Sequence of DPV Grapevine associated totivirus-2
Grapevine associated totivirus-2 isolate Ctg341 hypothetical protein gene, complete cds; and putative RNA-dependent RNA polymerase gene, partial cds.
ACC No: GU108594
Dated: 2011-01-28 | Length: 6595 | CRC: 1908600625
ID GU108594; SV 1; linear; genomic RNA; STD; VRL; 6595 BP. XX AC GU108594; XX DT 31-DEC-2010 (Rel. 107, Created) DT 28-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Grapevine associated totivirus-2 isolate Ctg341 hypothetical protein gene, DE complete cds; and putative RNA-dependent RNA polymerase gene, partial cds. XX KW GDS. XX OS Grapevine associated totivirus-2 OC Viruses; dsRNA viruses; Totiviridae; Totivirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-6595 RX PUBMED; 21140178. RA Al Rwahnih M., Daubert S., Urbez-Torres J.R., Cordero F., Rowhani A.; RT "Deep sequencing evidence from single grapevine plants reveals a virome RT dominated by mycoviruses"; RL Arch. Virol. 0:0-0(2010). XX RN [2] RP 1-6595 RA Al Rwahnih M., Rowhani A., Daubert S.; RT ; RL Submitted (15-OCT-2009) to the EMBL/GenBank/DDBJ databases. RL Department of Plant Pathology, University of California, Davis, One Shields RL Avenue, Davis, CA 95616, USA XX FH Key Location/Qualifiers FH FT source 1. .6595 FT /organism="Grapevine associated totivirus-2" FT /host="Vitis vinifera cv. Syrah" FT /isolate="Ctg341" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="10-Jun-2008" FT /db_xref="taxon:908837" FT CDS 766. .4707 FT /codon_start=1 FT /product="hypothetical protein" FT /protein_id="ADO60932.1" FT /translation="MMSSYGIKTVNQTATVAVDASAENGAQINRGSNLDSSFTAGVNYS FT GNLSSVSKADLLVHAQHSKNEQFSFVFLSRWQRFCTAIIAFFTSFVALFEREIYSVFLS FT PHLLILRSNIAQQTVSPALYNFPSRHTYHMLGYRWSCIPLLLYSYGFLSFSQAEHFRNI FT QKFSDLPLSLRMSILRHRRSAILVRVSFQHVENVLAPSTTGSYELLSLRILLNSEAAYF FT ATPYSTAESKPTMEFSTPSVPALGGARAVLTQLPTSARAAGLSKKWSPQMYPTQAVDQR FT VVFDVTARGIKSLRENNFVRSFPENLPQPRQPTHFSELLTSILAGRLSTSTAPAANTVA FT TQFNRSWQRQPIVDRTLAPQHAGLASVLEGIDYSKQSLAAAEQAVSINRFLDTRGNRII FT PRWEADQWNRWSGITSLYSLGQSDRSYLQIAYRLLARYYFALLAEELPEMTPLVTTVGT FT NTTLTGLTTLLAPPAPPVPGQPIPLPVNPEAALFTQAAFSGLKTGTAQLVDAEGLSEDE FT LIELLSAIVPVESANIPLLSTAANPPETFFPGPTRYTYDNKVNEVFIHFGNNAIPDLAQ FT LATEVHRIPHAAQILSVLRYLAMRHGAAQDIDDALEILMARVVLYTNSTQLRGLRNNAP FT VGEYINSDGHYEMHLPLAKTGSAYFDSFMVPHAMTGDLPAFASLPARSVINNGVLFAQA FT RAAALNWAAAAWSMSGRSWVNSPGRENNSYVRNHIDVFLRKYSSDILNLWTSNHNNALA