Sequence of DPV Turdivirus 1
Turdivirus 1 strain 00356, complete genome.
ACC No: GU182406
Dated: 2010-09-21 | Length: 8035 | CRC: -816356323
ID GU182406; SV 1; linear; genomic RNA; STD; VRL; 8035 BP.
XX
AC GU182406;
XX
DT 16-AUG-2010 (Rel. 105, Created)
DT 21-SEP-2010 (Rel. 106, Last updated, Version 2)
XX
DE Turdivirus 1 strain 00356, complete genome.
XX
KW .
XX
OS Turdivirus 1
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Picornaviridae; Orthoturdivirus.
XX
RN [1]
RP 1-8035
RX PUBMED; 20554801.
RA Woo P.C., Lau S.K., Huang Y., Lam C.S., Poon R.W., Tsoi H.W., Lee P.,
RA Tse H., Chan A.S., Luk G., Chan K.H., Yuen K.Y.;
RT "Comparative analysis of six genome sequences of three novel
RT picornaviruses, turdiviruses 1, 2 and 3, in dead wild birds, and proposal
RT of two novel genera, Orthoturdivirus and Paraturdivirus, in the family
RT Picornaviridae";
RL J. Gen. Virol. 91(PT 10):2433-2448(2010).
XX
RN [2]
RP 1-8035
RA Woo P.C., Lau S.K., Huang Y., Lam C.S., Poon R.W., Tsoi H.W., Lee P.,
RA Tse H., Luk G., Dyrting K.C., Chan K.H., Yuen K.Y.;
RT ;
RL Submitted (07-NOV-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbiology, The University of Hong Kong, University
RL Pathology Building, Queen Mary Hospital, Hong Kong, P.R.China
XX
FH Key Location/Qualifiers
FH
FT source 1. .8035
FT /organism="Turdivirus 1"
FT /host="Pale Thrush"
FT /strain="00356"
FT /mol_type="genomic RNA"
FT /country="Hong Kong"
FT /collection_date="11-Jan-2007"
FT /db_xref="taxon:871699"
FT CDS 416. .7702
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="ADL38957.1"
FT /translation="MAHRSRPFPADPKTETQILNHLHFAITTLHRDPNYTPPCTTRLPV
FT RIHKAAWAFHAFGYRCTLVGFEPSTPWTLKEVKQVLPETLFQEECHAFPLPSPTIQGFT
FT YLTPDPIFADVLRRVRSGDFTVFQSDNAKVSGVDDDYTLIYSFGPHTARYTIPRSRPWL
FT TSMEFVPSKQGQTITNIYGDGNWVTSSTGANGWSPSVNTNLADGTITSTNTGSPAPQNP
FT NGPSNSSRPNKPRMSTLGRVNDQLAQERIRTLRAGSIGMDIPSQAPITQPLDIPPRADV
FT SYLGEPFRPGPQVDRFWEVSHAKWNLSDTGLLTWDTSALQSTLAAPCTKHANFGSGTHL
FT NFPYSILNSQPGTAISNAFSTHSYWRGDALIQVTVNSSPQASGVLLVAAIPEGVDVLTP
FT QSATHYPFTLLNLATTNCCALLLPFLSPNPVDPCGLHFQWNVVALPITPLRVPAGTPSF
FT LDVSCMMAPQDSEFFAMKTPAQQGVKVRETSATGNAYVTSCSAGTSIPALPYIPSNPPT
FT TYVPGRTTNYMGLANQPGLMALVDIGMDSPVGTKLLCQKIDPISLTTPISGTLTPLGQT
FT LTHFSQWRGTLDIDLVFSGSQQNTGRILVSTTPPVAGCPATMEAAMRNTCYIWDLTTSA
FT SISITIPYFSSTPWKTLSRSTSLSLSVNQLAGWLGLYVYSPLSCPAFNPDQATIAVFIR
FT GGADFEARIPSGLATATIQGDEEVPASSNDGLNTLELRPSSDGPESMSVAAYYSSFSPI
