Sequence of DPV Sweet potato chlorotic stunt virus
Sweet potato chlorotic stunt virus isolate KTK41 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII) and p7 protein (p7) genes, complete cds.
ACC No: GU127603
Dated: 2013-01-10 | Length: 958 | CRC: -242262811
ID GU127603; SV 1; linear; genomic RNA; STD; VRL; 958 BP. XX AC GU127603; XX DT 24-OCT-2011 (Rel. 110, Created) DT 10-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Sweet potato chlorotic stunt virus isolate KTK41 RNA-dependent RNA DE polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII) and p7 DE protein (p7) genes, complete cds. XX KW . XX OS Sweet potato chlorotic stunt virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Crinivirus. XX RN [1] RP 1-958 RA Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.; RT "Natural wild hosts in Uganda, selection pressure, and synergistic RT interactions with Sweet potato feathery mottle virus (genus Potyvirus) of RT Sweet potato chlorotic stunt virus (genus Crinivirus)"; RL Unpublished. XX RN [2] RP 1-958 RA Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (23-OCT-2009) to the INSDC. RL Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki RL FIN-00014, Finland XX FH Key Location/Qualifiers FH FT source 1. .958 FT /organism="Sweet potato chlorotic stunt virus" FT /host="Ipomoea batatas" FT /isolate="KTK41" FT /mol_type="genomic RNA" FT /country="Uganda:Katakwi" FT /collection_date="30-May-2007" FT /db_xref="taxon:81931" FT gene <1. .54 FT /gene="RdRp" FT CDS <1. .54 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="RNA replication" FT /protein_id="ADQ42428.1" FT /translation="NFSSFRKIFDEFFVVDI" FT gene 71. .757 FT /gene="RNaseIII" FT CDS 71. .757 FT /codon_start=1 FT /gene="RNaseIII" FT /product="ribonuclease III" FT /note="endonuclease; suppressor of RNA silencing" FT /protein_id="ADQ42429.1" FT /translation="MVPIYSDVSEESKLTVFGSRHRLDSIVHSICTSGDRDRYEILGDW FT AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFYLWLTPDQMQ FT LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFHIKKP FT ARSILEEWAMKNNKRLDIHTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFAV FT EALNLS" FT gene 762. .935 FT /gene="p7" FT CDS 762. .935 FT /codon_start=1 FT /gene="p7" FT /product="p7 protein" FT /protein_id="ADQ42430.1" FT /translation="MEYSAIFNECCKECVMFNPKKCRFDVALLWSVIVFFTVNIILLIV FT YFLLSIRIRRSY" XX SQ Sequence 958 BP; 251 A; 144 C; 211 G; 352 T; 0 other; gu127603 Length: 958 10-JAN-2013 Type: N Check: 5226 .. 1 aatttttcgt cgtttcgtaa gattttcgac gagttctttg ttgttgatat 51 ttgattttcg accgattatg atggttccga tttattccga cgtttccgag 101 gaaagcaagc ttactgtctt cggaagtcgt catagattgg attctattgt 151 acacagcatt tgtacttcag gtgatagaga cagatatgag attttaggtg 201 attgggctgt cgcatcgtat gtcacgcgta tgctgacaga tctcttcaaa 251 cataatgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc 301 taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt 351 tttatctttg gttgactccc gaccaaatgc agttgtgtag gaagactttc 401 gccggtggga gaagtttgta tgaggtcaat gttaaattct tagccaacta 451 ttttgagaga atcgttggtt ggttggttgt gcatgattgt tcagaaagtg 501 ttgagaagtt tcttgatctt ttcttgaagc ctcatatgtc tttccacatt 551 aagaaacctg cccgttctat tcttgaagaa tgggctatga agaataacaa 601 gagacttgac attcatactg gtgagtataa tgtcaacaag gtagtttatg 651 tcctagtcga cggacaagag gtcagtcggg ctagtgattt gattagtaag 701 aagagagcaa tttcaaaagc ggtttctttc gctgttgaag ctctaaatct 751 gagttgaatc catggagtac tctgctattt ttaatgaatg ttgtaaagaa 801 tgtgtgatgt ttaaccccaa gaaatgtcgc tttgatgtgg cactactttg 851 gtctgttatt gtattcttta ctgttaatat tattttattg attgtatatt 901 tccttttaag tattagaatt agaaggtctt attaataatt agggtatttt 951 tgattaac