Sequence of DPV Grapevine associated totivirus-2

Grapevine associated totivirus-2 isolate Ctg341 hypothetical protein gene, complete cds; and putative RNA-dependent RNA polymerase gene, partial cds.

ACC No: GU108594

Dated: 2011-01-28 | Length: 6595 | CRC: 1908600625

                
ID   GU108594; SV 1; linear; genomic RNA; STD; VRL; 6595 BP.
XX
AC   GU108594;
XX
DT   31-DEC-2010 (Rel. 107, Created)
DT   28-JAN-2011 (Rel. 107, Last updated, Version 2)
XX
DE   Grapevine associated totivirus-2 isolate Ctg341 hypothetical protein gene,
DE   complete cds; and putative RNA-dependent RNA polymerase gene, partial cds.
XX
KW   GDS.
XX
OS   Grapevine associated totivirus-2
OC   Viruses; dsRNA viruses; Totiviridae; Totivirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-6595
RX   PUBMED; 21140178.
RA   Al Rwahnih M., Daubert S., Urbez-Torres J.R., Cordero F., Rowhani A.;
RT   "Deep sequencing evidence from single grapevine plants reveals a virome
RT   dominated by mycoviruses";
RL   Arch. Virol. 0:0-0(2010).
XX
RN   [2]
RP   1-6595
RA   Al Rwahnih M., Rowhani A., Daubert S.;
RT   ;
RL   Submitted (15-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Pathology, University of California, Davis, One Shields
RL   Avenue, Davis, CA 95616, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .6595
FT                   /organism="Grapevine associated totivirus-2"
FT                   /host="Vitis vinifera cv. Syrah"
FT                   /isolate="Ctg341"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="10-Jun-2008"
FT                   /db_xref="taxon:908837"
FT   CDS             766. .4707
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /protein_id="ADO60932.1"
FT                   /translation="MMSSYGIKTVNQTATVAVDASAENGAQINRGSNLDSSFTAGVNYS
FT                   GNLSSVSKADLLVHAQHSKNEQFSFVFLSRWQRFCTAIIAFFTSFVALFEREIYSVFLS
FT                   PHLLILRSNIAQQTVSPALYNFPSRHTYHMLGYRWSCIPLLLYSYGFLSFSQAEHFRNI
FT                   QKFSDLPLSLRMSILRHRRSAILVRVSFQHVENVLAPSTTGSYELLSLRILLNSEAAYF
FT                   ATPYSTAESKPTMEFSTPSVPALGGARAVLTQLPTSARAAGLSKKWSPQMYPTQAVDQR
FT                   VVFDVTARGIKSLRENNFVRSFPENLPQPRQPTHFSELLTSILAGRLSTSTAPAANTVA
FT                   TQFNRSWQRQPIVDRTLAPQHAGLASVLEGIDYSKQSLAAAEQAVSINRFLDTRGNRII
FT                   PRWEADQWNRWSGITSLYSLGQSDRSYLQIAYRLLARYYFALLAEELPEMTPLVTTVGT