FT SLYSTPSSQRNPSIPITSYPYALPLDPTHLIAGGTSNYVCPSLSTLLFREFTYLSADLE
FT IDIVFTPGGDSDLPRDVDVYVIPPGCTIPANPNPVTLSGFPSAGWREMTEDRAHVTLSV
FT PFSAENPVIASRYLGFPSYESSQSLATSLYSFGTLLITSPYFQNPLGTAYAEISLRFVN
FT LQAFLPRPLSFNTLPDTQTYTAPAYVAARRQAGGILRTSPEPCFVIRNQRLTYVHWALR
FT SGNKQVSIQRSGLGGLTPVIGYEDLEGEVYAEVPPHIFALAEAQVGSEYPYSATNNCTT
FT WVETLTNLSLPNTGNSLALGLGAIGVGAAAALAVKTAEAKKQGLSEVSRNANATAESLQ
FT RAAHIAHDAVSKAEKIASSVSLPSSTDALRAAAADMKVAANLIAGSIKDAGDIVDRVSP
FT VIDSLASTADNAVQGFLKILAKLIGYIMILFGSPTPLSVAGLLVVIASDFAPAVVQYFK
FT NVGNPLAALYYWIARKLGLESVTAKDAVDAAPTLSQLSSEPTPVQTPPQPTRQGVKEYN
FT DGVNALKNTEWLIKKIFEYIKDLLEWLGVRAKSEPSAQLAQSHDTIMALFQDSISATSA
FT PSLDLPAARSNLAKAQSLLPLATAAKSNTHSHILTQSIKNYTNAIASQEALLAPPRPEP
FT YVLYLYGKPGSGKSVFAQALARTLAYHLCGDPESVYAPSSSDCAYYDGYAQQCVHYIDD
FT VGQDPEGKDWKDFAQLVSTSPFIVPMASLEKKGMLYNSKVIILTSNFSEPNPRASRIPQ
FT ALQRRLKCMIEIEPLSCPTQSNLHTLSSLPNQFNPETALRVDGPATRYFANDCPMLRFE
FT AFRLTSNHGFKHADDIVRHVLDKVKNSGGISNALAALIPGVKPLARQQAGDEVPISKAP
FT TCFTNPSYIPGSTEDLSWDPTDIQSSVPTPEVVAVKSNDIGLLKKIWKYKKPLIATATF
FT LSILASVTVLFTSLYTTFRSRSQPQGAYAGMPLVREGTVYHGAYSGLPLSSAPASTRPK
FT ASPRPLRQGLQECDIALSRNVVTVTSYDETSGKMLQLNGLALFDRWVATVTHIKLDRPM
FT TVDINGCSYPVTRHVVHGEIAAVYAPKMPQVRDIRRFIRAPRMHHVGTVIANSTSGPVF
FT MLANNVKHGDTPYPDLTGLTQVYTYDTPSYDGLCGAPLILHHPASPTVVGIHEAGVAGV
FT SGVAIPLLPLLEKIPLPTQQSVITPLPMPGPGVHIPRRSRLRPSPAMGAFPVEKIPAAL
FT SSHDKRLPEGVDVDTVAFSKQNRGDLDKPWPTLPVAVDLYFSQCDFPKLRMLSMDEAIN
FT GTPLLDGLDMKQSAGYPWSLTTNRRSLFTQDPETGKYKPVPELEEAVLACLENPDYFYT
FT TMLKDELRPTEKALAGKTRLIEAAPIHAIIAGRMLLGGLFEHMHARPGQYGSAVGCDPD
FT YHWTPFFHSFDRFAEVWALDYSCFDSTLPSCAFDLIAAKLSQIITPLPGIAEDAIVKYI
FT RSISVSKHVFGDRAYLMTGGNPSGCVGTSILNSMINNSVLISAFLTHPQFNPAEMRILT
FT YGDDVLYATTPTIHPSFVKSFFDQNTTLIVTPATKAGDFPDHSTIWDVTFLKRWFVPDE
FT ERPWYIHPVIEPATYEQSVMWTRGGDFQDVVTSLSFLAHHAGPTNYDAWATKVREQAAR
FT KGLLPNILPYSYLHHRWLQLVVS"
FT mat_peptide 416. .934
FT /product="L"
FT mat_peptide 935. .1858
FT /product="VP0"
FT mat_peptide 1859. .2554
FT /product="VP3"
FT mat_peptide 2555. .3298
FT /product="VP1"
FT mat_peptide 3299. .3685
FT /product="2A"
FT mat_peptide 3686. .4249
FT /product="2B"
FT mat_peptide 4250. .5296
FT /product="2C"
FT mat_peptide 5297. .5581
FT /product="3A"
FT mat_peptide 5582. .5707
FT /product="3B"
FT mat_peptide 5708. .6274
FT /product="3C"
FT mat_peptide 6275. .7699
FT /product="3D"
XX
SQ Sequence 8035 BP; 1592 A; 2987 C; 1667 G; 1789 T; 0 other;
gu182406 Length: 8035 21-SEP-2010 Type: N Check: 4468 ..
