Sequence of DPV Grapevine associated totivirus-2
Grapevine associated totivirus-2 isolate Ctg341 hypothetical protein gene, complete cds; and putative RNA-dependent RNA polymerase gene, partial cds.
ACC No: GU108594
Dated: 2011-01-28 | Length: 6595 | CRC: 1908600625
ID GU108594; SV 1; linear; genomic RNA; STD; VRL; 6595 BP.
XX
AC GU108594;
XX
DT 31-DEC-2010 (Rel. 107, Created)
DT 28-JAN-2011 (Rel. 107, Last updated, Version 2)
XX
DE Grapevine associated totivirus-2 isolate Ctg341 hypothetical protein gene,
DE complete cds; and putative RNA-dependent RNA polymerase gene, partial cds.
XX
KW GDS.
XX
OS Grapevine associated totivirus-2
OC Viruses; dsRNA viruses; Totiviridae; Totivirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-6595
RX PUBMED; 21140178.
RA Al Rwahnih M., Daubert S., Urbez-Torres J.R., Cordero F., Rowhani A.;
RT "Deep sequencing evidence from single grapevine plants reveals a virome
RT dominated by mycoviruses";
RL Arch. Virol. 0:0-0(2010).
XX
RN [2]
RP 1-6595
RA Al Rwahnih M., Rowhani A., Daubert S.;
RT ;
RL Submitted (15-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Pathology, University of California, Davis, One Shields
RL Avenue, Davis, CA 95616, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6595
FT /organism="Grapevine associated totivirus-2"
FT /host="Vitis vinifera cv. Syrah"
FT /isolate="Ctg341"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="10-Jun-2008"
FT /db_xref="taxon:908837"
FT CDS 766. .4707
FT /codon_start=1
FT /product="hypothetical protein"
FT /protein_id="ADO60932.1"
FT /translation="MMSSYGIKTVNQTATVAVDASAENGAQINRGSNLDSSFTAGVNYS
FT GNLSSVSKADLLVHAQHSKNEQFSFVFLSRWQRFCTAIIAFFTSFVALFEREIYSVFLS
FT PHLLILRSNIAQQTVSPALYNFPSRHTYHMLGYRWSCIPLLLYSYGFLSFSQAEHFRNI
FT QKFSDLPLSLRMSILRHRRSAILVRVSFQHVENVLAPSTTGSYELLSLRILLNSEAAYF
FT ATPYSTAESKPTMEFSTPSVPALGGARAVLTQLPTSARAAGLSKKWSPQMYPTQAVDQR
FT VVFDVTARGIKSLRENNFVRSFPENLPQPRQPTHFSELLTSILAGRLSTSTAPAANTVA