FT                   NTTLTGLTTLLAPPAPPVPGQPIPLPVNPEAALFTQAAFSGLKTGTAQLVDAEGLSEDE
FT                   LIELLSAIVPVESANIPLLSTAANPPETFFPGPTRYTYDNKVNEVFIHFGNNAIPDLAQ
FT                   LATEVHRIPHAAQILSVLRYLAMRHGAAQDIDDALEILMARVVLYTNSTQLRGLRNNAP
FT                   VGEYINSDGHYEMHLPLAKTGSAYFDSFMVPHAMTGDLPAFASLPARSVINNGVLFAQA
FT                   RAAALNWAAAAWSMSGRSWVNSPGRENNSYVRNHIDVFLRKYSSDILNLWTSNHNNALA
FT                   FHVGWSLSATARSTEANVVVNWWNDYHSPTLTNAYLELWQVECLPSHQVLPWDDRETPS
FT                   TVSWPSNTPFPIHDAYSFSSHLHVQVARDTPAEVGRTFMGDGGAIANAQHFAAIGSVNG
FT                   FRFEDAANAPKISIARWRQRHAFQFPVAPASQAPVWMAEPGSPFADFLSPGSMNSHNVE
FT                   ANVAYSYGLTTADDVTTLDRRYTAQLWFDAARQVPKRSLMVNYVSPFPDRREFSSLQDY
FT                   SIIVWEKENAYAGMSLVPVDFSPVSIADYKPAANLTFPSLTRPSAVDTSDIAKNPRVAS
FT                   SKRAPRAAASDILSRLKEFNSPAPTPPSPGLSQREPAAQLSYEAKYPVEESQVPADFRF
FT                   YQPVVEEDRVHVEPADAPDAYDRLSKQQLKLAIENNMQLLAKIQNSPILGELDLDAERK
FT                   RREDFQKVESARNERIQRRSSFVPFGPTRPRPVLTPRAPAAKRPQVHGKLPPSEVKHAP
FT                   VEINDAAAEQVQRQIPQLGRPVSPRTITDPFAALKADKANPGTYYQKSSEDLAFDALGK
FT                   EQLPQANFGHTGADVSVQDGIATDSLAKN"
FT   CDS             4755. .>6595
FT                   /codon_start=1
FT                   /product="putative RNA-dependent RNA polymerase"
FT                   /protein_id="ADO60933.1"
FT                   /translation="MLSAYELLSKHSQGAKRVVAGLTDSMSASTYKMSGTTYPGWDFSR
FT                   LYSKYNLSTPPNSYEAAAVASVLLNPRPDALNLGISPIYATNDLYATPSPVKPGIGSAW
FT                   LTDFSNTRLHELQRERFHQSDFIHPSLKDFCLFANYGESKTASCATRVLQLLGCAYPLV
FT                   DSHHLALAKQSLRLGDPNKLGMEQPALANYLIAAWSPHSMVFDDSNAIEGVDEEVYARL
FT                   HATFPLAPILVCLHDGHVTYAIRRKFLYAELTNYRAAYQNASPHLSAHEKELLTASYPK
FT                   NIGRAGGRVHLTLEMLLKTPLEPAQRALLLGFLKHRNAGNDFEQVFITTVALVPFLEGP
FT                   AGRDLTLFFLRNMPVICSLSTNQVAKWLKAAHAHARIFQCLPGLALPAITIQEIRMYGD
FT                   LIYGLDSLVGRSELMKLDFTAELFMRTADPIRRAVPTLTRTSLGYELTLSEELYETYED
FT                   RAINTTFREVLPEKLNLESFEAWYARRMFWGASGGAPGAKITWSDREGGDKLRLNKRGA
FT                   LLAIPAMHFTKILERAVSPVLWSVKALKFEPGKLRSILNTSMEHYVMQAYLLDHFDANV
FT                   NSGTWYAIANAGAARLAAHARRLESLRHSVGFMWDFA"
XX
SQ   Sequence 6595 BP; 1633 A; 1677 C; 1496 G; 1789 T; 0 other;

gu108594 Length: 6595  28-JAN-2011  Type: N  Check: 1598  ..