1 tcctcaccca tgcttttcct acccccacca cgcccgcatg tttactgctt
51 tccttgatgc tgcccgtgac tacttccatg acctccccaa cccaaacctc
101 aaacgcctta agctatcatg ggctctctat caccaatccc cttccttccc
151 acccagaacc cccccctccc tcccctacaa cgtgtatgag caagacgagt
201 ttgacaagct cgccgaagcc atgctcaccc actctccctt ccccacatcc
251 cattacctct tccaccccct cccgtccaac gcccgcacca tcgtcgagcg
301 tgaggctgac tgggatggct gtgatctaga aaagaaatgg ctcgacctcg
351 tcatagagga cgatgccaag ttccttctgg agaacggctc tctcccgttt
401 ggctccaccc ttgccatggc gcaccgctcc cgcccctttc ctgctgaccc
451 caaaaccgaa acccaaatcc taaaccatct ccactttgct atcaccactc
501 tccaccgtga ccccaactac acccccccct gcacaacccg cctccccgtc
551 cgcattcaca aagctgcctg ggccttccac gcgttcggct accgctgcac
601 gctggttggt tttgaaccct ccactccgtg gactctcaaa gaagtgaaac
651 aggttctacc tgagacactt ttccaggaag aatgccatgc tttccccctc
701 ccaagcccca ccatccaagg cttcacctac ctcactcccg accctatctt
751 cgctgatgtc ctacgccgcg tccgaagtgg ggacttcaca gtcttccaat
801 cggacaacgc taaggtttcc ggcgtcgatg atgactacac cctcatctac
851 tcctttggcc cccacaccgc ccgctacacc atcccccgct cccgtccctg
901 gctcacctcc atggaatttg tcccttccaa acaggggcag accatcacca
951 acatctatgg agatgggaac tgggtaacct cctccacagg agcgaatggc
1001 tggtcgccgt cggtcaacac caacctggct gacggaacca tcacatccac
1051 taacactgga tcgccagccc cccagaatcc caatgggcct tccaactcct
1101 cccgccccaa caaaccccgt atgtccaccc ttggtcgtgt caacgatcag
1151 ctcgcccaag agcgcatccg cactcttcgg gccggctcca ttggcatgga
1201 catcccctcc caagccccca tcacccaacc cctagacatc cctccccgcg
1251 ccgacgtctc ctacctcggc gagccgttca gacctggccc ccaggtcgac
1301 cgcttctggg aggtttcaca cgccaagtgg aatctctcag acaccggctt
1351 gctgacgtgg gacacgtccg ccctccagtc caccctagcc gccccctgca
1401 ccaaacatgc taactttggc tctggaaccc acctcaactt cccttactcc
1451 atcctcaatt cccaacctgg cactgctatc tccaacgctt tcagcaccca
1501 ttcctattgg cgcggagacg ccctcattca ggttaccgtc aacagttcac
1551 cacaagccag tggtgtgctg cttgttgctg caatacctga aggcgtcgat
1601 gtgttgaccc ctcaatccgc aacccactac cccttcaccc tgctgaacct
1651 cgctaccacc aattgctgtg cccttctcct tcccttcctg tcccctaatc
1701 ccgtggaccc ctgcggcctc cactttcagt ggaacgtcgt agccctcccc
1751 atcacccccc ttcgcgtccc tgccggaacc ccctctttcc tggacgtctc
1801 gtgcatgatg gctcctcagg actctgagtt ctttgcgatg aagacccctg
1851 cccaacaagg tgtcaaagtc cgcgaaacct cagctactgg gaacgcctat
1901 gtcacgagct gctccgccgg cacctccatc cccgctctcc cctacattcc
