Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - Israel strain Australia:Bundaberg2:2006 segment DNA A, complete sequence.
ACC No: GU178819
Dated: 2010-07-02 | Length: 2781 | CRC: 360604117
ID GU178819; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC GU178819; XX DT 02-JUL-2010 (Rel. 105, Created) DT 02-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Tomato yellow leaf curl virus - Israel strain Australia:Bundaberg2:2006 DE segment DNA A, complete sequence. XX KW . XX OS Tomato yellow leaf curl virus - Israel OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W., RA Thomas J.E.; RT "Tomato yellow leaf curl virus in australia: distribution, detection and RT discovery of naturally occurring defective DNA molecules"; RL Unpublished. XX RN [2] RP 1-2781 RA Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W., RA Thomas J.E.; RT ; RL Submitted (05-NOV-2009) to the EMBL/GenBank/DDBJ databases. RL Horticulture and Forestry Science, Queensland Primary Industries and RL Fisheries, Indooroopilly Research Centre, 80 Meiers Road, Brisbane, RL Queensland 4068, Australia XX FH Key Location/Qualifiers FH FT source 1. .2781 FT /organism="Tomato yellow leaf curl virus - Israel" FT /segment="DNA A" FT /host="Solanum lycopersicum cv. Cherry" FT /strain="Australia:Bundaberg2:2006" FT /isolate="BRIP49053" FT /mol_type="genomic DNA" FT /country="Australia:Bundaberg, Queensland" FT /collected_by="D. M. Persley" FT /collection_date="11-Apr-2006" FT /identified_by="D. M. Persley" FT /note="TYLCV-IL[AU:Bun2:06]" FT /db_xref="taxon:66366" FT gene 148. .498 FT /gene="V1" FT CDS 148. .498 FT /codon_start=1 FT /gene="V1" FT /product="capsid protein" FT /note="CP" FT /protein_id="ADI56628.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT gene 308. .1084 FT /gene="V2" FT CDS 308. .1084 FT /codon_start=1 FT /gene="V2" FT /product="movement protein" FT /note="MP" FT /protein_id="ADI56627.1" FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1081. .1485) FT /gene="C3" FT CDS complement(1081. .1485) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /note="Ren" FT /protein_id="ADI56629.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPFYFKITEHRQRPFLMNHDI FT ISIQIRFNHNIRKALGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISIKN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1226. .1633) FT /gene="C2" FT CDS complement(1226. .1633) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activator protein" FT /note="TrAP" FT /protein_id="ADI56630.1" FT /translation="MQSSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSLLFQDNRTQTEAISNEPRHHFHSDKIQPQ FT HQEGIGDSQMLSQLPNLDDITASDWSFLKSI" FT gene complement(1542. .2615) FT /gene="C1" FT CDS complement(1542. .2615) FT /codon_start=1 FT /gene="C1" FT /product="replication initiation protein" FT /protein_id="ADI56631.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDSRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELDEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNAIFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT gene complement(2171. .2464) FT /gene="C4" FT CDS complement(2171. .2464) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /protein_id="ADI56632.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 757 A; 530 C; 610 G; 884 T; 0 other; gu178819 Length: 2781 02-JUL-2010 Type: N Check: 4134 .. 1 accggatggc cgcgcctttt ctttttatgt ggtccccacg agggttccac 51 agatgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg 101 ttcatttgtc tttatatact tggtccccaa gtagtctgtc ttgcaatatg 151 tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg 201 tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca 251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgcct 351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct 401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag 451 gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg 501 ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg 551 gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga 651 tatatttttt aggtaaagtc tggatggatg aaaatatcaa gaagcagaat 701 cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccctatgg 751 aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc 801 ccagtaccgc aactgtgaag aatgatttgc gggataggtt tcaagtgatg 851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 901 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc 951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg 1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat 1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta 1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat 1151 acatgatcaa ctgctctgat tacattttta attgaaatta caccaagact 1201 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag 1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa gcatttgtga 1301 atccccaatg ccttcctgat gttgtggttg aatcttatct gaatggaaat 1351 gatgtcgtgg ttcattagaa atggcctctg tctgtgttct gttatcttga 1401 aatagaaggg attgtttatc tcccagataa aaacgccatt ctctgcttga 1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1501 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt 1551 attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga 1601 acagtggctc gtagagggtg acgaagattg cattcttgag agcccaattt 1651 ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt 1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa 1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt 1851 gtaccacaca tcattactgt acacctttgg gcttaggtct agatgtccac 1901 ataaataatt atgtgggcct agagacctgg cccacattgt tttgcctgtt 1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc 2001 ggaagatacg acgttctcgg cgacccactc gtcaagttca tctggaactt 2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata 2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc 2201 ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ctgacctcct 2251 ctagctgatc tgctatcgat ttggaaaact ccaaaatcaa tgaagtctcc 2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa 2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac 2401 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag 2451 atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt 2501 tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta 2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt 2601 aaataaacga ggcatgttga aatgaattgg tgtccctcag agctctatgg 2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt 2701 ggtaattttg taaaagtaca ttgcaattca aaattcaaaa ttcaaaaatc 2751 aaatcaataa agcggccatc cgtataatat t