Sequence of DPV Mesta yellow vein mosaic virus

Okra enation leaf curl virus [India:Munthal EL32:2006] segment DNA-A, complete sequence.

ACC No: GU112000

Dated: 2012-05-20 | Length: 2723 | CRC: -749710433

                
ID   GU112000; SV 1; circular; genomic DNA; STD; VRL; 2723 BP.
XX
AC   GU112000;
XX
DT   02-JAN-2011 (Rel. 107, Created)
DT   20-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Okra enation leaf curl virus [India:Munthal EL32:2006] segment DNA-A,
DE   complete sequence.
XX
KW   .
XX
OS   Okra enation leaf curl virus [India:Munthal EL32:2006]
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2723
RX   PUBMED; 22447131.
RA   Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S.,
RA   Krishna Reddy M.;
RT   "Molecular characterization of distinct bipartite begomovirus infecting
RT   bhendi (Abelmoschus esculentus L.) in India";
RL   Virus Genes 44(3):522-535(2012).
XX
RN   [2]
RP   1-2723
RA   Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA   Jalali S., Krishnareddy M.;
RT   "Molecular genetic diversity of begomoviruses infecting okra in India";
RL   Unpublished.
XX
RN   [3]
RP   1-2723
RA   Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA   Jalali S., Krishnareddy M.;
RT   ;
RL   Submitted (26-SEP-2009) to the INSDC.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2723
FT                   /organism="Okra enation leaf curl virus [India:Munthal
FT                   EL32:2006]"
FT                   /segment="DNA-A"
FT                   /host="Abelmoschus esculentus (okra)"
FT                   /isolate="EL32"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Munthal, Haryana"
FT                   /isolation_source="leaf"
FT                   /collected_by="M.Krishnareddy"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:908126"
FT   gene            121. .486
FT                   /gene="AV2"
FT   CDS             121. .486
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="precoat protein"
FT                   /db_xref="GOA:E7BNG1"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:E7BNG1"
FT                   /protein_id="ADO40485.1"
FT                   /translation="MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDL
FT                   ISIVRCRNYVEASCRYRHFYPRVEGASSTELRQPVFNPCSCPHCPRHKITNVGQQTHVP
FT                   EAQNVQDIQKSGCSKGM"
FT   gene            281. .1033
FT                   /gene="AV1"
FT   CDS             281. .1033
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7BNG2"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:E7BNG2"
FT                   /protein_id="ADO40486.1"
FT                   /translation="MSKRPADIVISTPASKVRRRLNFDSPYSTRAVAPTVRVTKSRMWA
FT                   NRPMYRKPRMYRIYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR
FT                   VGKRFCVKSLICRENIKTKNHTNSVMFWIVRDRRPTGTPYDFQQVFNVYDNEPSTATVK
FT                   NDQRDRFQVLRRFQATVTGGQYACKEQVPIRKFYRVNNYVVYNHQEAGKYENHTENALL
FT                   LYMACTHASNPVYATLKVRSYFYDSVTN"
FT   gene            complement(1036. .1440)
FT                   /gene="AC3"
FT   CDS             complement(1036. .1440)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:E7BNG3"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:E7BNG3"
FT                   /protein_id="ADO40487.1"
FT                   /translation="MDSRTGERITAAHTRNGVFIWEVPNPLYFKILSHDDRPFTTNMDI
FT                   IKIRIQFNYNLRRALGVHKCFLTFRVWTTLHPQNGIFLRVFKTQVLKYLNNLGVISINL
FT                   VIKAVEHVLYNVIQQTMYVDQYSDIKFDLY"
FT   gene            complement(1133. .1585)
FT                   /gene="AC2"
FT   CDS             complement(1133. .1585)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcription activator protein"
FT                   /db_xref="GOA:E7BNG4"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:E7BNG4"
FT                   /protein_id="ADO40488.1"
FT                   /translation="MRSSSPLKDHCTQVPIKVQHREAKRAHRRKRVDLECGCSYYLSIN
FT                   CFNHGFSHRGTHHCSSYKEWRLYLGGSKSPLFQDPQPRRPSIHDEHGHNKNQDPIQLQP
FT                   SESSGSAQVFSDLPGLDDLTPSEWYFLKGIQNPSPQVSQQSRCNLN"
FT   gene            complement(1482. .2570)
FT                   /gene="AC1"
FT   CDS             complement(1482. .2570)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replicase"
FT                   /db_xref="GOA:E7BNG5"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:E7BNG5"
FT                   /protein_id="ADO40489.1"
FT                   /translation="MPPKRFLINSKNYFLTYPKCSLTKEEALSQIKNFQTPTSKKYIKI
FT                   CRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYID
FT                   KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDYVLQFHN
FT                   LNANLDRIFTPPVEVYVSPFSSSSFDQVPEELEEWAAENVVDAAARPHRPQSIVIEGDS
FT                   RTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHFLKHFKEFMGAQRDWQ
FT                   SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALKNWAVKNAIFVTLEGPLY
FT                   SGTNQSTAQGSEESAQEEESRS"
FT   gene            complement(2114. .2416)
FT                   /gene="AC4"
FT   CDS             complement(2114. .2416)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:E7BNG6"
FT                   /protein_id="ADO40490.1"
FT                   /translation="MGNLICTCSSSSRGNTSARISDSSTWSPQAGQHISIRTYRELNPA
FT                   PTSNPTSTRTGTLSSGESFRSTDDLLEGDNRQPTTLTPQRLTQAVSQRLLESLRS"
XX
SQ   Sequence 2723 BP; 705 A; 576 C; 643 G; 799 T; 0 other;

gu112000 Length: 2723  20-MAY-2012  Type: N  Check: 304  ..