       1  ccagtgtagt agggggcagg aaagaacgaa gcacgtgctt atcggtttgg
      51  ctcacccaac ttgggcgaaa tcgtagcgtg tggatactca aagtgtcaag
     101  gtacagtcaa catgcaaaca cgactagtac cgaaaactcc cacaaacttt
     151  gaggcctact acagagcgta caagtgctag ggtagaaaga gctggggcta
     201  taacccccgg atctcttatc aggccagcac cgctcagccc ctctttttgt
     251  gtaaatccca cccggtctag cggagtggga cgcatataaa atgagcgtgt
     301  aacatcgctc aacccgtcca agcacatgac actaaactgt actcgcccag
     351  gatatggcgt taaactgtac cgtccgcgtt tgccagcggt taaaacaacg
     401  gcttttcatc acagccgcgt gcgagtccgc gggataataa atgttctaac
     451  agactcgaaa agacatccta ttttcaagtt ctcgtcgcta cgttaaacgt
     501  cggcatttct tggatctggt ggggtaacat acaagtcaag tatggtgtga
     551  accggggcta cacaactacc gggaagctaa cgtaactgcg ctggtgctct
     601  actttcaacg tgcttcagga ccgaaaccgt ccgtaaacca atgggttgca
     651  cagaaagtaa aggcgtaggg aacgtgccta ggacaagaac taggtggaca
     701  gactgacact catcagtgct ttctcgattg aaagcagtag caaacagtcg
     751  gtgcgggaac tccgcatgat gtcttcttac gggatcaaga cggtaaacca
     801  gactgctacg gtggcagtcg atgcatcagc cgaaaatggt gcacaaatta
     851  accggggtag caacctagat agctcattca ccgctggtgt caactacagc
     901  ggtaaccttt catctgtatc aaaagcagat ctccttgtgc atgctcagca
     951  ctctaaaaat gagcaatttt cttttgtttt tctctctaga tggcagcgct
    1001  tttgcactgc tatcattgca ttctttactt cttttgttgc gctctttgaa
    1051  cgcgaaattt actctgtttt tctttctcca catttgctaa ttttgcgatc
    1101  taacatagcg caacaaaccg tctcgcctgc actatacaat ttcccttctc
    1151  ggcacacata tcatatgttg ggctatcgct ggagttgtat tccactgttg
    1201  ttatattctt acggtttctt atcattctcg caagcggagc attttcgtaa
    1251  catccaaaaa ttctctgact tgcccctttc tcttagaatg tcgatactaa
    1301  ggcaccgtcg atctgccatt ctagtgcgcg ttagtttcca acacgttgaa
    1351  aacgtgttag ctccgtccac tactgggtct tatgaattac ttagtctgcg
    1401  aattcttttg aattcagagg ctgcgtactt cgcaacacct tactctacgg
    1451  ctgaatctaa accaactatg gaattttcta ctccgtcggt tcccgccctc
    1501  ggtggagcgc gagctgtttt aacgcagctc ccaacctccg ctagagcagc
    1551  tgggttgagc aagaaatggt cgccgcaaat gtatcctacg caagcggttg
    1601  accagcgtgt agtgtttgac gtgactgcta gaggtattaa gagtttgagg
    1651  gaaaacaatt ttgtacgctc tttcccagaa aatttgcccc aaccgcgtca
    1701  acccacacat ttctcggaac tgttaactag cattcttgct ggtcgacttt
    1751  ctacttctac ggctcctgct gccaacacgg ttgccactca gtttaaccgc
    1801  tcttggcaac gtcaaccaat tgttgatcga acactcgctc ctcagcatgc
    1851  tggtctggcc agtgttctgg aaggtatcga ttattcgaaa cagtctttgg
    1901  ctgcagctga acaagccgtt tcaatcaata ggttcttaga cactcggggt
    1951  aaccgtatca ttcctagatg ggaagcagat caatggaata ggtggagtgg
    2001  tattacttct ttgtattcac tcggccagtc ggatcgcagt taccttcaaa
    2051  ttgcttaccg gttgttagct cggtactact ttgctctgtt ggcagaggaa
    2101  ttacccgaaa tgactccatt agttacaact gttggtacta atacgacgct
    2151  aactggcttg actactctac tcgctccccc tgctccgcca gttcctggtc