FT TQFNRSWQRQPIVDRTLAPQHAGLASVLEGIDYSKQSLAAAEQAVSINRFLDTRGNRII
FT PRWEADQWNRWSGITSLYSLGQSDRSYLQIAYRLLARYYFALLAEELPEMTPLVTTVGT
FT NTTLTGLTTLLAPPAPPVPGQPIPLPVNPEAALFTQAAFSGLKTGTAQLVDAEGLSEDE
FT LIELLSAIVPVESANIPLLSTAANPPETFFPGPTRYTYDNKVNEVFIHFGNNAIPDLAQ
FT LATEVHRIPHAAQILSVLRYLAMRHGAAQDIDDALEILMARVVLYTNSTQLRGLRNNAP
FT VGEYINSDGHYEMHLPLAKTGSAYFDSFMVPHAMTGDLPAFASLPARSVINNGVLFAQA
FT RAAALNWAAAAWSMSGRSWVNSPGRENNSYVRNHIDVFLRKYSSDILNLWTSNHNNALA
FT FHVGWSLSATARSTEANVVVNWWNDYHSPTLTNAYLELWQVECLPSHQVLPWDDRETPS
FT TVSWPSNTPFPIHDAYSFSSHLHVQVARDTPAEVGRTFMGDGGAIANAQHFAAIGSVNG
FT FRFEDAANAPKISIARWRQRHAFQFPVAPASQAPVWMAEPGSPFADFLSPGSMNSHNVE
FT ANVAYSYGLTTADDVTTLDRRYTAQLWFDAARQVPKRSLMVNYVSPFPDRREFSSLQDY
FT SIIVWEKENAYAGMSLVPVDFSPVSIADYKPAANLTFPSLTRPSAVDTSDIAKNPRVAS
FT SKRAPRAAASDILSRLKEFNSPAPTPPSPGLSQREPAAQLSYEAKYPVEESQVPADFRF
FT YQPVVEEDRVHVEPADAPDAYDRLSKQQLKLAIENNMQLLAKIQNSPILGELDLDAERK
FT RREDFQKVESARNERIQRRSSFVPFGPTRPRPVLTPRAPAAKRPQVHGKLPPSEVKHAP
FT VEINDAAAEQVQRQIPQLGRPVSPRTITDPFAALKADKANPGTYYQKSSEDLAFDALGK
FT EQLPQANFGHTGADVSVQDGIATDSLAKN"
FT CDS 4755. .>6595
FT /codon_start=1
FT /product="putative RNA-dependent RNA polymerase"
FT /protein_id="ADO60933.1"
FT /translation="MLSAYELLSKHSQGAKRVVAGLTDSMSASTYKMSGTTYPGWDFSR
FT LYSKYNLSTPPNSYEAAAVASVLLNPRPDALNLGISPIYATNDLYATPSPVKPGIGSAW
FT LTDFSNTRLHELQRERFHQSDFIHPSLKDFCLFANYGESKTASCATRVLQLLGCAYPLV
FT DSHHLALAKQSLRLGDPNKLGMEQPALANYLIAAWSPHSMVFDDSNAIEGVDEEVYARL
FT HATFPLAPILVCLHDGHVTYAIRRKFLYAELTNYRAAYQNASPHLSAHEKELLTASYPK
FT NIGRAGGRVHLTLEMLLKTPLEPAQRALLLGFLKHRNAGNDFEQVFITTVALVPFLEGP
FT AGRDLTLFFLRNMPVICSLSTNQVAKWLKAAHAHARIFQCLPGLALPAITIQEIRMYGD
FT LIYGLDSLVGRSELMKLDFTAELFMRTADPIRRAVPTLTRTSLGYELTLSEELYETYED
FT RAINTTFREVLPEKLNLESFEAWYARRMFWGASGGAPGAKITWSDREGGDKLRLNKRGA
FT LLAIPAMHFTKILERAVSPVLWSVKALKFEPGKLRSILNTSMEHYVMQAYLLDHFDANV
FT NSGTWYAIANAGAARLAAHARRLESLRHSVGFMWDFA"
XX
SQ Sequence 6595 BP; 1633 A; 1677 C; 1496 G; 1789 T; 0 other;
gu108594 Length: 6595 28-JAN-2011 Type: N Check: 1598 ..