FT FHVGWSLSATARSTEANVVVNWWNDYHSPTLTNAYLELWQVECLPSHQVLPWDDRETPS FT TVSWPSNTPFPIHDAYSFSSHLHVQVARDTPAEVGRTFMGDGGAIANAQHFAAIGSVNG FT FRFEDAANAPKISIARWRQRHAFQFPVAPASQAPVWMAEPGSPFADFLSPGSMNSHNVE FT ANVAYSYGLTTADDVTTLDRRYTAQLWFDAARQVPKRSLMVNYVSPFPDRREFSSLQDY FT SIIVWEKENAYAGMSLVPVDFSPVSIADYKPAANLTFPSLTRPSAVDTSDIAKNPRVAS FT SKRAPRAAASDILSRLKEFNSPAPTPPSPGLSQREPAAQLSYEAKYPVEESQVPADFRF FT YQPVVEEDRVHVEPADAPDAYDRLSKQQLKLAIENNMQLLAKIQNSPILGELDLDAERK FT RREDFQKVESARNERIQRRSSFVPFGPTRPRPVLTPRAPAAKRPQVHGKLPPSEVKHAP FT VEINDAAAEQVQRQIPQLGRPVSPRTITDPFAALKADKANPGTYYQKSSEDLAFDALGK FT EQLPQANFGHTGADVSVQDGIATDSLAKN" FT CDS 4755. .>6595 FT /codon_start=1 FT /product="putative RNA-dependent RNA polymerase" FT /protein_id="ADO60933.1" FT /translation="MLSAYELLSKHSQGAKRVVAGLTDSMSASTYKMSGTTYPGWDFSR FT LYSKYNLSTPPNSYEAAAVASVLLNPRPDALNLGISPIYATNDLYATPSPVKPGIGSAW FT LTDFSNTRLHELQRERFHQSDFIHPSLKDFCLFANYGESKTASCATRVLQLLGCAYPLV FT DSHHLALAKQSLRLGDPNKLGMEQPALANYLIAAWSPHSMVFDDSNAIEGVDEEVYARL FT HATFPLAPILVCLHDGHVTYAIRRKFLYAELTNYRAAYQNASPHLSAHEKELLTASYPK FT NIGRAGGRVHLTLEMLLKTPLEPAQRALLLGFLKHRNAGNDFEQVFITTVALVPFLEGP FT AGRDLTLFFLRNMPVICSLSTNQVAKWLKAAHAHARIFQCLPGLALPAITIQEIRMYGD FT LIYGLDSLVGRSELMKLDFTAELFMRTADPIRRAVPTLTRTSLGYELTLSEELYETYED FT RAINTTFREVLPEKLNLESFEAWYARRMFWGASGGAPGAKITWSDREGGDKLRLNKRGA FT LLAIPAMHFTKILERAVSPVLWSVKALKFEPGKLRSILNTSMEHYVMQAYLLDHFDANV FT NSGTWYAIANAGAARLAAHARRLESLRHSVGFMWDFA" XX SQ Sequence 6595 BP; 1633 A; 1677 C; 1496 G; 1789 T; 0 other; gu108594 Length: 6595 28-JAN-2011 Type: N Check: 1598 .. 1 ccagtgtagt agggggcagg aaagaacgaa gcacgtgctt atcggtttgg 51 ctcacccaac ttgggcgaaa tcgtagcgtg tggatactca aagtgtcaag 101 gtacagtcaa catgcaaaca cgactagtac cgaaaactcc cacaaacttt 151 gaggcctact acagagcgta caagtgctag ggtagaaaga gctggggcta 201 taacccccgg atctcttatc aggccagcac cgctcagccc ctctttttgt 251 gtaaatccca cccggtctag cggagtggga cgcatataaa atgagcgtgt 301 aacatcgctc aacccgtcca agcacatgac actaaactgt actcgcccag 351 gatatggcgt taaactgtac cgtccgcgtt tgccagcggt taaaacaacg 401 gcttttcatc acagccgcgt gcgagtccgc gggataataa atgttctaac 451 agactcgaaa agacatccta ttttcaagtt ctcgtcgcta cgttaaacgt 501 cggcatttct tggatctggt ggggtaacat acaagtcaag tatggtgtga 551 accggggcta cacaactacc gggaagctaa cgtaactgcg ctggtgctct 601 actttcaacg tgcttcagga ccgaaaccgt ccgtaaacca atgggttgca 651 cagaaagtaa aggcgtaggg aacgtgccta ggacaagaac