Sequence of DPV Sweet potato chlorotic stunt virus
Sweet potato chlorotic stunt virus isolate BUSH2 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7 protein (p7), and p22 protein (p22) genes, complete cds.
ACC No: GU127638
Dated: 2013-01-10 | Length: 1725 | CRC: 901299320
ID GU127638; SV 1; linear; genomic RNA; STD; VRL; 1725 BP. XX AC GU127638; XX DT 24-OCT-2011 (Rel. 110, Created) DT 10-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Sweet potato chlorotic stunt virus isolate BUSH2 RNA-dependent RNA DE polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7 DE protein (p7), and p22 protein (p22) genes, complete cds. XX KW . XX OS Sweet potato chlorotic stunt virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Crinivirus. XX RN [1] RP 1-1725 RA Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.; RT "Natural wild hosts in Uganda, selection pressure, and synergistic RT interactions with Sweet potato feathery mottle virus (genus Potyvirus) of RT Sweet potato chlorotic stunt virus (genus Crinivirus)"; RL Unpublished. XX RN [2] RP 1-1725 RA Tugume A.K., Amayo R., Mukasa S.B.; RT ; RL Submitted (23-OCT-2009) to the INSDC. RL Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki RL FIN-00014, Finland XX FH Key Location/Qualifiers FH FT source 1. .1725 FT /organism="Sweet potato chlorotic stunt virus" FT /host="Ipomoea tenuirostris" FT /isolate="BUSH2" FT /mol_type="genomic RNA" FT /country="Uganda:Bushenyi" FT /collection_date="08-Jun-2007" FT /db_xref="taxon:81931" FT gene <1. .54 FT /gene="RdRp" FT CDS <1. .54 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="RNA replication" FT /protein_id="ADQ42560.1" FT /translation="NFSSFRKIFDEFFVVDI" FT gene 71. .757 FT /gene="RNaseIII" FT CDS 71. .757 FT /codon_start=1 FT /gene="RNaseIII" FT /product="ribonuclease III" FT /note="endonuclease; suppressor of RNA silencing" FT /protein_id="ADQ42561.1" FT /translation="MVPIYSDVSEESKLTVFGSRHRLDSIVHSICTSGDRDRYEILGDW FT AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFYLWLTPDQMQ FT LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFHIKKP FT ARSILEEWAMKNNKRLDIHTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFAV FT EALNLS" FT gene 762. .935 FT /gene="p7" FT CDS 762. .935 FT /codon_start=1 FT /gene="p7" FT /product="p7 protein" FT /protein_id="ADQ42563.1" FT /translation="MEYSAIFNECCKECVMFNPKKCRFNVALLWSGIGFFTFNIILLFV FT YCLLSIRIRRSY" FT gene 1091. .1666 FT /gene="p22" FT CDS 1091. .1666 FT /codon_start=1 FT /gene="p22" FT /product="p22 protein" FT /protein_id="ADQ42562.1" FT /translation="MSSGAIYSELNRFLKYLRELDFSNFCFSDFLFRFSSLKSLIDEYS FT SHWLVNTNELVWYRTICEQRLHPHLFDANRLLTRINVSDLKHDLIMIRDHFSSIDDFLN FT KYPAIPILVSFTKNISAFLEDNEWESVIHHTDSLNRLVFRESWSDGYGYVNHHRLSASS FT HDFQHMKLCDIFRLSKDKLNSGVFTFLL" XX SQ Sequence 1725 BP; 461 A; 257 C; 362 G; 645 T; 0 other; gu127638 Length: 1725 10-JAN-2013 Type: N Check: 9057 .. 1 aatttttcgt cgtttcgtaa gattttcgac gagttctttg ttgttgatat 51 ttgattttcg actgattatg atggttccga tttattccga cgtttccgag 101 gaaagcaagc ttactgtctt cggaagtcgt catagattgg attctattgt 151 acacagcatt tgtacttcag gtgatagaga cagatatgag attttaggtg 201 attgggctgt cgcatcgtat gtcacgcgta tgctgacaga tctcttcaaa 251 cataatgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc 301 taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt 351 tttatctttg gttgactccc gaccaaatgc agttgtgtag gaagactttc 401 gccggtggga gaagtttgta tgaggtcaat gttaaattct tagccaacta 451 ttttgagaga atcgttggtt ggttggttgt gcatgattgt tcagaaagtg 501 ttgaaaagtt tcttgatctt ttcttgaagc ctcatatgtc tttccacatt 551 aagaaacctg cccgttctat tcttgaagaa tgggctatga agaataacaa 601 gagacttgac attcatactg gtgagtataa tgtcaacaag gtagtttatg 651 tcctagtcga cggacaagag gtcagtcggg ctagtgattt gattagtaag 701 aagagagcaa tttcaaaagc ggtttctttc gctgttgaag ctctaaatct 751 gagttgaatc catggagtac tctgctattt ttaatgaatg ttgtaaagaa 801 tgtgtgatgt ttaaccccaa gaaatgtcgc tttaatgtgg cactactttg 851 gtctggtatt ggattcttta cttttaatat tattttattg tttgtatatt 901 gccttttgag tattagaatt agaaggtctt attaattagt tatcgtagat 951 aagtggaata gagtgaaaaa ctactgtaat tgattattgt gatgtgtcac 1001 aactcacaat ttaattgatt cagtccaacc tgcactagtt tgtggcgagg 1051 gtggttgttc gttcggtttt attatctatt tctttgaacg atgagttctg 1101 gagcaattta ctctgaactt aatcgttttc ttaagtatct tagggagtta 1151 gattttagta atttttgttt tagtgatttt ttgtttcgtt tttcttccct 1201 aaaatcacta atcgatgagt atagtagtca ttggttagta aatacgaatg 1251 aattagtctg gtatagaaca atctgtgagc aacgattgca tcctcatctt 1301 ttcgatgcaa acaggttgtt aacacggata aatgtttcag atttgaagca 1351 tgacttgata atgattcgtg atcatttttc gagtattgat gattttctaa 1401 acaagtatcc ggctatacca attcttgtct cattcaccaa aaatattagt 1451 gcgtttttag aagataatga gtgggaatcc gttattcatc atacggactc 1501 actcaatcgt cttgttttcc gagagtcgtg gtcagacggt tatggttacg 1551 ttaaccacca tcgtctttca gcgtcgtcgc atgattttca acatatgaag 1601 ttatgtgaca tttttcgttt gtcgaaggat aagttgaaca gtggtgtgtt 1651 cactttcctt ctttaatgtt ttcttttagt atattaataa aaatcgataa 1701 agatattagg gtagatttga ttaat