Sequence of DPV Okra enation leaf curl virus
Okra enation leaf curl virus [India:Sonipat EL10:2006] segment DNA-A, complete sequence.
ACC No: GU111996
Dated: 2012-05-20 | Length: 2723 | CRC: -278013815
ID GU111996; SV 1; circular; genomic DNA; STD; VRL; 2723 BP. XX AC GU111996; XX DT 02-JAN-2011 (Rel. 107, Created) DT 20-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Okra enation leaf curl virus [India:Sonipat EL10:2006] segment DNA-A, DE complete sequence. XX KW . XX OS Okra enation leaf curl virus [India:Sonipat EL10:2006] OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2723 RX PUBMED; 22447131. RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S., RA Krishna Reddy M.; RT "Molecular characterization of distinct bipartite begomovirus infecting RT bhendi (Abelmoschus esculentus L.) in India"; RL Virus Genes 44(3):522-535(2012). XX RN [2] RP 1-2723 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT "Molecular genetic diversity of begomoviruses infecting okra in India"; RL Unpublished. XX RN [3] RP 1-2723 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT ; RL Submitted (26-SEP-2009) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India XX FH Key Location/Qualifiers FH FT source 1. .2723 FT /organism="Okra enation leaf curl virus [India:Sonipat FT EL10:2006]" FT /segment="DNA-A" FT /host="Abelmoschus esculentus (okra)" FT /isolate="EL10" FT /mol_type="genomic DNA" FT /country="India:Sonipat, Haryana" FT /isolation_source="leaf" FT /collected_by="M.Krishnareddy" FT /collection_date="2006" FT /db_xref="taxon:908131" FT gene 121. .486 FT /gene="AV2" FT CDS 121. .486 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:E7BND7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E7BND7" FT /protein_id="ADO40461.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDL FT ISILRCRNYVEASCRYRHFYPRVEGASSTELRQPVFNPCSCPHCPRHKITNVGQQTHVP FT EAQNVQDIQKPGCSKRM" FT gene 281. .1039 FT /gene="AV1" FT CDS 281. .1039 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7BND8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E7BND8" FT /protein_id="ADO40462.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYSTRAVAPTVRVTKSRMWA FT NRPMYRKPRMYRIYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLICRENIKTKNHTYTVMFWIVRDRRPTGTPYDFQQVFNVYDNEPSTATVK FT NDQRDRFQVLRRFQATVTGRQYACKEQFKIRKFYRVNNYWVYNHQEAGKYENHTENALL FT LYMACTHASNPVYATLKVRSYFYDSVTNSY" FT gene complement(1036. .1440) FT /gene="AC3" FT CDS complement(1036. .1440) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E7BND9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7BND9" FT /protein_id="ADO40463.1" FT /translation="MDSRTGERITAAHSTNGVFIWEVPNPLYFKILSHDNRPFTTNMDI FT ITMRIQFNYNLRKALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNHLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSDIKFDLY" FT gene complement(1133. .1585) FT /gene="AC2" FT CDS complement(1133. .1585) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E7BNE0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7BNE0" FT /protein_id="ADO40464.1" FT /translation="MQHSSFSPNRSTPVPIKVQHREAKRAHRRKRVDLECGCSYYLSIN FT CHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP FT SESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQVSQPSRCNLN" FT gene complement(1482. .2570) FT /gene="AC1" FT CDS complement(1482. .2570) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:E7BNE1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7BNE1" FT /protein_id="ADO40465.1" FT /translation="MPPKRFLINSKNYFLTYPKCSLTKEEALSQIKNFQTPTSKKYIKI FT CRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKTYME FT KDGDILDHGVFQVDGRSARGGCQTANDAYAEAINAGSKAQALRVIKELAPRDFLLQFHN FT LNSNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWACENVVDAAARPLRPQSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFVFLTQPLY FT SGTNQSSTQGSEESAQEETSGP" FT gene complement(2114. .2416) FT /gene="AC4" FT CDS complement(2114. .2416) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7BNE2" FT /protein_id="ADO40466.1" FT /translation="MGNLICTCSSSSRGNTSARISDSSTWSPQAGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFSKSMEDQLEEVAKLPTTHMPRQSTQGPKLRPSESLRS" XX SQ Sequence 2723 BP; 709 A; 557 C; 649 G; 808 T; 0 other; gu111996 Length: 2723 20-MAY-2012 Type: N Check: 4045 .. 