Sequence of DPV Sweet potato chlorotic stunt virus
Sweet potato chlorotic stunt virus isolate TOR14 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7 protein (p7), and p22 protein (p22) genes, complete cds.
ACC No: GU127648
Dated: 2013-01-10 | Length: 1724 | CRC: -839627815
ID GU127648; SV 1; linear; genomic RNA; STD; VRL; 1724 BP.
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AC GU127648;
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DT 24-OCT-2011 (Rel. 110, Created)
DT 10-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE Sweet potato chlorotic stunt virus isolate TOR14 RNA-dependent RNA
DE polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7
DE protein (p7), and p22 protein (p22) genes, complete cds.
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KW .
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OS Sweet potato chlorotic stunt virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Crinivirus.
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RN [1]
RP 1-1724
RA Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.;
RT "Natural wild hosts in Uganda, selection pressure, and synergistic
RT interactions with Sweet potato feathery mottle virus (genus Potyvirus) of
RT Sweet potato chlorotic stunt virus (genus Crinivirus)";
RL Unpublished.
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RN [2]
RP 1-1724
RA Tugume A.K., Amayo R., Mukasa S.B.;
RT ;
RL Submitted (23-OCT-2009) to the INSDC.
RL Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL FIN-00014, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .1724
FT /organism="Sweet potato chlorotic stunt virus"
FT /host="Ipomoea batatas"
FT /isolate="TOR14"
FT /mol_type="genomic RNA"
FT /country="Uganda:Tororo"
FT /collection_date="18-May-2007"
FT /db_xref="taxon:81931"
FT gene <1. .54
FT /gene="RdRp"
FT CDS <1. .54
FT /codon_start=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /note="RNA replication"
FT /protein_id="ADQ42600.1"
FT /translation="NFSSFRKIFDEFFVVDI"
FT gene 71. .757
FT /gene="RNaseIII"
FT CDS 71. .757
FT /codon_start=1
FT /gene="RNaseIII"
FT /product="ribonuclease III"
FT /note="endonuclease; suppressor of RNA silencing"
FT /protein_id="ADQ42601.1"
FT /translation="MEPIYSDVSEESKLTVFGSRHRLDSIVHSICTSDDRDRYEILGDW
FT AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFNLWLTPDQMQ
FT LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFHIKKP
FT ARSILEEWAMKNNKRLDIHTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFAV
FT EALNLS"
FT gene 762. .935
FT /gene="p7"
FT CDS 762. .935
FT /codon_start=1
FT /gene="p7"
FT /product="p7 protein"
FT /protein_id="ADQ42603.1"
FT /translation="MEYSAIFNECCKECVMFNPKKCRFDVALLWSFIGFFTFNIILLFV
FT FCLLSIRIRRSY"
FT gene 1090. .1665
FT /gene="p22"
FT CDS 1090. .1665
FT /codon_start=1
FT /gene="p22"
FT /product="p22 protein"
FT /protein_id="ADQ42602.1"
FT /translation="MSSGAIYSELNRFLKYLRELDFSNFCFSDFLFRFSSLKSLIDEYS
FT SHWLVNTNELVWYRTICEQRLHPHLFDANRLLSRINVSDLKHDLIMIRDHFSSIDDFLN
FT KYPAIPILVSFTKNISAFLEDNEWESVIHHTDSLNRLVFRESWSDGYGYVNHHRLSASS
FT HDFQHMKLCDIFRLSKDKLNSGVFTFLL"
FT 3'UTR 1666. .>1724
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SQ Sequence 1724 BP; 463 A; 259 C; 358 G; 644 T; 0 other;
gu127648 Length: 1724 10-JAN-2013 Type: N Check: 9804 ..
1 aatttttcgt cgtttcgtaa gattttcgac gagttctttg tagttgatat
51 ttgattttca accgattatg atggaaccga tttattccga cgtttccgag
101 gaaagcaaac ttactgtctt cggaagtcgt catagattgg attctattgt
151 acacagcatt tgtacttcag atgatagaga cagatatgag attttaggtg
201 attgggctgt cgcatcgtat gtcacacgta tgctgacaga tctcttcaaa
251 cataatgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc
301 taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt
351 ttaatctttg gttgactccc gaccaaatgc agttgtgtag gaagactttc
401 gccggtggga gaagtctgta tgaggtcaat gttaaattct tagccaacta
451 ttttgagaga atcgttggtt ggttggttgt gcatgattgt tcagaaagtg
501 ttgagaagtt tcttgatctt ttcttgaagc ctcatatgtc tttccacatt
551 aagaaacctg cccgttctat tcttgaagaa tgggccatga agaataacaa
601 gagacttgac attcatactg gtgagtataa tgtcaacaag gtagtttatg
651 tcttagtcga cggacaagag gtcagtcggg ctagtgattt gattagtaag
701 aagagagcaa tttcaaaagc ggtttctttc gctgttgaag ctctaaatct
751 gagttgaatc catggagtac tctgctattt ttaatgaatg ttgtaaagaa
801 tgtgtgatgt ttaaccccaa gaaatgtcgc tttgatgtgg cactactttg
851 gtcttttatt ggattcttta cttttaatat tattttattg tttgtatttt
901 gccttttgag tattagaatt agaaggtctt attaattagt tatcgtagat
951 aagtggaata gagtgaaaac tactgtaatt gattattgtg atgtgtcaca
1001 actcacaatt taattgattc agtccaacct gcactagttt gtggcgaggg
1051 tggttgttcg ttcggtttta ttatctattt ctttgaacga tgagttctgg
1101 agcaatttac tctgaactta atcgttttct taagtatctt agggagttag
1151 attttagtaa tttttgtttt agtgattttt tgtttcgttt ttcttcccta
1201 aaatcactaa tcgatgagta tagtagtcat tggttagtaa atacgaatga
1251 attagtctgg tatagaacaa tctgtgagca acgattgcat cctcatcttt
1301 tcgatgcaaa caggttgtta tcacggataa atgtttcaga tttgaagcat
1351 gacttgataa tgattcgtga tcatttttcg agtattgatg attttctaaa
1401 caagtatccg gctataccaa ttcttgtctc attcaccaaa aatattagtg
1451 cgtttttaga agataatgag tgggaatccg ttattcatca tacggactca
1501 ctcaatcgtc ttgttttccg agagtcgtgg tcagacggtt atggttacgt
1551 taaccaccat cgtctttcag cgtcgtcgca tgattttcaa catatgaagt
1601 tatgtgatat ttttcgtttg tcgaaggata agttgaacag tggtgttttc
1651 actttccttc tttaatgttt tcttttagta gattaataca aatcgataaa
1701 gatattaggg tagatttgat taat