1951 ttccaacccc cccaccacct acgtccctgg cagaaccacg aactatatgg
2001 gcctggcaaa ccagccaggt ctaatggctc ttgtggatat tggcatggac
2051 tcccctgtgg gaaccaagct actctgtcag aaaattgacc ccatctctct
2101 caccaccccg atctctggga ccctaacccc cctaggccaa acccttaccc
2151 acttctccca atggcgagga accctggata ttgatctggt cttctccgga
2201 tcacagcaga acactggccg catcctggtg tccaccacac ctccagtggc
2251 tggatgcccc gcgaccatgg aagctgctat gcgcaacacc tgctacatct
2301 gggacctcac cacctccgcc tccatctcca tcaccatccc ctacttttcc
2351 tccaccccat ggaaaaccct ctcccgctcc acttccctat ccctctcggt
2401 caaccagctg gctggttggc tggggctcta tgtctactcc cccctttcct
2451 gccctgcttt caaccctgat caggcaacca ttgccgtgtt catccgcggt
2501 ggtgccgatt tcgaggccag aattccgtct ggtctcgcga ccgccaccat
2551 ccagggtgat gaggaggtcc ccgcctcctc aaacgacggt ctgaacacct
2601 tggagctcag accttcaagt gacggacccg agtccatgtc agtggctgcc
2651 tactactcat ccttctctcc aatctctctc tactctaccc cttcctccca
2701 acgcaatcca tccattccca tcacgtccta cccctacgcc cttcccctgg
2751 accccaccca cctcatagca ggaggcacct ccaattatgt gtgcccttcc
2801 ctctctactc tcctcttccg cgaatttacg tacttgtctg ctgatctgga
2851 aatcgacatc gtcttcactc caggaggcga tagcgatctt cccagagatg
2901 ttgatgtgta tgtgattccc cctggctgca ccatccccgc caaccccaac
2951 cctgtcaccc tctccggctt cccctccgct ggctggaggg aaatgacgga
3001 ggatcgtgct cacgtcaccc tctccgttcc cttctctgct gaaaatcccg
3051 tgattgcctc ccgctatcta ggtttcccct cttacgaatc atcccaatcc
3101 cttgccactt ccctctactc ctttggcacc cttctaatca cctctcccta
3151 tttccaaaac cccttaggta ctgcatatgc tgaaatctcc ctccgctttg
3201 tcaacctaca ggccttcctc ccccgccccc tttccttcaa caccctccct
3251 gatacccaaa cctacactgc cccagcctat gttgccgcaa ggcgacaggc
3301 tggtgggatc ctgcgcactt cacctgaacc gtgcttcgtt atccgcaacc
3351 agcggctaac gtatgtacac tgggccctcc gctccggaaa caagcaggtc
3401 tcaatccaga gatctggctt gggcgggctt acgcccgtca tcggctatga
3451 ggacctagaa ggtgaggtct acgcagaggt cccccctcac atcttcgccc
3501 tggctgaagc gcaagttgga agcgagtacc cctactccgc aaccaacaac
3551 tgcaccacct gggtggagac cctgaccaac ctctccctcc ccaacaccgg
3601 caattcgctt gccctcggat tgggcgccat cggcgtggga gccgctgctg
3651 ccttagccgt gaaaacagct gaggctaaga aacaaggctt gtctgaggtt
3701 tcgcgtaatg cgaacgccac agccgagtct ttgcagcgag ccgctcacat
3751 cgcccatgac gccgtctcca aggccgagaa aattgcttcc tctgtctccc
3801 tcccctcctc cactgatgct ctccgggctg ccgccgcaga catgaaagtg
