Sequence of DPV Tomato yellow leaf curl virus

Tomato yellow leaf curl virus - Israel strain Australia:Bundaberg1:2006 segment DNA A, complete sequence.

ACC No: GU178817

Dated: 2010-07-02 | Length: 2781 | CRC: -70247996

                
ID   GU178817; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC   GU178817;
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DT   02-JUL-2010 (Rel. 105, Created)
DT   02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE   Tomato yellow leaf curl virus - Israel strain Australia:Bundaberg1:2006
DE   segment DNA A, complete sequence.
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KW   .
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OS   Tomato yellow leaf curl virus - Israel
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2781
RA   Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W.,
RA   Thomas J.E.;
RT   "Tomato yellow leaf curl virus in australia: distribution, detection and
RT   discovery of naturally occurring defective DNA molecules";
RL   Unpublished.
XX
RN   [2]
RP   1-2781
RA   Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W.,
RA   Thomas J.E.;
RT   ;
RL   Submitted (05-NOV-2009) to the EMBL/GenBank/DDBJ databases.
RL   Horticulture and Forestry Science, Queensland Primary Industries and
RL   Fisheries, Indooroopilly Research Centre, 80 Meiers Road, Brisbane,
RL   Queensland 4068, Australia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2781
FT                   /organism="Tomato yellow leaf curl virus - Israel"
FT                   /segment="DNA A"
FT                   /host="Solanum lycopersicum"
FT                   /strain="Australia:Bundaberg1:2006"
FT                   /isolate="BRIP49041"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia:Bundaberg, Queensland"
FT                   /collected_by="D. M. Persley"
FT                   /collection_date="05-Apr-2006"
FT                   /identified_by="D. M. Persley"
FT                   /note="TYLCV-IL[AU:Bun1:06]"
FT                   /db_xref="taxon:66366"
FT   gene            148. .498
FT                   /gene="V1"
FT   CDS             148. .498
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="capsid protein"
FT                   /note="CP"
FT                   /protein_id="ADI56616.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT                   ISVVRARDYVEANRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT                   PEAQNIQNVSKP"
FT   gene            308. .1084
FT                   /gene="V2"
FT   CDS             308. .1084
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="movement protein"
FT                   /note="MP"
FT                   /protein_id="ADI56615.1"
FT                   /translation="MSKRTGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT                   TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT                   RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT                   EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT   gene            complement(1081. .1485)
FT                   /gene="C3"
FT   CDS             complement(1081. .1485)
FT                   /codon_start=1
FT                   /gene="C3"
FT                   /product="replication enhancer protein"
FT                   /note="Ren"
FT                   /protein_id="ADI56617.1"
FT                   /translation="MDSRTGELITAPQAENGVFIWEINNPFYFKITEHRQRPFLMNHDI
FT                   ISIQIRFNHNIRKALWIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISIKN
FT                   VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT   gene            complement(1226. .1633)
FT                   /gene="C2"
FT   CDS             complement(1226. .1633)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="transcriptional activator protein"
FT                   /note="TrAP"
FT                   /protein_id="ADI56618.1"
FT                   /translation="MQSSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT                   NCNNHGFTHRGTHHCSSSREWRFYLGDKQSLLFQDNRTQTEAISNEPRHHFHSDKIQPQ
FT                   HQEGIVDSQMLSQLPNLDDITASDWSFLKSI"
FT   gene            complement(1542. .2615)
FT                   /gene="C1"
FT   CDS             complement(1542. .2615)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="replication initiation protein"
FT                   /protein_id="ADI56619.1"
FT                   /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT                   RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT                   DGDFIDFGVFQIDSRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT                   SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELDEWVAENVVSSAARPWRPISIVIEGDSR
FT                   TGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT                   NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNAIFVTLYEPLFA
FT                   SINQGPTQDSQEETNKA"
FT   gene            complement(2171. .2464)
FT                   /gene="C4"
FT   CDS             complement(2171. .2464)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /protein_id="ADI56620.1"
FT                   /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT                   QMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
XX
SQ   Sequence 2781 BP; 759 A; 528 C; 610 G; 884 T; 0 other;

gu178817 Length: 2781  02-JUL-2010  Type: N  Check: 3962  ..

       1  accggatggc cgcgcctttt ctttttatgt ggtccccacg agggttccac
      51  agatgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
     101  ttcatttgtc tttatatact tggtccccaa gtagtctgtc ttgcaatatg
     151  tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
     201  tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca
     251  atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
     301  cgtgactatg tcgaagcgaa caggcgatat aatcatttcc acgcccgcct
     351  cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
     401  gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
     451  gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg
     501  ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
     551  gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
     601  tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
     651  tatatttttt aggtaaagtc tggatggatg aaaatatcaa gaagcagaat
     701  cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccctatgg
     751  aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc
     801  ccagtaccgc aactgtgaag aatgatttgc gggataggtt tcaagtgatg
     851  aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
     901  ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc
     951  atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
    1001  tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
    1051  acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
    1101  tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat
    1151  acatgatcaa ctgctctgat tacattttta attgaaatta caccaagact
    1201  atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag
    1251  tctgaggctg taatgtcgtc caaattcgga agttgagaaa gcatttgtga
    1301  atccacaatg ccttcctgat gttgtggttg aatcttatct gaatggaaat
    1351  gatgtcgtgg ttcattagaa atggcctctg tctgtgttct gttatcttga
    1401  aatagaaggg attgtttatc tcccagataa aaacgccatt ctctgcttga
    1451  ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga
    1501  tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
    1551  attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga
    1601  acagtggctc gtagagggtg acgaagattg cattcttgag agcccaattt
    1651  ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt
    1701  aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
    1751  tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
    1801  aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
    1851  gtaccacaca tcattactgt acacctttgg gcttaggtct agatgtccac
    1901  ataaataatt atgtgggcct agagacctgg cccacattgt tttgcctgtt
    1951  ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
    2001  ggaagatacg acgttctcgg cgacccactc gtcaagttca tctggaactt
    2051  gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
    2101  ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
    2151  gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
    2201  ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ctgacctcct
    2251  ctagctgatc tgctatcgat ttggaaaact ccaaaatcaa tgaagtctcc
    2301  gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
    2351  tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
    2401  cgttggttct tacattggta tttgccttcg aattggataa gcacatggag
    2451  atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt
    2501  tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta
    2551  gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
    2601  aaataaacga ggcatgttga aatgaattgg tgtccctcag agctctatgg
    2651  caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt
    2701  ggtaattttg taaaagtaca ttgcaattca aaattcaaaa ttcaaaaatc
    2751  aaatcaataa agcggccatc cgtataatat t