgtcgct tcccgtactt
1601 cggattgact atgtagtcgg tttgacagcc tacgagctgc ttccagcacg
1651 ggcagaactt gaagggaatg tcgtcaacga cattgtagag agcttcttca
1701 tcatatgaag accagtcgat attgttctgc cagtagttgt gtctcccgag
1751 gcttcgggcc caggtagttt tgccggtccg tgttgggccg acgatgtaga
1801 ggctgcgttt tcttgttcct ggagcattct ggttgtttca gacaaccatt
1851 ctaagtcagc cttggcctgc tctaggctta agcagctagg ttctaagagc
1901 atgtatgctt tgggactgac ctggtatatg ttcggctcca gccagtcccg
1951 gatagtctca ttgcagtgga ggtcgagttc ggttggagga tgaggattgg
2001 tgtaggactc tgcaatgtct gggaagaggc gactagctga gtactcaaag
2051 taagacagtt tcgttgccca gtcgtaaggt agcgatgcct ggactagaga
2101 aaggtactct tccttgctgg tggcatgtgt catgatctct ctcatgactt
2151 catccttgct aggcttcttc tcagaggagt ccttacctgg agggacgaag
2201 ctcttcttcc ttgggatgta tgtgcctttc tcccacttgt ccttggggtt
2251 cttcagtatg tagtcacgca ccttgtcagt gctcttggcg ctttgtatgt
2301 tcggatggta ccgatcgatg tcaaagtacc tctcgtcacg agtagtgacg
2351 ggtttgatgc actggagcag agcatggcag tgccatgtcc cgtctaagtg
2401 tgtctctcgg actactaaga tgtatgctgg ttcgtagtcc ttactgagcc
2451 tgaagagatg ctcaccgatg aactctggtt ctagaggaca cttgctgtat
2501 gtgaggaagg tgttaacgtt ccggtgccta aagctccgga tcgtgtgcct
2551 gccagtggct gtgacattga gggaggttga tccttcggtc gacattagcg
2601 ctagaggtgg gcagattctc aggctgctct caactctact cctagacacc
2651 gctgcgaaat aatccgccca ccccccgtgg cttttatagt tgcttaagtg
2701 ggctgggccg gccggcccat ggggtgtgag cagcga