Sequence of DPV Bhendi yellow vein mosaic virus

Bhendi yellow vein mosaic virus [India:Raichur:OY54B:2005] segment DNA-A, complete sequence.

ACC No: GU112068

Dated: 2012-05-20 | Length: 2742 | CRC: -1448564416

                
ID   GU112068; SV 1; circular; genomic DNA; STD; VRL; 2742 BP.
XX
AC   GU112068;
XX
DT   02-JAN-2011 (Rel. 107, Created)
DT   20-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Bhendi yellow vein mosaic virus [India:Raichur:OY54B:2005] segment DNA-A,
DE   complete sequence.
XX
KW   .
XX
OS   Bhendi yellow vein mosaic virus [India:Raichur:OY54B:2005]
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2742
RX   PUBMED; 22447131.
RA   Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S.,
RA   Krishna Reddy M.;
RT   "Molecular characterization of distinct bipartite begomovirus infecting
RT   bhendi (Abelmoschus esculentus L.) in India";
RL   Virus Genes 44(3):522-535(2012).
XX
RN   [2]
RP   1-2742
RA   Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA   Jalali S., Krishnareddy M.;
RT   "Molecular genetic diversity of begomoviruses infecting okra in India";
RL   Unpublished.
XX
RN   [3]
RP   1-2742
RA   Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA   Jalali S., Krishnareddy M.;
RT   ;
RL   Submitted (01-OCT-2009) to the INSDC.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2742
FT                   /organism="Bhendi yellow vein mosaic virus
FT                   [India:Raichur:OY54B:2005]"
FT                   /segment="DNA-A"
FT                   /host="Abelmoschus esculentus (okra)"
FT                   /isolate="OY54B"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Raichur, Karnataka"
FT                   /isolation_source="leaf"
FT                   /collected_by="V.Venkataravanappa"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:908107"
FT   gene            121. .486
FT                   /gene="AV2"
FT   CDS             121. .486
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="precoat protein"
FT                   /db_xref="GOA:E7BPT0"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:E7BPT0"
FT                   /protein_id="ADO40954.1"
FT                   /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT                   ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT                   ETQNVPDVQKSGCSKGM"
FT   gene            281. .1051
FT                   /gene="AV1"
FT   CDS             281. .1051
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7BPT1"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:E7BPT1"
FT                   /protein_id="ADO40955.1"
FT                   /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIVHIGKVMCISDVTRGVGLTHR
FT                   IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP
FT                   STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   gene            complement(629. .985)
FT                   /gene="AC5"
FT   CDS             complement(629. .985)
FT                   /codon_start=1
FT                   /gene="AC5"
FT                   /product="AC5 protein"
FT                   /db_xref="InterPro:IPR006892"
FT                   /db_xref="UniProtKB/TrEMBL:E7BPT2"
FT                   /protein_id="ADO40956.1"
FT                   /translation="MGTSHIKHQRILRMILIFSCLLLVVNNIIVNPNKFLNQRLFLTRI
FT                   LSTSNGCMPFPQHLVPIPMHVLHGRRTGLVIKHIKYFTKILWFICRSSITNKEKHHRIR
FT                   MVLGLDVLVHPYLT"
FT   gene            complement(1054. .1458)
FT                   /gene="AC3"
FT   CDS             complement(1054. .1458)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:E7BPT3"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:E7BPT3"
FT                   /protein_id="ADO40957.1"
FT                   /translation="MDSRTGARITAAQAKNGVYIWKVPNPLYFKILNHDNRPFTTNMDI
FT                   ITLRIHFNYHLRKALGIHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVVSINL
FT                   VIKAVEHVLYNVINQTMYVDQYSDIKFNLY"
FT   gene            complement(1151. .1603)
FT                   /gene="AC2"
FT   CDS             complement(1151. .1603)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcription activator protein"
FT                   /db_xref="GOA:E7BPT4"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:E7BPT4"
FT                   /protein_id="ADO40958.1"
FT                   /translation="MQHSSFSPNRCTRVPIKVQHREAKRRIRRRRVDLECGCSYYLSIN
FT                   CHNHGFSHRGTHHCSSSKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHNNTQDPFQLPP
FT                   TESSGNTQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCSLN"
FT   gene            complement(1500. .2588)
FT                   /gene="AC1"
FT   CDS             complement(1500. .2588)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replicase"
FT                   /db_xref="GOA:E7BPT5"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:E7BPT5"
FT                   /protein_id="ADO40959.1"
FT                   /translation="MPSKRFQIYSKNYFLTYPKCSLTKEEALSQLQNLQTPTNKKFIKI
FT                   CRELHEDGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSVHFHPNIQGAKSSSDVKSYID
FT                   KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDYVLQFHN
FT                   LNANLDRIFTPPLEVYVSPFLSSSFDQVPEELEEWVSENVMDAAARPLRPLSLVLEGDS
FT                   RTGKTMWARSLGPHNFLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQ
FT                   SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEEKNSALKAWALKNAAFVFLTEPLY
FT                   SGTNQSTTQGSEETHQEEESRS"
FT   gene            complement(2132. .2434)
FT                   /gene="AC4"
FT   CDS             complement(2132. .2434)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:E7BPT6"
FT                   /protein_id="ADO40960.1"
FT                   /translation="MGNLIFTCSSSSRANTSARISDSSTWSPQAGQYISIRTFRELNQA
FT                   QMSSPTSTRTETPSNGESFRSMDDLQEGDSRQPTTLTPQHLTQAVSQRLLESLGS"
XX
SQ   Sequence 2742 BP; 731 A; 543 C; 654 G; 814 T; 0 other;

gu112068 Length: 2742  20-MAY-2012  Type: N  Check: 4138  ..

