Sequence of DPV Citrus tristeza virus

Citrus tristeza virus isolate CCTEA96112 clone 1 major coat protein (CP) gene, partial cds.

ACC No: GQ424360

Dated: 2009-09-13 | Length: 670 | CRC: 1061847326

                
ID   GQ424360; SV 1; linear; genomic RNA; STD; VRL; 670 BP.
XX
AC   GQ424360;
XX
DT   13-SEP-2009 (Rel. 102, Created)
DT   13-SEP-2009 (Rel. 102, Last updated, Version 1)
XX
DE   Citrus tristeza virus isolate CCTEA96112 clone 1 major coat protein (CP)
DE   gene, partial cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
XX
RN   [1]
RP   1-670
RA   Saponari M., Yokomi R.K.;
RT   "Genetic diversity of Citrus tristeza virus isolates collected recently in
RT   California";
RL   Unpublished.
XX
RN   [2]
RP   1-670
RA   Saponari M., Yokomi R.K.;
RT   ;
RL   Submitted (28-JUL-2009) to the EMBL/GenBank/DDBJ databases.
RL   ARS-USDA, San Joaquin Valley Agricultural Sciences Center, 9611 S.
RL   Riverbend, Parlier, CA 93648, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .670
FT                   /organism="Citrus tristeza virus"
FT                   /isolate="CCTEA96112"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Central California"
FT                   /clone="1"
FT                   /db_xref="taxon:12162"
FT   gene            1. .>670
FT                   /gene="CP"
FT   CDS             1. .>670
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="major coat protein"
FT                   /note="P25"
FT                   /protein_id="ACV53865.1"
FT                   /translation="MDDETKKLKNKNKETKEGDNVVAAESSFGSVNLHIDPTLITMNDV
FT                   RQLSTQQNAALNRDLFLALKGKYPNLPDEDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT
FT                   YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLXKFNT
FT                   R"
XX
SQ   Sequence 670 BP; 195 A; 122 C; 169 G; 182 T; 2 other;

gq424360 Length: 670  13-SEP-2009  Type: N  Check: 8042  ..

       1  atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga
      51  aggcgacaat gttgttgctg ctgagtcttc tttcggttcc gtaaacttac
     101  acatcgatcc gactctgata acgatgaacg atgtgcgtca gttgagtact
     151  caacagaatg ctgctttgaa cagggactta tttcttgctc tgaaagggaa
     201  gtatcctaac ttgcctgacg aagataagga ctttcacata gctatgatgt
     251  tataccgttt agcggttaag agttcatcat tgcagagtga tgatgacacc
     301  acgggcataa cgtacactcg ggagggtgtt gaagtagatt tgtctgacaa
     351  actttggacc gacatcgtgt ataattctaa gggtattggt aaccgaacta
     401  acgcccttcg agtctggggt agaactaacg atgctcttta cttagccttt
     451  tgtagacaga accgcaattt gagttatggc ggacgtccgc tagatgcagg
     501  gattccggct gggtatcatt atttgtgtgc agatttcttg accggagctg
     551  gcttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaattg
     601  ttgaaaaagc gaggggctga tgaggttgta gttactaatg tcaggcagct
     651  ngngaaattc aacacacgtt