Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate K16 coat protein gene, complete cds.
ACC No: GQ475547
Dated: 2012-08-02 | Length: 672 | CRC: -512888808
ID GQ475547; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC GQ475547; XX DT 19-OCT-2009 (Rel. 102, Created) DT 02-AUG-2012 (Rel. 113, Last updated, Version 3) XX DE Citrus tristeza virus isolate K16 coat protein gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RX PUBMED; 22562224. RA Biswas K.K., Tarafdar A., Diwedi S., Lee R.F.; RT "Distribution, genetic diversity and recombination analysis of Citrus RT tristeza virus of India"; RL Virus Genes 45(1):139-148(2012). XX RN [2] RP 1-672 RA Biswas K.K., Tarafdar A., Kumari S.; RT "Molecular variability in CTV isolates from Darjeeling Hills of RT Northeastern Himalayan region of India"; RL Unpublished. XX RN [3] RP 1-672 RA Biswas K.K., Kumari S., Tarafdar A.; RT ; RL Submitted (01-AUG-2009) to the INSDC. RL Division of Plant Pathology, Indian Agricultural Research Institute, New RL Delhi, Delhi 110012, India XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /host="Citrus reticulata" FT /isolate="K16" FT /mol_type="genomic RNA" FT /country="India:Darjeeling Hills of West Bengal" FT /collected_by="Kajal K Biswas" FT /collection_date="2007" FT /identified_by="Kajal K Biswas" FT /db_xref="taxon:12162" FT CDS 1. .672 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D0EDH1" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:D0EDH1" FT /protein_id="ACX55597.1" FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSMNLHIDPTLIAMNDV FT RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT FT YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAAYIQAKEQLLKKRGADGVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 191 A; 125 C; 177 G; 179 T; 0 other; gq475547 Length: 672 02-AUG-2012 Type: N Check: 2699 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg agacgaaaga 51 aggcgacgat gttgttgcag cagagtcttc tttcggttcc atgaacttac 101 acatcgatcc gactctgata gcgatgaacg atgtgcgtca gttgggaacc 151 caacagaacg ccgctttgaa cagagatttg tttcttactc tgaaagggaa 201 gtatcctaac ttgcctgaca aggataagga cttccacata gctatgatgt 251 tatatcgttt agcggttaag agttcatcgt tgcaaagtga tgatgacacc 301 acgggcataa catatactcg ggagggtgtt gaagtggatt tgtctgacaa 351 gctttggacc gacgtcgtgt ttaactccaa gggtattggt aaccgtacta 401 atgcccttcg agtctggggt aggactaacg atgcccttta tttagctttc 451 tgtagacaga atcgcaattt gagttatggt ggacgtccgc tagatgcagg 501 gattccggct ggatatcatt acctatgtgc agatttcttg accggagctg 551 gcttgactga tttagaatgt gctgcgtaca tacaagctaa ggaacaattg 601 ttgaagaagc gaggggctga tggagtcgta gttactaatg tcaggcagct 651 tgggaaattt aacacacgtt ga