taggtggaca 701 gactgacact catcagtgct ttctcgattg aaagcagtag caaacagtcg 751 gtgcgggaac tccgcatgat gtcttcttac gggatcaaga cggtaaacca 801 gactgctacg gtggcagtcg atgcatcagc cgaaaatggt gcacaaatta 851 accggggtag caacctagat agctcattca ccgctggtgt caactacagc 901 ggtaaccttt catctgtatc aaaagcagat ctccttgtgc atgctcagca 951 ctctaaaaat gagcaatttt cttttgtttt tctctctaga tggcagcgct 1001 tttgcactgc tatcattgca ttctttactt cttttgttgc gctctttgaa 1051 cgcgaaattt actctgtttt tctttctcca catttgctaa ttttgcgatc 1101 taacatagcg caacaaaccg tctcgcctgc actatacaat ttcccttctc 1151 ggcacacata tcatatgttg ggctatcgct ggagttgtat tccactgttg 1201 ttatattctt acggtttctt atcattctcg caagcggagc attttcgtaa 1251 catccaaaaa ttctctgact tgcccctttc tcttagaatg tcgatactaa 1301 ggcaccgtcg atctgccatt ctagtgcgcg ttagtttcca acacgttgaa 1351 aacgtgttag ctccgtccac tactgggtct tatgaattac ttagtctgcg 1401 aattcttttg aattcagagg ctgcgtactt cgcaacacct tactctacgg 1451 ctgaatctaa accaactatg gaattttcta ctccgtcggt tcccgccctc 1501 ggtggagcgc gagctgtttt aacgcagctc ccaacctccg ctagagcagc 1551 tgggttgagc aagaaatggt cgccgcaaat gtatcctacg caagcggttg 1601 accagcgtgt agtgtttgac gtgactgcta gaggtattaa gagtttgagg 1651 gaaaacaatt ttgtacgctc tttcccagaa aatttgcccc aaccgcgtca 1701 acccacacat ttctcggaac tgttaactag cattcttgct ggtcgacttt 1751 ctacttctac ggctcctgct gccaacacgg ttgccactca gtttaaccgc 1801 tcttggcaac gtcaaccaat tgttgatcga acactcgctc ctcagcatgc 1851 tggtctggcc agtgttctgg aaggtatcga ttattcgaaa cagtctttgg 1901 ctgcagctga acaagccgtt tcaatcaata ggttcttaga cactcggggt 1951 aaccgtatca ttcctagatg ggaagcagat caatggaata ggtggagtgg 2001 tattacttct ttgtattcac tcggccagtc ggatcgcagt taccttcaaa 2051 ttgcttaccg gttgttagct cggtactact ttgctctgtt ggcagaggaa 2101 ttacccgaaa tgactccatt agttacaact gttggtacta atacgacgct 2151 aactggcttg actactctac tcgctccccc tgctccgcca gttcctggtc 2201 agcccattcc actgccggtt aaccctgaag ctgccttgtt cactcaagcg 2251 gcattctcag gacttaaaac aggcacggca cagctggttg acgccgaagg 2301 tttgagcgag gatgaactca ttgaactctt atctgccata gtccctgtgg 2351 aaagtgccaa tatcccgtta ttgagcactg ctgcgaatcc accagaaacg 2401 tttttcccag gaccaactag atacacttat gataataagg tcaatgaggt 2451 atttatccac tttggcaata atgctattcc ggatctggcg caactcgcca 2501 ctgaagtcca tcggattccg catgctgcgc aaatcttgtc tgtcttacgt 2551 tacctcgcta tgcgtcatgg tgcagctcaa gatattgatg atgctttgga 2601 gattctaatg gcacgggtgg ttttatatac taattccact cagctacgtg 2651 gtcttcgcaa