Sequence of DPV Sweet potato chlorotic stunt virus

Sweet potato chlorotic stunt virus isolate KTK41 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII) and p7 protein (p7) genes, complete cds.

ACC No: GU127603

Dated: 2013-01-10 | Length: 958 | CRC: -242262811

                
ID   GU127603; SV 1; linear; genomic RNA; STD; VRL; 958 BP.
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AC   GU127603;
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DT   24-OCT-2011 (Rel. 110, Created)
DT   10-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE   Sweet potato chlorotic stunt virus isolate KTK41 RNA-dependent RNA
DE   polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII) and p7
DE   protein (p7) genes, complete cds.
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KW   .
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OS   Sweet potato chlorotic stunt virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Crinivirus.
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RN   [1]
RP   1-958
RA   Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.;
RT   "Natural wild hosts in Uganda, selection pressure, and synergistic
RT   interactions with Sweet potato feathery mottle virus (genus Potyvirus) of
RT   Sweet potato chlorotic stunt virus (genus Crinivirus)";
RL   Unpublished.
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RN   [2]
RP   1-958
RA   Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.;
RT   ;
RL   Submitted (23-OCT-2009) to the INSDC.
RL   Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL   FIN-00014, Finland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .958
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /host="Ipomoea batatas"
FT                   /isolate="KTK41"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Katakwi"
FT                   /collection_date="30-May-2007"
FT                   /db_xref="taxon:81931"
FT   gene            <1. .54
FT                   /gene="RdRp"
FT   CDS             <1. .54
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RNA replication"
FT                   /protein_id="ADQ42428.1"
FT                   /translation="NFSSFRKIFDEFFVVDI"
FT   gene            71. .757
FT                   /gene="RNaseIII"
FT   CDS             71. .757
FT                   /codon_start=1
FT                   /gene="RNaseIII"
FT                   /product="ribonuclease III"
FT                   /note="endonuclease; suppressor of RNA silencing"
FT                   /protein_id="ADQ42429.1"
FT                   /translation="MVPIYSDVSEESKLTVFGSRHRLDSIVHSICTSGDRDRYEILGDW
FT                   AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFYLWLTPDQMQ
FT                   LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFHIKKP
FT                   ARSILEEWAMKNNKRLDIHTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFAV
FT                   EALNLS"
FT   gene            762. .935
FT                   /gene="p7"
FT   CDS             762. .935
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="p7 protein"
FT                   /protein_id="ADQ42430.1"
FT                   /translation="MEYSAIFNECCKECVMFNPKKCRFDVALLWSVIVFFTVNIILLIV
FT                   YFLLSIRIRRSY"
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SQ   Sequence 958 BP; 251 A; 144 C; 211 G; 352 T; 0 other;

gu127603 Length: 958  10-JAN-2013  Type: N  Check: 5226  ..

       1  aatttttcgt cgtttcgtaa gattttcgac gagttctttg ttgttgatat
      51  ttgattttcg accgattatg atggttccga tttattccga cgtttccgag
     101  gaaagcaagc ttactgtctt cggaagtcgt catagattgg attctattgt
     151  acacagcatt tgtacttcag gtgatagaga cagatatgag attttaggtg
     201  attgggctgt cgcatcgtat gtcacgcgta tgctgacaga tctcttcaaa
     251  cataatgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc
     301  taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt
     351  tttatctttg gttgactccc gaccaaatgc agttgtgtag gaagactttc
     401  gccggtggga gaagtttgta tgaggtcaat gttaaattct tagccaacta
     451  ttttgagaga atcgttggtt ggttggttgt gcatgattgt tcagaaagtg
     501  ttgagaagtt tcttgatctt ttcttgaagc ctcatatgtc tttccacatt
     551  aagaaacctg cccgttctat tcttgaagaa tgggctatga agaataacaa
     601  gagacttgac attcatactg gtgagtataa tgtcaacaag gtagtttatg
     651  tcctagtcga cggacaagag gtcagtcggg ctagtgattt gattagtaag
     701  aagagagcaa tttcaaaagc ggtttctttc gctgttgaag ctctaaatct
     751  gagttgaatc catggagtac tctgctattt ttaatgaatg ttgtaaagaa
     801  tgtgtgatgt ttaaccccaa gaaatgtcgc tttgatgtgg cactactttg
     851  gtctgttatt gtattcttta ctgttaatat tattttattg attgtatatt
     901  tccttttaag tattagaatt agaaggtctt attaataatt agggtatttt
     951  tgattaac