    2201  agcccattcc actgccggtt aaccctgaag ctgccttgtt cactcaagcg
    2251  gcattctcag gacttaaaac aggcacggca cagctggttg acgccgaagg
    2301  tttgagcgag gatgaactca ttgaactctt atctgccata gtccctgtgg
    2351  aaagtgccaa tatcccgtta ttgagcactg ctgcgaatcc accagaaacg
    2401  tttttcccag gaccaactag atacacttat gataataagg tcaatgaggt
    2451  atttatccac tttggcaata atgctattcc ggatctggcg caactcgcca
    2501  ctgaagtcca tcggattccg catgctgcgc aaatcttgtc tgtcttacgt
    2551  tacctcgcta tgcgtcatgg tgcagctcaa gatattgatg atgctttgga
    2601  gattctaatg gcacgggtgg ttttatatac taattccact cagctacgtg
    2651  gtcttcgcaa taacgcgccc gtcggagaat acattaattc agacggacac
    2701  tacgaaatgc atctaccctt agctaaaacg ggttcggctt attttgactc
    2751  ttttatggtc ccccatgcta tgactggcga tctacctgct ttcgctagcc
    2801  tacctgctag gagtgttata aataatggag tcttattcgc ccaagcgcgc
    2851  gctgctgcac tcaattgggc ggctgctgct tggagtatgt ctggtagatc
    2901  ttgggtgaac tcgccagggc gtgaaaacaa ttcttatgtg cgtaatcaca
    2951  ttgatgtctt cttgcgcaaa tactctagcg acattcttaa tctttggact
    3001  tctaaccaca acaatgctct ggctttccac gtcgggtggt cactctccgc
    3051  cactgcacgc agtacagaag caaatgttgt agttaactgg tggaatgact
    3101  accattctcc tactctcacc aatgcttacc tcgaattatg gcaagttgaa
    3151  tgcttgcctt cgcatcaagt actaccgtgg gatgatcgag aaacaccttc
    3201  cactgtgtca tggccgtcga acactccgtt ccctatccat gatgcctatt
    3251  cgttttcgtc acacttgcac gttcaagtcg cccgcgatac tccagctgaa
    3301  gttggtcgta ccttcatggg cgacggtggt gctattgcga acgcgcagca
    3351  ctttgctgcc attggttcag tgaatggttt cagattcgag gacgcggcta
    3401  acgctcctaa gatatcaatc gctcgctgga ggcagcgcca cgctttccag
    3451  ttccctgtcg cgccggcatc gcaagctcct gtttggatgg ctgagccggg
    3501  tagtcctttc gcggatttcc tgtctccagg ctccatgaat tcacacaatg
    3551  tggaagctaa cgttgcttat tcgtatggtt tgaccacggc cgatgacgtt
    3601  acaactctag accgtcgcta cactgcccaa ttatggttcg atgcagcacg
    3651  tcaagttccc aagcgttcgc taatggttaa ttacgtgtct cctttccctg
    3701  accgtagaga gtttagttca ctacaagatt attcaatcat agtctgggaa
    3751  aaagaaaatg cttatgccgg aatgtcacta gtccctgtag acttttcacc
    3801  agttagtatc gccgattaca agccggcggc taacttgact ttcccgtcgc
    3851  tcactcgtcc ttccgccgtc gatacgagtg atattgcgaa gaatccgcgt
    3901  gtggctagtt ctaaacgggc tccacgcgct gctgcttctg atatcctatc
    3951  gcggttaaag gaatttaact cccctgcacc cactccccct tctccagggc
    4001  tttctcaacg agaaccggct gcgcaacttt cctacgaggc aaaatacccc
    4051  gtcgaggaga gtcaagtccc agcggatttt cgattctacc aaccagtggt
    4101  tgaggaggac cgagttcatg tagagccagc ggatgcccct gatgcttatg
    4151  atcgcttatc taagcaacag ctcaaacttg ccatcgagaa caacatgcaa
    4201  ctactagcta aaatccaaaa ttcgcctatt ttgggagaat tagacttaga
    4251  tgcagagcgt aagcgccgtg aggattttca aaaggttgag tctgcgcgta
    4301  atgagcggat acaacgccgg tctagttttg tgcctttcgg tccaacacga
    4351  ccccgacctg tacttacccc gcgagcccct gccgctaaac gcccgcaagt