taacgcgccc gtcggagaat acattaattc agacggacac 2701 tacgaaatgc atctaccctt agctaaaacg ggttcggctt attttgactc 2751 ttttatggtc ccccatgcta tgactggcga tctacctgct ttcgctagcc 2801 tacctgctag gagtgttata aataatggag tcttattcgc ccaagcgcgc 2851 gctgctgcac tcaattgggc ggctgctgct tggagtatgt ctggtagatc 2901 ttgggtgaac tcgccagggc gtgaaaacaa ttcttatgtg cgtaatcaca 2951 ttgatgtctt cttgcgcaaa tactctagcg acattcttaa tctttggact 3001 tctaaccaca acaatgctct ggctttccac gtcgggtggt cactctccgc 3051 cactgcacgc agtacagaag caaatgttgt agttaactgg tggaatgact 3101 accattctcc tactctcacc aatgcttacc tcgaattatg gcaagttgaa 3151 tgcttgcctt cgcatcaagt actaccgtgg gatgatcgag aaacaccttc 3201 cactgtgtca tggccgtcga acactccgtt ccctatccat gatgcctatt 3251 cgttttcgtc acacttgcac gttcaagtcg cccgcgatac tccagctgaa 3301 gttggtcgta ccttcatggg cgacggtggt gctattgcga acgcgcagca 3351 ctttgctgcc attggttcag tgaatggttt cagattcgag gacgcggcta 3401 acgctcctaa gatatcaatc gctcgctgga ggcagcgcca cgctttccag 3451 ttccctgtcg cgccggcatc gcaagctcct gtttggatgg ctgagccggg 3501 tagtcctttc gcggatttcc tgtctccagg ctccatgaat tcacacaatg 3551 tggaagctaa cgttgcttat tcgtatggtt tgaccacggc cgatgacgtt 3601 acaactctag accgtcgcta cactgcccaa ttatggttcg atgcagcacg 3651 tcaagttccc aagcgttcgc taatggttaa ttacgtgtct cctttccctg 3701 accgtagaga gtttagttca ctacaagatt attcaatcat agtctgggaa 3751 aaagaaaatg cttatgccgg aatgtcacta gtccctgtag acttttcacc 3801 agttagtatc gccgattaca agccggcggc taacttgact ttcccgtcgc 3851 tcactcgtcc ttccgccgtc gatacgagtg atattgcgaa gaatccgcgt 3901 gtggctagtt ctaaacgggc tccacgcgct gctgcttctg atatcctatc 3951 gcggttaaag gaatttaact cccctgcacc cactccccct tctccagggc 4001 tttctcaacg agaaccggct gcgcaacttt cctacgaggc aaaatacccc 4051 gtcgaggaga gtcaagtccc agcggatttt cgattctacc aaccagtggt 4101 tgaggaggac cgagttcatg tagagccagc ggatgcccct gatgcttatg 4151 atcgcttatc taagcaacag ctcaaacttg ccatcgagaa caacatgcaa 4201 ctactagcta aaatccaaaa ttcgcctatt ttgggagaat tagacttaga 4251 tgcagagcgt aagcgccgtg aggattttca aaaggttgag tctgcgcgta 4301 atgagcggat acaacgccgg tctagttttg tgcctttcgg tccaacacga 4351 ccccgacctg tacttacccc gcgagcccct gccgctaaac gcccgcaagt 4401 ccacggtaaa ctcccaccct ctgaagtgaa gcatgctccc gtcgagatta 4451 atgatgctgc agccgagcaa gtccaacgcc aaattcccca attgggcaga 4501 cctgtttcgc ctcgcactat cacggatcct ttcgctgctc taaaagccga 4551 taaagccaac cccggtacat actatcagaa gtcatcggag gatcttgctt 4601 tcgacgcttt aggcaaagag caattaccac