1 ccagtgtagt agggggcagg aaagaacgaa gcacgtgctt atcggtttgg
51 ctcacccaac ttgggcgaaa tcgtagcgtg tggatactca aagtgtcaag
101 gtacagtcaa catgcaaaca cgactagtac cgaaaactcc cacaaacttt
151 gaggcctact acagagcgta caagtgctag ggtagaaaga gctggggcta
201 taacccccgg atctcttatc aggccagcac cgctcagccc ctctttttgt
251 gtaaatccca cccggtctag cggagtggga cgcatataaa atgagcgtgt
301 aacatcgctc aacccgtcca agcacatgac actaaactgt actcgcccag
351 gatatggcgt taaactgtac cgtccgcgtt tgccagcggt taaaacaacg
401 gcttttcatc acagccgcgt gcgagtccgc gggataataa atgttctaac
451 agactcgaaa agacatccta ttttcaagtt ctcgtcgcta cgttaaacgt
501 cggcatttct tggatctggt ggggtaacat acaagtcaag tatggtgtga
551 accggggcta cacaactacc gggaagctaa cgtaactgcg ctggtgctct
601 actttcaacg tgcttcagga ccgaaaccgt ccgtaaacca atgggttgca
651 cagaaagtaa aggcgtaggg aacgtgccta ggacaagaac taggtggaca
701 gactgacact catcagtgct ttctcgattg aaagcagtag caaacagtcg
751 gtgcgggaac tccgcatgat gtcttcttac gggatcaaga cggtaaacca
801 gactgctacg gtggcagtcg atgcatcagc cgaaaatggt gcacaaatta
851 accggggtag caacctagat agctcattca ccgctggtgt caactacagc
901 ggtaaccttt catctgtatc aaaagcagat ctccttgtgc atgctcagca
951 ctctaaaaat gagcaatttt cttttgtttt tctctctaga tggcagcgct
1001 tttgcactgc tatcattgca ttctttactt cttttgttgc gctctttgaa
1051 cgcgaaattt actctgtttt tctttctcca catttgctaa ttttgcgatc
1101 taacatagcg caacaaaccg tctcgcctgc actatacaat ttcccttctc
1151 ggcacacata tcatatgttg ggctatcgct ggagttgtat tccactgttg
1201 ttatattctt acggtttctt atcattctcg caagcggagc attttcgtaa
1251 catccaaaaa ttctctgact tgcccctttc tcttagaatg tcgatactaa
1301 ggcaccgtcg atctgccatt ctagtgcgcg ttagtttcca acacgttgaa
1351 aacgtgttag ctccgtccac tactgggtct tatgaattac ttagtctgcg
1401 aattcttttg aattcagagg ctgcgtactt cgcaacacct tactctacgg
1451 ctgaatctaa accaactatg gaattttcta ctccgtcggt tcccgccctc
1501 ggtggagcgc gagctgtttt aacgcagctc ccaacctccg ctagagcagc
1551 tgggttgagc aagaaatggt cgccgcaaat gtatcctacg caagcggttg
1601 accagcgtgt agtgtttgac gtgactgcta gaggtattaa gagtttgagg
1651 gaaaacaatt ttgtacgctc tttcccagaa aatttgcccc aaccgcgtca
1701 acccacacat ttctcggaac tgttaactag cattcttgct ggtcgacttt
1751 ctacttctac ggctcctgct gccaacacgg ttgccactca gtttaaccgc
1801 tcttggcaac gtcaaccaat tgttgatcga acactcgctc ctcagcatgc
1851 tggtctggcc agtgttctgg aaggtatcga ttattcgaaa cagtctttgg
1901 ctgcagctga acaagccgtt tcaatcaata ggttcttaga cactcggggt
1951 aaccgtatca ttcctagatg ggaagcagat caatggaata ggtggagtgg
2001 tattacttct ttgtattcac tcggccagtc ggatcgcagt taccttcaaa
2051 ttgcttaccg gttgttagct cggtactact ttgctctgtt ggcagaggaa
2101 ttacccgaaa tgactccatt agttacaact gttggtacta atacgacgct
2151 aactggcttg actactctac tcgctccccc tgctccgcca gttcctggtc