3851 gccgcgaact tgatcgccgg gtcgattaag gacgccgggg atatcgttga
3901 ccgcgtgtcg cctgtgattg actcactggc ttcaaccgcg gacaatgctg
3951 tccaaggctt cctgaaaatc ctggccaagc tgatcggcta tataatgatc
4001 ctgttcggta gccccacccc tctctccgtt gccggtctcc ttgtcgtgat
4051 cgcctccgac tttgctcctg ccgtagtcca gtatttcaag aacgtcggga
4101 atccactcgc cgctctctac tactggattg cacgcaagct aggtctggaa
4151 agcgtgaccg ccaaggacgc cgtcgatgct gccccaaccc tctcccagct
4201 ttcctctgaa cccacccccg tccaaacccc accccagccc acccgacaag
4251 gcgtgaagga gtacaacgac ggagtgaacg ctctcaagaa tactgaatgg
4301 ctaatcaaaa agatctttga atacatcaag gacctgcttg aatggctcgg
4351 tgttcgcgct aagagtgaac cctccgccca actggcccag agtcacgaca
4401 ccatcatggc tctgttccag gactccatct ccgccacctc ggccccctcc
4451 ctggaccttc ctgctgcccg ttccaacctc gccaaagccc aatccctgct
4501 tcccctggcc accgcagcaa aatccaacac ccactcccac atcctcaccc
4551 aatcaatcaa gaattacact aatgcaattg cctctcaaga agccctcctg
4601 gccccaccac gccccgaacc ctatgtcctc tacctctatg gcaagcctgg
4651 ctccggtaag tctgtgttcg cacaggctct ggcccgcaca ctggcctatc
4701 acctctgtgg tgatcccgag tctgtctacg ccccctcctc gagcgactgc
4751 gcctactatg atggatacgc gcagcaatgc gtgcattaca tcgatgatgt
4801 aggccaagac cccgagggga aggactggaa agactttgcc cagcttgtct
4851 ccacctcccc tttcatcgtc cctatggctt ctcttgagaa gaaaggaatg
4901 ctttataatt caaaagtgat cattctcacc tccaacttct ctgagcccaa
4951 ccctcgcgct tcccgcatcc cccaagccct gcaacgccgc ttgaaatgca
5001 tgattgaaat tgaacccctc tcctgcccca cccaatccaa cctccacacc
5051 ctctcctccc tccccaacca attcaaccca gaaaccgccc tccgtgttga
5101 tggccccgca actcgttact ttgccaacga ctgccccatg ctccggttcg
5151 aagcgtttcg cctgacgtca aaccatggct tcaagcacgc tgacgacatc
5201 gtgaggcacg tccttgacaa ggtgaagaat tccgggggca ttagcaatgc
5251 cctggccgcg ctgatcccgg gcgtcaagcc gcttgcacgc cagcaagctg
5301 gtgacgaagt ccccatcagc aaggccccca cctgcttcac caacccttct
5351 tacattcccg gatctactga agatctgagt tgggacccga ccgacatcca
5401 gtcatcggtt cccactcccg aagttgtcgc cgtcaaaagc aacgacatcg
5451 gacttctgaa gaagatctgg aagtataaga agcccctcat tgctactgct
5501 accttcctct ccatcctcgc ctcggttact gtcctcttca cctccctcta
5551 caccaccttc cgctcccgct cccagcccca gggcgcctac gcaggcatgc
5601 ccctcgttcg cgaggggact gtctaccatg gcgcttactc cggtctcccc
5651 ctttcttccg cccccgcctc cactcgcccc aaggcctcgc cgcgccctct
5701 ccgacagggg ttgcaggaat gtgacatcgc gctctcgcgc aatgttgtga