    4401  ccacggtaaa ctcccaccct ctgaagtgaa gcatgctccc gtcgagatta
    4451  atgatgctgc agccgagcaa gtccaacgcc aaattcccca attgggcaga
    4501  cctgtttcgc ctcgcactat cacggatcct ttcgctgctc taaaagccga
    4551  taaagccaac cccggtacat actatcagaa gtcatcggag gatcttgctt
    4601  tcgacgcttt aggcaaagag caattaccac aagcaaactt tgggcatact
    4651  ggcgcggacg ttagcgtgca ggatgggata gcaactgact cactagcgaa
    4701  aaactagtgt ggaacgttgc ttactaccgt tctgcgcgca acgttcacgc
    4751  cagtatgctg tcagcttatg agttgctttc taagcattct caaggagcca
    4801  agagagtagt cgcaggcctt accgacagta tgtcggctag cacatataaa
    4851  atgagcggta caacgtaccc cggctgggat ttttcacgct tatactctaa
    4901  gtacaattta tctacaccgc caaattctta tgaagctgct gccgtagcca
    4951  gtgtactgct taaccccaga ccggatgcgc tgaacttggg catttcccca
    5001  atctatgcta ctaatgatct gtacgctact ccttcaccag ttaaaccggg
    5051  tattggcagt gcatggttaa ctgactttag caacacgcgt ttgcacgagc
    5101  tacaacggga acgtttccat caaagtgatt tcattcatcc tagcttaaaa
    5151  gacttctgtt tgtttgcaaa ttatggggaa tcaaagacgg cctcctgtgc
    5201  aactcgcgtg ctacagttgc tcggttgtgc ttatccttta gtggattcgc
    5251  accatctagc actagctaaa caatctctac gactcggaga cccgaacaag
    5301  ttaggtatgg agcaacccgc gctagcaaat tacttgatag cagcttggtc
    5351  gccgcattca atggtttttg atgattcaaa tgcaattgaa ggtgttgacg
    5401  aagaagtgta tgctcgatta cacgctactt ttccattggc tccgatatta
    5451  gtgtgcttac acgatggcca cgttacatac gccattcgtc gtaagttcct
    5501  ctacgcagag ctcactaatt accgagctgc ataccaaaac gccagtccac
    5551  acttaagcgc gcacgaaaaa gagttactca ctgccagtta tccaaagaac
    5601  attggccgtg caggtggtag agtacatcta acactcgaga tgttgctcaa
    5651  aactcccttg gaacccgcgc aacgtgcctt gttgttaggg tttcttaaac
    5701  acagaaatgc gggtaatgac tttgagcaag tgtttataac taccgtagct
    5751  ttagtaccct tcctggaagg cccagctgga cgtgatttga cgttgttttt
    5801  cttacgaaat atgccggtaa tatgttcact ctctacgaat caagtcgcaa
    5851  aatggttgaa agccgcacat gcccatgctc gcatttttca atgtcttcct
    5901  ggcttagcgt tacctgcaat taccattcaa gagatcagga tgtatggcga
    5951  cttgatttac ggcttagact ctctagtcgg tcgctcagag ttgatgaagc
    6001  tggatttcac ggctgaactc tttatgcgta ctgctgaccc tattagacgc
    6051  gcggttccta cgctaactcg cacttcgcta ggttatgagt taactttgag
    6101  tgaagaactt tatgagacat acgaggacag ggcaatcaat acaactttta
    6151  gagaagtgct tcctgagaag ttaaacttag agagttttga agcttggtac
    6201  gcacggcgta tgttctgggg tgcttcaggt ggtgctcccg gggctaaaat
    6251  aacatggtct gatcgtgaag ggggagataa gctcagattg aataaacgag
    6301  gagctctgct tgctatacca gccatgcatt ttacgaagat acttgagcgt
    6351  gctgtttcac cagtactctg gtcagtcaaa gccttaaaat ttgaaccagg
    6401  caaactgcgt tccatactca acaccagcat ggaacactac gttatgcagg
    6451  catatttact agaccacttc gatgcaaatg ttaacagcgg tacttggtat
    6501  gcgattgcta atgcaggtgc agctcgttta gccgcccacg cacgaaggct
    6551  agaatcgtta aggcattcag ttggttttat gtgggatttt gctga