       1  accggatggc cgcgcgattt ttttaagtgg tgggtccaga acgcacgact
      51  atgcagactc aaagcttaga taacgctcct tcggctataa gtacgtgcgc
     101  actaagtttc aattcaaaaa atgtgggatc cactattaaa tgaatttccg
     151  gatacggttc acgggtttcg ttgtatgcta tctgtaaaat atttgcaact
     201  tttgtcgcag gattattctc cagatacgct tgggtacgag ttaatacggg
     251  atttaatttg tattttacgc tcccgtaatt atgtcgaagc gagctgccga
     301  tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg
     351  gcagcccata caccagccgt gctgctgccc ccattgtccg cgtcacaaaa
     401  caacaggcat ggacaaacag gcctatgaac aggaaaccca gaatgtaccg
     451  gatgtacaga agtccggatg ttccaagggg atgtgagggt ccctgtaagg
     501  tacagtcgtt tgaatctcga cacgatatcg ttcatattgg taaggtaatg
     551  tgtatttcgg atgttacgcg tggagtcggt ttgacccatc gtataggtaa
     601  gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg
     651  agaacatcaa gaccaagaac catacgaatt cggtgatgtt tttccttgtt
     701  cgtgatcgac gaccgacaga taaaccacaa gattttggtg aagtatttaa
     751  tatgtttgat aacgagccca gtacggcgac cgtgaagaac atgcataggg
     801  atcggtacca ggtgttgagg aaatggcatg caaccgttac tggtggacaa
     851  tatgcgagta aggaacaggc gttggttaag aaatttgtta gggttaacaa
     901  ttatgttgtt tacaaccagc aggaggcagg aaaatatgag aatcatacgg
     951  agaatgcgtt gatgctttat atggcttgta cccatgctag caacccagtt
    1001  tatgctacgc tgaagattag gatatatttt tatgactctg taacgaattg
    1051  aaattaataa agattgaatt ttatatctga atattggtct acatacattg
    1101  tttgattaat tacattgtac aagacatgtt cgacggcttt aataactaag
    1151  ttaattgaga ctacaccgag attgttgaga tatttgagga cttgggtttt
    1201  gaataccctt aagaaaagac cagtctgagg gtgtaaggtc gtccagattc
    1251  ggaaggttag aaaacacttg tgtattccca gagctttccg taggtggtag
    1301  ttgaaatgga tcctgagtgt tattatgtcc atgttcgtcg tgaatggacg
    1351  gttgtcgtgg ttgaggatct tgaaatagag gggatttgga accttccaga
    1401  tatagacgcc attctttgct tgagctgcag tgatgcgtgc ccctgtgcga
    1451  gaatccatgg ttgtggcagt tgatagagag ataataagaa cacccgcatt
    1501  caagatctac tctcctcctc ctgatgcgtc tcttcgcttc cctgtgttgt
    1551  actttgattg gtacccgagt acaacggttc ggtgagaaag acgaatgctg
    1601  cattttttaa agcccacgct ttcaaagctg agttcttttc ctcgtccaag
    1651  aattctttat agcttgcgtt ggggcctgga ttgcagagga agattgttgg
    1701  aatgccgcct ttaatttgaa ccggcttccc gtatttggtg tttgattgcc
    1751  agtccctttg ggcccccatg aattctttaa agtgtttcag ataatgcggg
    1801  tcaacatcat ctataatgtt gaaccacgca tcgtttgaat acactttagg
    1851  gcttagatct aggtgaccac acaaaaagtt atgtgggcct agtgacctag
    1901  cccacatagt tttgcccgta cgactatctc cctctaagac taaactcaaa
    1951  ggtctcagag gccgcgcagc ggcgtccatg acgttttccg atacccattc
    2001  ctcaagttct tctggaactt gatcgaaaga agaagataaa aaaggagaaa
    2051  cataaacctc caagggaggt gtaaaaatcc tatctaaatt ggcatttaaa
    2101  ttatgaaatt gtaagacata atccttaggt gctaactccc taatgactct
    2151  aagagcctct gacttactgc ctgcgttaag tgctgcggcg taagcgtcgt
    2201  tggctgtctg ctgtccccct cttgcagatc gtccatcgat ctgaaactct
    2251  ccccattcga gggtgtctcc gtccttgtcg atgtaggact tgacatctga
    2301  gcttgattta gctccctgaa tgttcggatg gaaatgtact gacctgcttg
    2351  gggagaccag gtcgaagaat cgctgattct ggcacttgta tttgccctcg
    2401  aactggatga gcacgtgaag atgaggttcc ccatcctcgt gaagctctct
    2451  gcagatcttg atgaattttt tatttgttgg ggtttgtagg ttttggagtt
    2501  gggaaagtgc ttcctcttta gtaagagagc attttggata agtaaggaaa
    2551  taatttttgg aatatatttg aaagcgttta gaaggcatgt tgactaaaat
    2601  tgagtacccg attgactcgc tctggcaact ctctctggta tatcggtacc
    2651  caatatatag tgagtaccaa atggcatatg tgtaattttg taatgaaatt
    2701  caaaatcctc acgctccaaa aagcggccat ccgtataata tt