Sequence of DPV Bhendi yellow vein mosaic virus
Bhendi yellow vein mosaic virus [India:Phalaghat:OY07:2005] segment DNA-A, complete sequence.
ACC No: GU112062
Dated: 2012-05-20 | Length: 2741 | CRC: 1543308725
ID GU112062; SV 1; circular; genomic DNA; STD; VRL; 2741 BP.
XX
AC GU112062;
XX
DT 02-JAN-2011 (Rel. 107, Created)
DT 20-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE Bhendi yellow vein mosaic virus [India:Phalaghat:OY07:2005] segment DNA-A,
DE complete sequence.
XX
KW .
XX
OS Bhendi yellow vein mosaic virus [India:Phalaghat:OY07:2005]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2741
RX PUBMED; 22447131.
RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S.,
RA Krishna Reddy M.;
RT "Molecular characterization of distinct bipartite begomovirus infecting
RT bhendi (Abelmoschus esculentus L.) in India";
RL Virus Genes 44(3):522-535(2012).
XX
RN [2]
RP 1-2741
RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA Jalali S., Krishnareddy M.;
RT "Molecular genetic diversity of begomoviruses infecting okra in India";
RL Unpublished.
XX
RN [3]
RP 1-2741
RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA Jalali S., Krishnareddy M.;
RT ;
RL Submitted (01-OCT-2009) to the INSDC.
RL Division of Plant Pathology, Indian Institute of Horticultural Research,
RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2741
FT /organism="Bhendi yellow vein mosaic virus
FT [India:Phalaghat:OY07:2005]"
FT /segment="DNA-A"
FT /host="Abelmoschus esculentus (okra)"
FT /isolate="OY07"
FT /mol_type="genomic DNA"
FT /country="India:Phalaghat, Kerala"
FT /isolation_source="leaf"
FT /collected_by="V.Venkataravanappa"
FT /collection_date="2005"
FT /db_xref="taxon:908103"
FT gene 121. .486
FT /gene="AV2"
FT CDS 121. .486
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /db_xref="GOA:E7BPN8"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:E7BPN8"
FT /protein_id="ADO40912.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT ETQNVPDVQKSGCSKGM"
FT gene 281. .1051
FT /gene="AV1"
FT CDS 281. .1051
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:E7BPN9"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:E7BPN9"
FT /protein_id="ADO40913.1"
FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYAAREQALDKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(629. .985)
FT /gene="AC5"
FT CDS complement(629. .985)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5 protein"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="UniProtKB/TrEMBL:E7BPP0"
FT /protein_id="ADO40914.1"
FT /translation="MGTSHIKHQCILGVILVFSCLLLVVNNIIVNPDKLLVQRLFPSCI
FT LTTSNGCMPFPQHLVPIPMHVLHGRCTGLVIKHIKYFTKILWFICRSSITNKEKHHRIR
FT MVLGLDVLVHPYLT"
FT gene complement(1054. .1458)
FT /gene="AC3"
FT CDS complement(1054. .1458)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /db_xref="GOA:E7BPP1"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:E7BPP1"
FT /protein_id="ADO40915.1"
FT /translation="MDSRTGVRITAAQAKNGVYIWKVPNPLYFKILNHDNRPFTTNMDI
FT ITLRIHFNYNLRKALGIHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVVSINL
FT VIKAVEHVLYNVVNQTMYVDQYSDIQFKLY"
FT gene complement(1151. .1603)
FT /gene="AC2"
FT CDS complement(1151. .1603)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /db_xref="GOA:E7BPP2"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:E7BPP2"
FT /protein_id="ADO40916.1"
FT /translation="MQHSSFSPNRCTRVPIKVQHREAKRRIRRRRVDLECGCSYYLSIN
FT CHNHGFSHRGTHHCSSSKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHNNTQDPFQLQP
FT TESSGNSQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCSFN"
FT gene complement(1500. .2588)
FT /gene="AC1"
FT CDS complement(1500. .2588)
FT /codon_start=1
FT /gene="AC1"
FT /product="replicase"
FT /db_xref="GOA:E7BPP3"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:E7BPP3"
FT /protein_id="ADO40917.1"
FT /translation="MPSKRFQIYSKNYFLTYPKCSLTKEEALSQIQNLHTPTNKKFIKI
FT CRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSVHFHPNIQGAKSSSDVKSYID
FT KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSKALRVIRELAPKDYVLQFHN
FT LNSNLDRIFTPPLEVYVSPFLSSSFDQVPEELEEWVSENVMDAAARPLRPLSLVLEGDS
FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEEKNSALKAWALKNAAFVFLTEPLY
FT SGTNQSTAQRSEETHQEEESRS"
FT gene complement(2132. .2434)
FT /gene="AC4"
FT CDS complement(2132. .2434)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:E7BPP4"
FT /protein_id="ADO40918.1"
FT /translation="MGNLICTCSSSSRANTSARISDSSTWSPQAGQYISIRTFRELNQA
FT QMSSPTSTRTETPSNGESFRSMDDLQEGDSKQPTTLTPQHLTQAVSQRLLESLGS"
XX
SQ Sequence 2741 BP; 731 A; 547 C; 647 G; 816 T; 0 other;
gu112062 Length: 2741 20-MAY-2012 Type: N Check: 8305 ..
