Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate Al 2-01 RNA dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein (CP) genes, complete cds.
ACC No: GQ438737
Dated: 2010-08-26 | Length: 2416 | CRC: 486630255
ID GQ438737; SV 1; linear; genomic RNA; STD; VRL; 2416 BP. XX AC GQ438737; XX DT 26-AUG-2010 (Rel. 105, Created) DT 26-AUG-2010 (Rel. 105, Last updated, Version 1) XX DE Pepino mosaic virus isolate Al 2-01 RNA dependent RNA polymerase (RdRp) DE gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene DE block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat DE protein (CP) genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; OC Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-2416 RA Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.; RT "Pepino mosaic virus and Olpidium virulentus: agents associated with the RT occurrence of tomato collapse"; RL Unpublished. XX RN [2] RP 1-2416 RA Cordoba-Selles M.C.; RT ; RL Submitted (31-JUL-2009) to the EMBL/GenBank/DDBJ databases. RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain XX FH Key Location/Qualifiers FH FT source 1. .2416 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="Al 2-01" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="2001" FT /db_xref="taxon:112229" FT gene <1. .468 FT /gene="RdRp" FT CDS <1. .468 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA dependent RNA polymerase" FT /note="ORF1" FT /protein_id="ADL63123.1" FT /translation="ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKL FT KLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAID FT MKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH" FT gene 494. .1198 FT /gene="TGBp1" FT CDS 494. .1198 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /note="ORF2" FT /protein_id="ADL63124.1" FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK FT LTIGELNARSNS" FT gene 1179. .1550 FT /gene="TGBp2" FT CDS 1179. .1550 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /note="ORF3" FT /protein_id="ADL63125.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSATNNTQPLSGHH" FT gene 1402. .1656 FT /gene="TGBp3" FT CDS 1402. .1656 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /note="ORF4" FT /protein_id="ADL63126.1" FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN" FT gene 1695. .2408 FT /gene="CP" FT CDS 1695. .2408 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="ORF5" FT /protein_id="ADL63127.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 2416 BP; 727 A; 587 C; 443 G; 659 T; 0 other; gq438737 Length: 2416 26-AUG-2010 Type: N Check: 2747 .. 1 gaatgttcaa tagcatatac tgctacaaga taccatcttg attctacagt 51 caagcaggtt tatgctggag atgatatggc attagatgga gttgtccaag 101 aaaaaccctc ttttaaaaaa ctacagaaca agcttaaact cacctcaaag 151 acactatttc caaaacaggt taaaggtgat tatgctgaat tctgtggttg 201 gactttcact cctggtggta tcattaaaaa ccctttgaaa atgcatgctt 251 ccattatgtt gcaagaggca atcggcaatt tacacactgc tgccagatca 301 tatgccattg acatgaagca ttcataccaa atgggtgatg agctgcacaa 351 ttacttaaca ccagatgaag ctgaacaaca cttccttgct gttcggaagt 401 tgcacaagtt acaccaagga gaagcaatga gacttggtga aaagagccct 451 ccaaaagcaa cacattgagg ggttaagttt ttcccagttc gaaatggaaa 501 gatcaactct gattaattta cttcaattgc accacttcga gccaaaactc 551 agtgttgaag gaatcatagt tgtgcacgga attgcaggca ctgggaaaac 601 cactttactt aggactttat tttctgctta ccctagctta gttataggtt 651 cacctaggcc ttgctattta gataaacaaa acaaaatttc acaagtttgc 701 ttatcttgct ttcccaatac ccattgtgat attgtcgatg agtatcattt 751 gctagaaagt tttctagaac caaaattggc tatctttggt gacccctgtc 801 aatgcacata cattgagaga cttagagtcc cacattacac ttccttcaga 851 actcatagat ttggaaagtc aactgctgag attttgaaca aactgtttga 901 ccttaatata gtctcagtta agaaagaaga cgacatcgtt gaattcttta 951 acccttttga agttgacccc actgagcata tctctgcctc tgaagaagaa 1001 gtcttggact ttgtttctga ccaagtggtg accactagct cagaggaact 1051 agccggactt gagtttgcag aaacaacttt ctactgcaca acattggccg 1101 cagctgttgc tgaaaatcct gctaagactt tcatctctct gactagacac 1151 acccacaaac tcaccattgg ggaactaaat gccaggtcta actcctagag 1201 ctgacctcac tgacacatac aaaatcatcg ccattgcttt cttgttgtca 1251 gcttgcattt acttccaaaa tagccactac caacctgttg ctggagacaa 1301 cttgcaccgt ttgccttttg gtggccaata tcaagacggc accaaaaaga 1351 tatcttattt tccacaacag cagtcatact ttcattctgg aaacaaatta 1401 aatgtcctca tacttatctt cattctcaca ttgggtattg tcctcaccaa 1451 taaatttagt tttagcttta gtcgtactac tcaccagcat tcttgctata 1501 acacacattc agcaaccaac aatacacaac cattgtcagg tcatcattga 1551 cggtgctgca atagtcataa caaattgtga gaacacacca gaagtgctta 1601 aagcaatcaa cttctcccct tggaacgggt taagttttcc taaatttgaa 1651 aattaatatt gagtgttcac aaaaatcaac ttcaataaac aatcatgcct 1701 gacacaacac ctgttgctgc cacttcaagt gcaccaccca cagccaaaga 1751 tgctggtgcc aaagctcctt ctgacttctc aaatcccaat acagctccta 1801 gtctcagtga tttgaagaaa gtcaagtatg tctccaccgt gacctccgtg 1851 gccacaccag ctgaaattga agccctaggc aaaatcttca ccgctatggg 1901 ccttgccgcc aatgagactg gtccggccat gtgggatcta gctcgtgcat 1951 atgctgatgt gcagagttct aaatcggcac agctgattgg agctacccct 2001 tccaaccctg cactatcacg ccgagccctt gctgctcagt ttgatcgaat 2051 caatataacc cccaggcaat tttgcatgta ctttgccaaa gttgtttgga 2101 acatacttct cgacagcaac attccaccag caaattgggc caaacttggt 2151 taccaagaag ataccaaatt tgctgcattt gacttcttcg atggagtcac 2201 caaccctgcc agcctgcagc ctgctgatgg tcttatcagg cagccaaatg 2251 agaaagaact agctgctcac tccgtagcta agtacggcgc cttggctagg 2301 caaaagatct ccacaggtaa ttatattacc acacttggag aagtcacacg 2351 tggacacatg ggaggagcta acaccatgta cgcgatagac gcaccccctg 2401 aactttaaac actcga