2201 agcccattcc actgccggtt aaccctgaag ctgccttgtt cactcaagcg
2251 gcattctcag gacttaaaac aggcacggca cagctggttg acgccgaagg
2301 tttgagcgag gatgaactca ttgaactctt atctgccata gtccctgtgg
2351 aaagtgccaa tatcccgtta ttgagcactg ctgcgaatcc accagaaacg
2401 tttttcccag gaccaactag atacacttat gataataagg tcaatgaggt
2451 atttatccac tttggcaata atgctattcc ggatctggcg caactcgcca
2501 ctgaagtcca tcggattccg catgctgcgc aaatcttgtc tgtcttacgt
2551 tacctcgcta tgcgtcatgg tgcagctcaa gatattgatg atgctttgga
2601 gattctaatg gcacgggtgg ttttatatac taattccact cagctacgtg
2651 gtcttcgcaa taacgcgccc gtcggagaat acattaattc agacggacac
2701 tacgaaatgc atctaccctt agctaaaacg ggttcggctt attttgactc
2751 ttttatggtc ccccatgcta tgactggcga tctacctgct ttcgctagcc
2801 tacctgctag gagtgttata aataatggag tcttattcgc ccaagcgcgc
2851 gctgctgcac tcaattgggc ggctgctgct tggagtatgt ctggtagatc
2901 ttgggtgaac tcgccagggc gtgaaaacaa ttcttatgtg cgtaatcaca
2951 ttgatgtctt cttgcgcaaa tactctagcg acattcttaa tctttggact
3001 tctaaccaca acaatgctct ggctttccac gtcgggtggt cactctccgc
3051 cactgcacgc agtacagaag caaatgttgt agttaactgg tggaatgact
3101 accattctcc tactctcacc aatgcttacc tcgaattatg gcaagttgaa
3151 tgcttgcctt cgcatcaagt actaccgtgg gatgatcgag aaacaccttc
3201 cactgtgtca tggccgtcga acactccgtt ccctatccat gatgcctatt
3251 cgttttcgtc acacttgcac gttcaagtcg cccgcgatac tccagctgaa
3301 gttggtcgta ccttcatggg cgacggtggt gctattgcga acgcgcagca
3351 ctttgctgcc attggttcag tgaatggttt cagattcgag gacgcggcta
3401 acgctcctaa gatatcaatc gctcgctgga ggcagcgcca cgctttccag
3451 ttccctgtcg cgccggcatc gcaagctcct gtttggatgg ctgagccggg
3501 tagtcctttc gcggatttcc tgtctccagg ctccatgaat tcacacaatg
3551 tggaagctaa cgttgcttat tcgtatggtt tgaccacggc cgatgacgtt
3601 acaactctag accgtcgcta cactgcccaa ttatggttcg atgcagcacg
3651 tcaagttccc aagcgttcgc taatggttaa ttacgtgtct cctttccctg
3701 accgtagaga gtttagttca ctacaagatt attcaatcat agtctgggaa
3751 aaagaaaatg cttatgccgg aatgtcacta gtccctgtag acttttcacc
3801 agttagtatc gccgattaca agccggcggc taacttgact ttcccgtcgc
3851 tcactcgtcc ttccgccgtc gatacgagtg atattgcgaa gaatccgcgt
3901 gtggctagtt ctaaacgggc tccacgcgct gctgcttctg atatcctatc
3951 gcggttaaag gaatttaact cccctgcacc cactccccct tctccagggc
4001 tttctcaacg agaaccggct gcgcaacttt cctacgaggc aaaatacccc
4051 gtcgaggaga gtcaagtccc agcggatttt cgattctacc aaccagtggt
4101 tgaggaggac cgagttcatg tagagccagc ggatgcccct gatgcttatg
4151 atcgcttatc taagcaacag ctcaaacttg ccatcgagaa caacatgcaa
4201 ctactagcta aaatccaaaa ttcgcctatt ttgggagaat tagacttaga
4251 tgcagagcgt aagcgccgtg aggattttca aaaggttgag tctgcgcgta
4301 atgagcggat acaacgccgg tctagttttg tgcctttcgg tccaacacga
4351 ccccgacctg tacttacccc gcgagcccct gccgctaaac gcccgcaagt