1 accggatggc cgcgcgattt ttttaagtgg tgggtccagg acgcacgact
51 atgcagactc aaagcttaga taacgctcct tcggctataa gtacgtgcgc
101 actaagtttc aattcaaaaa atgtgggatc cactattaaa cgaatttccg
151 gatacggttc acgggtttcg ttgtatgcta tctgtaaaat atttgcaact
201 tttgtcgcag gattattctc cagatacgct tgggtacgag ttaatacggg
251 atttaatttg tattttacgc tcccgtaatt atgtcgaagc gagctgccga
301 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg
351 gcagcccata caccagccgt gctgctgccc ccattgtccg cgtcacaaaa
401 caacaggcat ggacaaacag gcctatgaac aggaaaccca gaatgtaccg
451 gatgtacaga agtccggatg ttccaagggg atgtgagggt ccctgtaagg
501 tacagtcgtt tgaatctcga cacgatgtcg ttcatattgg taaggtaatg
551 tgtatttcgg atgttacgcg tggagtcggt ttgacccatc gtataggtaa
601 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg
651 agaacatcaa gaccaagaac catacgaatt cggtgatgtt tttccttgtt
701 cgtgatcgac gaccgacaga taaaccacaa gattttggtg aagtatttaa
751 tatgtttgat aacgagccca gtacagcgac cgtgaagaac atgcataggg
801 atcggtacca ggtgttgagg aaatggcatg caaccgttac tggtggtcaa
851 tatgcagcta gggaacaggc gttggacaag aagtttgtca gggttaacaa
901 ttatgttgtt tacaaccagc aggaggcagg aaaatacgag aatcacaccg
951 agaatgcatt gatgctttat atggcttgta cccatgctag taacccagtg
1001 tatgctacgc ttaagattcg tatttatttt tatgactctg taacgaattg
1051 aaattaataa agtttgaatt gtatatctga atattggtct acatacattg
1101 tttgattaac tacattgtac aatacatgtt caacggcttt aataactaaa
1151 ttaattgaaa ctacaccgag attgttgaga tatttgagga cttgggtttt
1201 gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagattc
1251 ggaaggttag aaaacacttg tgaattccca gagctttccg taggttgtag
1301 ttgaaatgga tcctgagtgt tattatgtcc atgttcgtcg tgaatggacg
1351 gttgtcgtgg ttgaggatct tgaaatagag gggatttgga accttccaga
1401 tatagacgcc attctttgct tgagctgcag tgatgcgtac ccctgtgcga
1451 gaatccatgg ttgtggcagt tgatagagag ataataagaa cacccgcatt
1501 caagatctac tctcctcctc ctgatgcgtc tcttcgcttc tctgtgctgt
1551 actttgattg gtacccgagt acaacggttc ggtgagaaag acgaatgctg
1601 cattttttaa agcccacgct ttcaaagctg agttcttttc ctcgtccaag
1651 aattctttat agcttgcgtt ggggcctgga ttgcagagga agattgttgg
1701 aatgccgcct ttaatttgaa ctggcttccc gtatttggtg tttgattgcc
1751 aatccctttg ggcccccatg aattctttaa agtgtttcag ataatgcggg
1801 tcaacatcat ctataatgtt gaaccacgca tcgtttgaat acactttagg
1851 gcttagatct aggtgaccac ataaatagtt atgtgggcct aatgacctag
1901 cccacatcgt tttgcccgta cgactgtctc cctctaagac taaactcaaa
1951 ggacgcagag gccgcgcagc ggcgtccatg acgttttccg atacccattc
2001 ctcaagttct tctggaactt gatcgaaaga agaagataaa aaaggagaaa
2051 cataaacctc caagggaggt gtaaaaatcc tatctaaatt ggaatttaaa
2101 ttatgaaatt gtaatacata atccttaggt gctaactccc taatgactct
2151 aagagccttt gacttactgc ctgcgttaag tgctgcggcg taagcgtcgt
2201 tggctgtttg ctgtccccct cttgcagatc gtccatcgat ctgaaactct
2251 ccccattcga gggtgtctcc gtccttgtcg atgtaggact tgacatctga
2301 gcttgattta gctccctgaa tgttcggatg gaaatgtact gacctgcttg
2351 gggagaccag gtcgaagaat cgctgattct ggcacttgta tttgccctcg
2401 aactggatga gcacgtgcag atgaggttcc ccattctcgt gaagctctct
2451 gcagatcttg atgaattttt tatttgttgg agtgtgtagg ttttgtattt
2501 gggaaagtgc ctcttcttta gtaagagagc attttggata agtgaggaaa
2551 taatttttgg aatatatttg aaagcgttta gaaggcatgt tgactaaaat
2601 tgagtaccga ttgactcgct ctggcaactc tctctggtat atcggtaccc
2651 aatatatagt gagtaccaaa tggcatatgt gtaattttgc aatgaaattc
2701 aaaatcctca cgctccaaaa agcggccatc cgtataatat t