Sequence of DPV Okra enation leaf curl virus

Okra enation leaf curl virus [India:Sonipat EL10:2006] segment DNA-A, complete sequence.

ACC No: GU111996

Dated: 2012-05-20 | Length: 2723 | CRC: -278013815

                
ID   GU111996; SV 1; circular; genomic DNA; STD; VRL; 2723 BP.
XX
AC   GU111996;
XX
DT   02-JAN-2011 (Rel. 107, Created)
DT   20-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Okra enation leaf curl virus [India:Sonipat EL10:2006] segment DNA-A,
DE   complete sequence.
XX
KW   .
XX
OS   Okra enation leaf curl virus [India:Sonipat EL10:2006]
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2723
RX   PUBMED; 22447131.
RA   Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S.,
RA   Krishna Reddy M.;
RT   "Molecular characterization of distinct bipartite begomovirus infecting
RT   bhendi (Abelmoschus esculentus L.) in India";
RL   Virus Genes 44(3):522-535(2012).
XX
RN   [2]
RP   1-2723
RA   Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA   Jalali S., Krishnareddy M.;
RT   "Molecular genetic diversity of begomoviruses infecting okra in India";
RL   Unpublished.
XX
RN   [3]
RP   1-2723
RA   Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA   Jalali S., Krishnareddy M.;
RT   ;
RL   Submitted (26-SEP-2009) to the INSDC.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2723
FT                   /organism="Okra enation leaf curl virus [India:Sonipat
FT                   EL10:2006]"
FT                   /segment="DNA-A"
FT                   /host="Abelmoschus esculentus (okra)"
FT                   /isolate="EL10"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Sonipat, Haryana"
FT                   /isolation_source="leaf"
FT                   /collected_by="M.Krishnareddy"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:908131"
FT   gene            121. .486
FT                   /gene="AV2"
FT   CDS             121. .486
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="precoat protein"
FT                   /db_xref="GOA:E7BND7"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:E7BND7"
FT                   /protein_id="ADO40461.1"
FT                   /translation="MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDL
FT                   ISILRCRNYVEASCRYRHFYPRVEGASSTELRQPVFNPCSCPHCPRHKITNVGQQTHVP
FT                   EAQNVQDIQKPGCSKRM"
FT   gene            281. .1039
FT                   /gene="AV1"
FT   CDS             281. .1039
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7BND8"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:E7BND8"
FT                   /protein_id="ADO40462.1"
FT                   /translation="MSKRPADIVISTPASKVRRRLNFDSPYSTRAVAPTVRVTKSRMWA
FT                   NRPMYRKPRMYRIYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR
FT                   VGKRFCVKSLICRENIKTKNHTYTVMFWIVRDRRPTGTPYDFQQVFNVYDNEPSTATVK
FT                   NDQRDRFQVLRRFQATVTGRQYACKEQFKIRKFYRVNNYWVYNHQEAGKYENHTENALL
FT                   LYMACTHASNPVYATLKVRSYFYDSVTNSY"
FT   gene            complement(1036. .1440)
FT                   /gene="AC3"
FT   CDS             complement(1036. .1440)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:E7BND9"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:E7BND9"
FT                   /protein_id="ADO40463.1"
FT                   /translation="MDSRTGERITAAHSTNGVFIWEVPNPLYFKILSHDNRPFTTNMDI
FT                   ITMRIQFNYNLRKALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNHLGVISINL
FT                   VIKAVEHVLYNVIQQTMYVDQYSDIKFDLY"
FT   gene            complement(1133. .1585)
FT                   /gene="AC2"
FT   CDS             complement(1133. .1585)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcription activator protein"
FT                   /db_xref="GOA:E7BNE0"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:E7BNE0"
FT                   /protein_id="ADO40464.1"
FT                   /translation="MQHSSFSPNRSTPVPIKVQHREAKRAHRRKRVDLECGCSYYLSIN
FT                   CHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP
FT                   SESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQVSQPSRCNLN"
FT   gene            complement(1482. .2570)
FT                   /gene="AC1"
FT   CDS             complement(1482. .2570)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replicase"
FT                   /db_xref="GOA:E7BNE1"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:E7BNE1"
FT                   /protein_id="ADO40465.1"
FT                   /translation="MPPKRFLINSKNYFLTYPKCSLTKEEALSQIKNFQTPTSKKYIKI
FT                   CRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKTYME
FT                   KDGDILDHGVFQVDGRSARGGCQTANDAYAEAINAGSKAQALRVIKELAPRDFLLQFHN
FT                   LNSNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWACENVVDAAARPLRPQSIVIEGDS
FT                   RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQ
FT                   SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFVFLTQPLY
FT                   SGTNQSSTQGSEESAQEETSGP"
FT   gene            complement(2114. .2416)
FT                   /gene="AC4"
FT   CDS             complement(2114. .2416)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:E7BNE2"
FT                   /protein_id="ADO40466.1"
FT                   /translation="MGNLICTCSSSSRGNTSARISDSSTWSPQAGQHISIRTFRELKAQ
FT                   AMSKPTWRKTETSLIMEFSKSMEDQLEEVAKLPTTHMPRQSTQGPKLRPSESLRS"
XX
SQ   Sequence 2723 BP; 709 A; 557 C; 649 G; 808 T; 0 other;

gu111996 Length: 2723  20-MAY-2012  Type: N  Check: 4045  ..