4401 ccacggtaaa ctcccaccct ctgaagtgaa gcatgctccc gtcgagatta
4451 atgatgctgc agccgagcaa gtccaacgcc aaattcccca attgggcaga
4501 cctgtttcgc ctcgcactat cacggatcct ttcgctgctc taaaagccga
4551 taaagccaac cccggtacat actatcagaa gtcatcggag gatcttgctt
4601 tcgacgcttt aggcaaagag caattaccac aagcaaactt tgggcatact
4651 ggcgcggacg ttagcgtgca ggatgggata gcaactgact cactagcgaa
4701 aaactagtgt ggaacgttgc ttactaccgt tctgcgcgca acgttcacgc
4751 cagtatgctg tcagcttatg agttgctttc taagcattct caaggagcca
4801 agagagtagt cgcaggcctt accgacagta tgtcggctag cacatataaa
4851 atgagcggta caacgtaccc cggctgggat ttttcacgct tatactctaa
4901 gtacaattta tctacaccgc caaattctta tgaagctgct gccgtagcca
4951 gtgtactgct taaccccaga ccggatgcgc tgaacttggg catttcccca
5001 atctatgcta ctaatgatct gtacgctact ccttcaccag ttaaaccggg
5051 tattggcagt gcatggttaa ctgactttag caacacgcgt ttgcacgagc
5101 tacaacggga acgtttccat caaagtgatt tcattcatcc tagcttaaaa
5151 gacttctgtt tgtttgcaaa ttatggggaa tcaaagacgg cctcctgtgc
5201 aactcgcgtg ctacagttgc tcggttgtgc ttatccttta gtggattcgc
5251 accatctagc actagctaaa caatctctac gactcggaga cccgaacaag
5301 ttaggtatgg agcaacccgc gctagcaaat tacttgatag cagcttggtc
5351 gccgcattca atggtttttg atgattcaaa tgcaattgaa ggtgttgacg
5401 aagaagtgta tgctcgatta cacgctactt ttccattggc tccgatatta
5451 gtgtgcttac acgatggcca cgttacatac gccattcgtc gtaagttcct
5501 ctacgcagag ctcactaatt accgagctgc ataccaaaac gccagtccac
5551 acttaagcgc gcacgaaaaa gagttactca ctgccagtta tccaaagaac
5601 attggccgtg caggtggtag agtacatcta acactcgaga tgttgctcaa
5651 aactcccttg gaacccgcgc aacgtgcctt gttgttaggg tttcttaaac
5701 acagaaatgc gggtaatgac tttgagcaag tgtttataac taccgtagct
5751 ttagtaccct tcctggaagg cccagctgga cgtgatttga cgttgttttt
5801 cttacgaaat atgccggtaa tatgttcact ctctacgaat caagtcgcaa
5851 aatggttgaa agccgcacat gcccatgctc gcatttttca atgtcttcct
5901 ggcttagcgt tacctgcaat taccattcaa gagatcagga tgtatggcga
5951 cttgatttac ggcttagact ctctagtcgg tcgctcagag ttgatgaagc
6001 tggatttcac ggctgaactc tttatgcgta ctgctgaccc tattagacgc
6051 gcggttccta cgctaactcg cacttcgcta ggttatgagt taactttgag
6101 tgaagaactt tatgagacat acgaggacag ggcaatcaat acaactttta
6151 gagaagtgct tcctgagaag ttaaacttag agagttttga agcttggtac
6201 gcacggcgta tgttctgggg tgcttcaggt ggtgctcccg gggctaaaat
6251 aacatggtct gatcgtgaag ggggagataa gctcagattg aataaacgag
6301 gagctctgct tgctatacca gccatgcatt ttacgaagat acttgagcgt
6351 gctgtttcac cagtactctg gtcagtcaaa gccttaaaat ttgaaccagg
6401 caaactgcgt tccatactca acaccagcat ggaacactac gttatgcagg
6451 catatttact agaccacttc gatgcaaatg ttaacagcgg tacttggtat
6501 gcgattgcta atgcaggtgc agctcgttta gccgcccacg cacgaaggct
6551 agaatcgtta aggcattcag ttggttttat gtgggatttt gctga