       1  accggatggc cgcgcgattt tttttagtgg tgggtccaga acgcacgacg
      51  atgcagactc aaagcttaga taacgctcct ttcgctataa gtacttgcgc
     101  actaagtttc aaattgaaac atgtgggatc cattgttaaa cgagttccct
     151  gagacggttc acgggtttcg ttgcatgctt gctattaaat atcttcaaca
     201  actgtctgag gaatactctc ctgatacggt tgggtacgat ctaattcgcg
     251  atctaatttc tattgtacgt tgtaggaatt atgtcgaagc gtcctgccga
     301  tatcgtcatt tctacccccg cgtcgaaggt gcgtcgtcga ctgaacttcg
     351  acagcccgta ttcaacccgt gcagttgccc ccactgtccg cgtcacaaaa
     401  tcacgaatgt gggccaacag acccatgtac cggaagccca gaatgtacag
     451  gatatacaga agtccggatg ttccaagggg atgtgaaggc ccatgtaagg
     501  tgcagtcttt tgatgcgaag aacgatattg gtcacatggg taaggttatc
     551  tgtctatctg atgttactag gggtattggg ctgacccatc gagtagggaa
     601  acgtttttgc gtgaagtcat tgatttgcag ggagaacatc aagaccaaga
     651  accatacgaa ttcggtgatg ttttggatcg tgagagacag gcgtcctaca
     701  ggcaccccct acgatttcca gcaagtgttc aatgtttatg acaacgagcc
     751  ttctacggct actgtaaaga acgaccagcg tgatcgattc caggttttga
     801  ggaggtttca ggcgacagtt acaggaggac agtatgcttg taaggaacaa
     851  gttccaatta ggaaattcta tcgtgttaac aattacgtgg tgtataatca
     901  ccaggaagct gggaagtatg aaaatcacac tgagaatgct ttgttgttgt
     951  atatggcatg tactcatgcc tctaaccctg tgtatgctac tttgaaagtt
    1001  aggagttact tctacgattc tgtaacgaat taatattaat aaagatcgaa
    1051  ttttatatct gaatattgat ccacatacat tgtttgttga attacattgt
    1101  acaatacgtg ttctacagcc ttaattacta aattaattga gattacacct
    1151  agattgttga gatacttgag gacttgggtt ttgaataccc ttaagaaaat
    1201  accattctga gggtgtaagg tcgtccagac ccggaaggtc agaaaacact
    1251  tgtgcactcc cagagctctc cgaaggttgt agttgaattg gatcctgatt
    1301  tttattatgt ccatgttcgt cgtgaatgga cggtcgtcgt ggctgaggat
    1351  cttgaaatag aggggatttg gaacctccca gataaagacg ccattccttg
    1401  tatgagctgc agtgatgcgt tcccctgtgc gagaatccat ggttgaagca
    1451  gttaatggat agataataag aacacccgca ttcaagatct actctcttcc
    1501  tcctgtgcgc tctcttcgct tccctgtgct gtactttgat tggtacctga
    1551  gtacaatggt ccttcaaggg tgacgaagat cgcatttttc actgcccagt
    1601  tctttagtgc tgagttctta tcctcgtcta agaactcttt ataactgctg
    1651  ttgggaccag gattgcagag gaagattgtt ggtatgccgc ctttaatttg
    1701  aactggcttt ccgtactttg tgttggattg ccagtccctt tgggccccca
    1751  tgaactcttt aaagtgtttg aggaagtggg gatctacgtc atcaatgacg
    1801  ttataccagg cctcgttact gtagaccttt ggactaaggt ctagatgccc
    1851  acacaaatag ttatgtggac ccagtgatct agcccacatc gtcttcccgg
    1901  tacgactatc tccctcaatc actatacttt gtggtctatg tggccgcgca
    1951  gcggcgtcga caacgttctc ggcagcccat tcctcaagtt cttccggaac
    2001  ttgatcaaaa gaagaagaag aaaaaggaga aacataaacc tccacaggag
    2051  gtgtaaaaat cctatctaaa ttagcattta aattatggaa ttgtaataca
    2101  taatcttttg gagctaactc cttaatgact ctaagagcct ctgacttact
    2151  gcctgcgtta agcgctgcgg cgtaagcgtc gttggctgtc tgttgtcccc
    2201  ctctagcaga tcgtccgtcg atctgaaact ctccccactc gagagtgtcc
    2251  ccgtccttgt cgatgtagga tttgacgtcg gagctggatt tagctccctg
    2301  tatgttcgga tggaaatgtg ctgacctgct tggggagacc aggtcgaaga
    2351  atcgctgatt ctggcacttg tatttcccct cgaactggat gagcacgtgc
    2401  agatgaggtt ccccattttc atgaagttct ctgcagattt taatatattt
    2451  ttttgaagtg ggggtttgga aattcttgat ttgggaaagt gcttcttctt
    2501  tggtgagaga gcacttggga taagtgagga aataattttt ggagttaata
    2551  aggaaacgct taggaggcat gttgactaag atagaggacc cgattgaccg
    2601  ctcttgcaac tctcccctgt atatcgggtc tcaatatata gtgagaccca
    2651  aatggcaaaa ttgtaattgt gggaataaat tcaaaatcct cacgctccaa
    2701  aaagcggcca tccgtataat att