       1  accggatggc cgcgcgattt tttttagtgg tgggtccaga acgcacgacg
      51  atgcagactc aaagcttaga taacgctcct ttcgctataa gtacttgcgc
     101  actaagtttc aaattgaaac atgtgggatc cattgttaaa cgagttccct
     151  gagacggttc acgggtttcg ttgcatgctt gctattaaat atcttcaaca
     201  actgtctgag gaatactctc ctgatacggt tgggtacgat ctaattcgcg
     251  atctaatttc tattttacgt tgtaggaatt atgtcgaagc gtcctgccga
     301  tatcgtcatt tctacccccg cgtcgaaggt gcgtcgtcga ctgaacttcg
     351  acagcccgta ttcaacccgt gcagttgccc ccactgtccg cgtcacaaaa
     401  tcacgaatgt gggccaacag acccatgtac cggaagccca gaatgtacag
     451  gatatacaga agcccggatg ttccaagagg atgtgaaggc ccatgtaagg
     501  tgcagtcttt tgatgcgaag aacgatattg gtcacatggg taaggttatc
     551  tgtctatctg atgttactag gggtattggg ctgacccatc gagtagggaa
     601  acgtttttgc gtgaagtcat tgatttgcag ggagaacatc aagactaaga
     651  accatacgta caccgttatg ttttggatcg tgagagacag gcgtcctaca
     701  ggcaccccct acgatttcca gcaagtgttc aatgtttatg acaacgagcc
     751  ttctacggct actgtaaaga acgaccagcg tgatcgattc caggttttga
     801  ggaggtttca ggcaacagtt actggacgac agtatgcttg taaggaacaa
     851  tttaaaatta ggaaattcta tcgtgttaac aattactggg tgtataatca
     901  ccaggaagct gggaagtatg aaaatcacac tgagaatgct ttgttgttgt
     951  atatggcatg tactcatgcc tctaaccctg tgtatgctac tttgaaagtt
    1001  aggagttact tctacgattc tgtaacgaat tcgtattaat aaagatcgaa
    1051  ttttatatct gaatattgat ccacatacat tgtttgttga attacattgt
    1101  acaatacgtg ttctacagcc ttaattacta aattaattga gattacacct
    1151  agatggttga gatacttgag gacttgggtt ttgaataccc ttaagaaaag
    1201  accagtcgga gggtgtaagg tcgtccagat tcggaaggtt agaaaacact
    1251  tgtgcactcc cagagctttc cgaaggttgt agttgaattg gatcctcatt
    1301  gttatgatgt ccatgttcgt cgtgaatgga cggttgtcgt ggctgaggat
    1351  tttgaaataa aggggatttg gaacctccca gataaagacg ccattcgttg
    1401  aatgagctgc agtgatgcgt tcccctgtgc gagaatccat ggttgtggca
    1451  gttgatactt aggtaatagc tgcatccaca ctcaaggtcc actcgtttcc
    1501  tcctgtgcgc tctcttcgct tccctgtgtt gaactttgat tggtaccgga
    1551  gtagagcggt tgggtgagaa agacgaatgt tgcattcttt aaagcccagg
    1601  attttaatgc tgagttctta tcctcgtcta agaactcttt atagcttgca
    1651  ttgggccctg gattgcagag gaagattgtt ggtatgccgc ctttaatttg
    1701  aactggcttc ccgtactttg tgtttgattg ccagtccctt tgggccccca
    1751  tgaattcttt aaagtgtttt aggaagtgtg gatcgacgtc atcaatgacg
    1801  ttataccaag cgtcgttact gtacaccttt gggctaaggt ccagatgccc
    1851  gcataaatag ttatgtgggc ctaaagacct agcccacatt gtttttccag
    1901  tacgactatc tccctcaatt actatacttt gaggtctcag gggccgcgca
    1951  gcggcatcga caacgttctc gcacgcccac tcttcaagtt cttctggaac
    2001  ttgatcaaaa gaagaagaag aaaaaggaga aacataagga gctggaggct
    2051  cctgaaaata tctatctaaa ttagaattta aattatgaaa ttgaagtaga
    2101  aagtctcttg gggctaactc cttaatgact ctgagggcct gagctttgga
    2151  ccctgcgttg attgcctcgg catatgcgtc gttggcagtt tggcaacctc
    2201  ctctagctga tcttccatcg acttggaaaa ctccatgatc aaggatgtct
    2251  ccgtctttct ccatgtaggt tttgacatcg cttgagcttt tagctccctg
    2301  aatgttcgga tggaaatgtg ctgacctgct tggggagacc aggtcgaaga
    2351  atcgctgatt ctggcacttg tatttcccct cgaactggat gagcacgtgc
    2401  agatgaggtt ccccattttc atgaagttct ctgcagattt taatatattt
    2451  ttttgaagtg ggggtttgga aattcttgat ttgggaaagt gcttcttctt
    2501  tggtgagaga gcacttggga taagtgagga aataattttt ggagttaata
    2551  aggaaacgct taggaggcat gttgactaag atagaggacc cgattgaccg
    2601  ctcttgcaac tctcccctgt atatcgggtc tcaatatata gtgagaccca
    2651  aatggcaaaa ttgtaattgt gggaataaat tcaaaatcct cacgctccaa
    2701  aaagcggcca tccgtataat att