1 accggatggc cgcgcgattt tttttagtgg tgggtccaga acgcacgacg 51 atgcagactc aaagcttaga taacgctcct ttcgctataa gtacttgcgc 101 actaagtttc aaattgaaac atgtgggatc cattgttaaa cgagttccct 151 gagacggttc acgggtttcg ttgcatgctt gctattaaat atcttcaaca 201 actgtctgag gaatactctc ctgatacggt tgggtacgat ctaattcgcg 251 atctaatttc tattttacgt tgtaggaatt atgtcgaagc gtcctgccga 301 tatcgtcatt tctacccccg cgtcgaaggt gcgtcgtcga ctgaacttcg 351 acagcccgta ttcaacccgt gcagttgccc ccactgtccg cgtcacaaaa 401 tcacgaatgt gggccaacag acccatgtac cggaagccca gaatgtacag 451 gatatacaga agcccggatg ttccaagagg atgtgaaggc ccatgtaagg 501 tgcagtcttt tgatgcgaag aacgatattg gtcacatggg taaggttatc 551 tgtctatctg atgttactag gggtattggg ctgacccatc gagtagggaa 601 acgtttttgc gtgaagtcat tgatttgcag ggagaacatc aagactaaga 651 accatacgta caccgttatg ttttggatcg tgagagacag gcgtcctaca 701 ggcaccccct acgatttcca gcaagtgttc aatgtttatg acaacgagcc 751 ttctacggct actgtaaaga acgaccagcg tgatcgattc caggttttga 801 ggaggtttca ggcaacagtt actggacgac agtatgcttg taaggaacaa 851 tttaaaatta ggaaattcta tcgtgttaac aattactggg tgtataatca 901 ccaggaagct gggaagtatg aaaatcacac tgagaatgct ttgttgttgt 951 atatggcatg tactcatgcc tctaaccctg tgtatgctac tttgaaagtt 1001 aggagttact tctacgattc tgtaacgaat tcgtattaat aaagatcgaa 1051 ttttatatct gaatattgat ccacatacat tgtttgttga attacattgt 1101 acaatacgtg ttctacagcc ttaattacta aattaattga gattacacct 1151 agatggttga gatacttgag gacttgggtt ttgaataccc ttaagaaaag 1201 accagtcgga gggtgtaagg tcgtccagat tcggaaggtt agaaaacact 1251 tgtgcactcc cagagctttc cgaaggttgt agttgaattg gatcctcatt 1301 gttatgatgt ccatgttcgt cgtgaatgga cggttgtcgt ggctgaggat 1351 tttgaaataa aggggatttg gaacctccca gataaagacg ccattcgttg 1401 aatgagctgc agtgatgcgt tcccctgtgc gagaatccat ggttgtggca 1451 gttgatactt aggtaatagc tgcatccaca ctcaaggtcc actcgtttcc 1501 tcctgtgcgc tctcttcgct tccctgtgtt gaactttgat tggtaccgga 1551 gtagagcggt tgggtgagaa agacgaatgt tgcattcttt aaagcccagg 1601 attttaatgc tgagttctta tcctcgtcta agaactcttt atagcttgca 1651 ttgggccctg gattgcagag gaagattgtt ggtatgccgc ctttaatttg 1701 aactggcttc ccgtactttg tgtttgattg ccagtccctt tgggccccca 1751 tgaattcttt aaagtgtttt aggaagtgtg gatcgacgtc atcaatgacg 1801 ttataccaag cgtcgttact gtacaccttt gggctaaggt ccagatgccc 1851 gcataaatag ttatgtgggc ctaaagacct agcccacatt gtttttccag 1901 tacgactatc tccctcaatt actatacttt gaggtctcag gggccgcgca 1951 gcggcatcga caacgttctc gcacgcccac tcttcaagtt cttctggaac 2001 ttgatcaaaa gaagaagaag aaaaaggaga aacataagga gctggaggct 2051 cctgaaaata tctatctaaa ttagaattta aattatgaaa ttgaagtaga 2101 aagtctcttg gggctaactc cttaatgact ctgagggcct gagctttgga 2151 ccctgcgttg attgcctcgg catatgcgtc gttggcagtt tggcaacctc 2201 ctctagctga tcttccatcg acttggaaaa ctccatgatc aaggatgtct 2251 ccgtctttct ccatgtaggt tttgacatcg cttgagcttt tagctccctg 2301 aatgttcgga tggaaatgtg ctgacctgct tggggagacc aggtcgaaga 2351 atcgctgatt ctggcacttg tatttcccct cgaactggat gagcacgtgc 2401 agatgaggtt ccccattttc atgaagttct ctgcagattt taatatattt 2451 ttttgaagtg ggggtttgga aattcttgat ttgggaaagt gcttcttctt 2501 tggtgagaga gcacttggga taagtgagga aataattttt ggagttaata 2551 aggaaacgct taggaggcat gttgactaag atagaggacc cgattgaccg 2601 ctcttgcaac tctcccctgt atatcgggtc tcaatatata gtgagaccca 2651 aatggcaaaa ttgtaattgt gggaataaat tcaaaatcct cacgctccaa 2701 aaagcggcca tccgtataat att