Sequence of DPV Pepino mosaic virus

Pepino mosaic virus isolate Al 2-01 RNA dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein (CP) genes, complete cds.

ACC No: GQ438737

Dated: 2010-08-26 | Length: 2416 | CRC: 486630255

                
ID   GQ438737; SV 1; linear; genomic RNA; STD; VRL; 2416 BP.
XX
AC   GQ438737;
XX
DT   26-AUG-2010 (Rel. 105, Created)
DT   26-AUG-2010 (Rel. 105, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate Al 2-01 RNA dependent RNA polymerase (RdRp)
DE   gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene
DE   block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat
DE   protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2416
RA   Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.;
RT   "Pepino mosaic virus and Olpidium virulentus: agents associated with the
RT   occurrence of tomato collapse";
RL   Unpublished.
XX
RN   [2]
RP   1-2416
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (31-JUL-2009) to the EMBL/GenBank/DDBJ databases.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2416
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="Al 2-01"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2001"
FT                   /db_xref="taxon:112229"
FT   gene            <1. .468
FT                   /gene="RdRp"
FT   CDS             <1. .468
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /protein_id="ADL63123.1"
FT                   /translation="ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKL
FT                   KLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAID
FT                   MKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT   gene            494. .1198
FT                   /gene="TGBp1"
FT   CDS             494. .1198
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /protein_id="ADL63124.1"
FT                   /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC
FT                   TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT                   SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT                   LTIGELNARSNS"
FT   gene            1179. .1550
FT                   /gene="TGBp2"
FT   CDS             1179. .1550
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /protein_id="ADL63125.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT                   SCYNTHSATNNTQPLSGHH"
FT   gene            1402. .1656
FT                   /gene="TGBp3"
FT   CDS             1402. .1656
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /protein_id="ADL63126.1"
FT                   /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT                   QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT   gene            1695. .2408
FT                   /gene="CP"
FT   CDS             1695. .2408
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /protein_id="ADL63127.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2416 BP; 727 A; 587 C; 443 G; 659 T; 0 other;

gq438737 Length: 2416  26-AUG-2010  Type: N  Check: 2747  ..

       1  gaatgttcaa tagcatatac tgctacaaga taccatcttg attctacagt
      51  caagcaggtt tatgctggag atgatatggc attagatgga gttgtccaag
     101  aaaaaccctc ttttaaaaaa ctacagaaca agcttaaact cacctcaaag
     151  acactatttc caaaacaggt taaaggtgat tatgctgaat tctgtggttg
     201  gactttcact cctggtggta tcattaaaaa ccctttgaaa atgcatgctt
     251  ccattatgtt gcaagaggca atcggcaatt tacacactgc tgccagatca
     301  tatgccattg acatgaagca ttcataccaa atgggtgatg agctgcacaa
     351  ttacttaaca ccagatgaag ctgaacaaca cttccttgct gttcggaagt
     401  tgcacaagtt acaccaagga gaagcaatga gacttggtga aaagagccct
     451  ccaaaagcaa cacattgagg ggttaagttt ttcccagttc gaaatggaaa
     501  gatcaactct gattaattta cttcaattgc accacttcga gccaaaactc
     551  agtgttgaag gaatcatagt tgtgcacgga attgcaggca ctgggaaaac
     601  cactttactt aggactttat tttctgctta ccctagctta gttataggtt
     651  cacctaggcc ttgctattta gataaacaaa acaaaatttc acaagtttgc
     701  ttatcttgct ttcccaatac ccattgtgat attgtcgatg agtatcattt
     751  gctagaaagt tttctagaac caaaattggc tatctttggt gacccctgtc
     801  aatgcacata cattgagaga cttagagtcc cacattacac ttccttcaga
     851  actcatagat ttggaaagtc aactgctgag attttgaaca aactgtttga
     901  ccttaatata gtctcagtta agaaagaaga cgacatcgtt gaattcttta
     951  acccttttga agttgacccc actgagcata tctctgcctc tgaagaagaa
    1001  gtcttggact ttgtttctga ccaagtggtg accactagct cagaggaact
    1051  agccggactt gagtttgcag aaacaacttt ctactgcaca acattggccg
    1101  cagctgttgc tgaaaatcct gctaagactt tcatctctct gactagacac
    1151  acccacaaac tcaccattgg ggaactaaat gccaggtcta actcctagag
    1201  ctgacctcac tgacacatac aaaatcatcg ccattgcttt cttgttgtca
    1251  gcttgcattt acttccaaaa tagccactac caacctgttg ctggagacaa
    1301  cttgcaccgt ttgccttttg gtggccaata tcaagacggc accaaaaaga
    1351  tatcttattt tccacaacag cagtcatact ttcattctgg aaacaaatta
    1401  aatgtcctca tacttatctt cattctcaca ttgggtattg tcctcaccaa
    1451  taaatttagt tttagcttta gtcgtactac tcaccagcat tcttgctata
    1501  acacacattc agcaaccaac aatacacaac cattgtcagg tcatcattga
    1551  cggtgctgca atagtcataa caaattgtga gaacacacca gaagtgctta
    1601  aagcaatcaa cttctcccct tggaacgggt taagttttcc taaatttgaa
    1651  aattaatatt gagtgttcac aaaaatcaac ttcaataaac aatcatgcct
    1701  gacacaacac ctgttgctgc cacttcaagt gcaccaccca cagccaaaga
    1751  tgctggtgcc aaagctcctt ctgacttctc aaatcccaat acagctccta
    1801  gtctcagtga tttgaagaaa gtcaagtatg tctccaccgt gacctccgtg
    1851  gccacaccag ctgaaattga agccctaggc aaaatcttca ccgctatggg
    1901  ccttgccgcc aatgagactg gtccggccat gtgggatcta gctcgtgcat
    1951  atgctgatgt gcagagttct aaatcggcac agctgattgg agctacccct
    2001  tccaaccctg cactatcacg ccgagccctt gctgctcagt ttgatcgaat
    2051  caatataacc cccaggcaat tttgcatgta ctttgccaaa gttgtttgga
    2101  acatacttct cgacagcaac attccaccag caaattgggc caaacttggt
    2151  taccaagaag ataccaaatt tgctgcattt gacttcttcg atggagtcac
    2201  caaccctgcc agcctgcagc ctgctgatgg tcttatcagg cagccaaatg
    2251  agaaagaact agctgctcac tccgtagcta agtacggcgc cttggctagg
    2301  caaaagatct ccacaggtaa ttatattacc acacttggag aagtcacacg
    2351  tggacacatg ggaggagcta acaccatgta cgcgatagac gcaccccctg
    2401  aactttaaac actcga