Sequence of DPV Sweet potato chlorotic stunt virus

Sweet potato chlorotic stunt virus isolate BUSH2 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7 protein (p7), and p22 protein (p22) genes, complete cds.

ACC No: GU127638

Dated: 2013-01-10 | Length: 1725 | CRC: 901299320

                
ID   GU127638; SV 1; linear; genomic RNA; STD; VRL; 1725 BP.
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AC   GU127638;
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DT   24-OCT-2011 (Rel. 110, Created)
DT   10-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE   Sweet potato chlorotic stunt virus isolate BUSH2 RNA-dependent RNA
DE   polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7
DE   protein (p7), and p22 protein (p22) genes, complete cds.
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KW   .
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OS   Sweet potato chlorotic stunt virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Crinivirus.
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RN   [1]
RP   1-1725
RA   Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.;
RT   "Natural wild hosts in Uganda, selection pressure, and synergistic
RT   interactions with Sweet potato feathery mottle virus (genus Potyvirus) of
RT   Sweet potato chlorotic stunt virus (genus Crinivirus)";
RL   Unpublished.
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RN   [2]
RP   1-1725
RA   Tugume A.K., Amayo R., Mukasa S.B.;
RT   ;
RL   Submitted (23-OCT-2009) to the INSDC.
RL   Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL   FIN-00014, Finland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1725
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /host="Ipomoea tenuirostris"
FT                   /isolate="BUSH2"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Bushenyi"
FT                   /collection_date="08-Jun-2007"
FT                   /db_xref="taxon:81931"
FT   gene            <1. .54
FT                   /gene="RdRp"
FT   CDS             <1. .54
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RNA replication"
FT                   /protein_id="ADQ42560.1"
FT                   /translation="NFSSFRKIFDEFFVVDI"
FT   gene            71. .757
FT                   /gene="RNaseIII"
FT   CDS             71. .757
FT                   /codon_start=1
FT                   /gene="RNaseIII"
FT                   /product="ribonuclease III"
FT                   /note="endonuclease; suppressor of RNA silencing"
FT                   /protein_id="ADQ42561.1"
FT                   /translation="MVPIYSDVSEESKLTVFGSRHRLDSIVHSICTSGDRDRYEILGDW
FT                   AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFYLWLTPDQMQ
FT                   LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFHIKKP
FT                   ARSILEEWAMKNNKRLDIHTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFAV
FT                   EALNLS"
FT   gene            762. .935
FT                   /gene="p7"
FT   CDS             762. .935
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="p7 protein"
FT                   /protein_id="ADQ42563.1"
FT                   /translation="MEYSAIFNECCKECVMFNPKKCRFNVALLWSGIGFFTFNIILLFV
FT                   YCLLSIRIRRSY"
FT   gene            1091. .1666
FT                   /gene="p22"
FT   CDS             1091. .1666
FT                   /codon_start=1
FT                   /gene="p22"
FT                   /product="p22 protein"
FT                   /protein_id="ADQ42562.1"
FT                   /translation="MSSGAIYSELNRFLKYLRELDFSNFCFSDFLFRFSSLKSLIDEYS
FT                   SHWLVNTNELVWYRTICEQRLHPHLFDANRLLTRINVSDLKHDLIMIRDHFSSIDDFLN
FT                   KYPAIPILVSFTKNISAFLEDNEWESVIHHTDSLNRLVFRESWSDGYGYVNHHRLSASS
FT                   HDFQHMKLCDIFRLSKDKLNSGVFTFLL"
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SQ   Sequence 1725 BP; 461 A; 257 C; 362 G; 645 T; 0 other;

gu127638 Length: 1725  10-JAN-2013  Type: N  Check: 9057  ..

       1  aatttttcgt cgtttcgtaa gattttcgac gagttctttg ttgttgatat
      51  ttgattttcg actgattatg atggttccga tttattccga cgtttccgag
     101  gaaagcaagc ttactgtctt cggaagtcgt catagattgg attctattgt
     151  acacagcatt tgtacttcag gtgatagaga cagatatgag attttaggtg
     201  attgggctgt cgcatcgtat gtcacgcgta tgctgacaga tctcttcaaa
     251  cataatgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc
     301  taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt
     351  tttatctttg gttgactccc gaccaaatgc agttgtgtag gaagactttc
     401  gccggtggga gaagtttgta tgaggtcaat gttaaattct tagccaacta
     451  ttttgagaga atcgttggtt ggttggttgt gcatgattgt tcagaaagtg
     501  ttgaaaagtt tcttgatctt ttcttgaagc ctcatatgtc tttccacatt
     551  aagaaacctg cccgttctat tcttgaagaa tgggctatga agaataacaa
     601  gagacttgac attcatactg gtgagtataa tgtcaacaag gtagtttatg
     651  tcctagtcga cggacaagag gtcagtcggg ctagtgattt gattagtaag
     701  aagagagcaa tttcaaaagc ggtttctttc gctgttgaag ctctaaatct
     751  gagttgaatc catggagtac tctgctattt ttaatgaatg ttgtaaagaa
     801  tgtgtgatgt ttaaccccaa gaaatgtcgc tttaatgtgg cactactttg
     851  gtctggtatt ggattcttta cttttaatat tattttattg tttgtatatt
     901  gccttttgag tattagaatt agaaggtctt attaattagt tatcgtagat
     951  aagtggaata gagtgaaaaa ctactgtaat tgattattgt gatgtgtcac
    1001  aactcacaat ttaattgatt cagtccaacc tgcactagtt tgtggcgagg
    1051  gtggttgttc gttcggtttt attatctatt tctttgaacg atgagttctg
    1101  gagcaattta ctctgaactt aatcgttttc ttaagtatct tagggagtta
    1151  gattttagta atttttgttt tagtgatttt ttgtttcgtt tttcttccct
    1201  aaaatcacta atcgatgagt atagtagtca ttggttagta aatacgaatg
    1251  aattagtctg gtatagaaca atctgtgagc aacgattgca tcctcatctt
    1301  ttcgatgcaa acaggttgtt aacacggata aatgtttcag atttgaagca
    1351  tgacttgata atgattcgtg atcatttttc gagtattgat gattttctaa
    1401  acaagtatcc ggctatacca attcttgtct cattcaccaa aaatattagt
    1451  gcgtttttag aagataatga gtgggaatcc gttattcatc atacggactc
    1501  actcaatcgt cttgttttcc gagagtcgtg gtcagacggt tatggttacg
    1551  ttaaccacca tcgtctttca gcgtcgtcgc atgattttca acatatgaag
    1601  ttatgtgaca tttttcgttt gtcgaaggat aagttgaaca gtggtgtgtt
    1651  cactttcctt ctttaatgtt ttcttttagt atattaataa aaatcgataa
    1701  agatattagg gtagatttga ttaat