aagcaaactt tgggcatact 4651 ggcgcggacg ttagcgtgca ggatgggata gcaactgact cactagcgaa 4701 aaactagtgt ggaacgttgc ttactaccgt tctgcgcgca acgttcacgc 4751 cagtatgctg tcagcttatg agttgctttc taagcattct caaggagcca 4801 agagagtagt cgcaggcctt accgacagta tgtcggctag cacatataaa 4851 atgagcggta caacgtaccc cggctgggat ttttcacgct tatactctaa 4901 gtacaattta tctacaccgc caaattctta tgaagctgct gccgtagcca 4951 gtgtactgct taaccccaga ccggatgcgc tgaacttggg catttcccca 5001 atctatgcta ctaatgatct gtacgctact ccttcaccag ttaaaccggg 5051 tattggcagt gcatggttaa ctgactttag caacacgcgt ttgcacgagc 5101 tacaacggga acgtttccat caaagtgatt tcattcatcc tagcttaaaa 5151 gacttctgtt tgtttgcaaa ttatggggaa tcaaagacgg cctcctgtgc 5201 aactcgcgtg ctacagttgc tcggttgtgc ttatccttta gtggattcgc 5251 accatctagc actagctaaa caatctctac gactcggaga cccgaacaag 5301 ttaggtatgg agcaacccgc gctagcaaat tacttgatag cagcttggtc 5351 gccgcattca atggtttttg atgattcaaa tgcaattgaa ggtgttgacg 5401 aagaagtgta tgctcgatta cacgctactt ttccattggc tccgatatta 5451 gtgtgcttac acgatggcca cgttacatac gccattcgtc gtaagttcct 5501 ctacgcagag ctcactaatt accgagctgc ataccaaaac gccagtccac 5551 acttaagcgc gcacgaaaaa gagttactca ctgccagtta tccaaagaac 5601 attggccgtg caggtggtag agtacatcta acactcgaga tgttgctcaa 5651 aactcccttg gaacccgcgc aacgtgcctt gttgttaggg tttcttaaac 5701 acagaaatgc gggtaatgac tttgagcaag tgtttataac taccgtagct 5751 ttagtaccct tcctggaagg cccagctgga cgtgatttga cgttgttttt 5801 cttacgaaat atgccggtaa tatgttcact ctctacgaat caagtcgcaa 5851 aatggttgaa agccgcacat gcccatgctc gcatttttca atgtcttcct 5901 ggcttagcgt tacctgcaat taccattcaa gagatcagga tgtatggcga 5951 cttgatttac ggcttagact ctctagtcgg tcgctcagag ttgatgaagc 6001 tggatttcac ggctgaactc tttatgcgta ctgctgaccc tattagacgc 6051 gcggttccta cgctaactcg cacttcgcta ggttatgagt taactttgag 6101 tgaagaactt tatgagacat acgaggacag ggcaatcaat acaactttta 6151 gagaagtgct tcctgagaag ttaaacttag agagttttga agcttggtac 6201 gcacggcgta tgttctgggg tgcttcaggt ggtgctcccg gggctaaaat 6251 aacatggtct gatcgtgaag ggggagataa gctcagattg aataaacgag 6301 gagctctgct tgctatacca gccatgcatt ttacgaagat acttgagcgt 6351 gctgtttcac cagtactctg gtcagtcaaa gccttaaaat ttgaaccagg 6401 caaactgcgt tccatactca acaccagcat ggaacactac gttatgcagg 6451 catatttact agaccacttc gatgcaaatg ttaacagcgg tacttggtat 6501 gcgattgcta atgcaggtgc agctcgttta gccgcccacg cacgaaggct 6551 agaatcgtta aggcattcag ttggttttat gtgggatttt gctga