5751 ctgtgacttc ctacgacgag actagtggta agatgctcca actcaacggg
5801 ctcgccctct ttgatcggtg ggtcgcaacc gtgactcaca tcaagctgga
5851 ccgcccaatg actgtggaca tcaatggctg ctcctaccct gtcacccgcc
5901 atgtggtgca tggtgagatc gctgccgtct atgctccaaa gatgccccag
5951 gtgcgtgaca tccgtcgctt tatccgggct ccaaggatgc atcatgtcgg
6001 taccgtgatt gccaactcca cctctggccc tgtgttcatg ttggccaaca
6051 acgtgaagca cggtgacaca ccctaccctg accttaccgg tctcactcag
6101 gtctacacgt atgacactcc gtcgtatgat ggcctgtgtg gggcacccct
6151 tatcctccac caccccgctt cccccacagt ggtgggtatc cacgaagctg
6201 gcgtcgctgg cgtcagtgga gtggctatcc cgctgctgcc cctccttgaa
6251 aagatccctc tccccaccca gcaatccgta atcactcccc tccccatgcc
6301 tggccccggc gtccacatcc cccgccgctc ccgcctccgc ccctccccgg
6351 ccatgggtgc ctttcctgtt gagaaaatcc ctgctgctct gtcaagtcat
6401 gacaagcgtc tgcctgaggg agtcgacgtt gacaccgtcg cattctcgaa
6451 gcagaacagg ggtgacctcg acaagccctg gcccaccctc cccgttgctg
6501 ttgatcttta cttttcccag tgtgatttcc ccaagctacg catgctgtcg
6551 atggacgagg ctatcaacgg aactccactc cttgacggtc tcgatatgaa
6601 gcagtctgct ggctacccct ggtccctcac caccaaccgc cgttccctct
6651 tcacgcaaga ccctgagact ggaaagtaca agcctgtccc ggaacttgag
6701 gaagccgtcc tggcgtgcct cgagaacccg gactacttct acacgaccat
6751 gttgaaggat gagctgagac caacggaaaa ggctctggct ggcaaaactc
6801 gtctgatcga ggctgcgccc atccatgcga tcatcgctgg acgcatgctg
6851 ctcggaggtc tcttcgaaca catgcacgcg cgccctggcc agtacgggtc
6901 tgctgtcggc tgtgatcccg actaccattg gactccgttc ttccactcct
6951 ttgaccggtt tgcagaagtt tgggctctgg actactcctg tttcgactct
7001 actctcccct cctgcgcttt cgacctaatc gctgctaaac tctctcaaat
7051 catcactcct ctccccggca ttgccgagga tgccatcgtg aagtacatcc
7101 ggtccattag cgtgtccaag cacgtttttg gcgatcgggc gtatctgatg
7151 accggtggca acccctctgg ctgtgttgga acctcaatcc tcaactccat
7201 gattaataac tctgtcctga tctctgcttt cctcacccac ccccagttca
7251 accctgcgga gatgcgcatc ctcacctacg gtgacgacgt gctctacgcc
7301 accaccccca ccatccaccc ttccttcgtc aaatccttct tcgatcagaa
7351 caccacccta atcgtgaccc ctgccactaa ggccggtgac ttcccggatc
7401 actccacgat ctgggacgtt accttcctga agcgctggtt cgtccccgac
7451 gaagagcgcc cgtggtacat ccaccccgtg attgaacccg ccacttacga
7501 gcagtctgtc atgtggacca gagggggaga tttccaagat gtggtaacct
7551 ccctctcttt ccttgcgcat catgctggac ccaccaacta tgatgcctgg
7601 gcgaccaagg tccgcgagca ggccgctcgc aaggggctcc tccccaacat
7651 cctcccctac tcctatctcc accaccgctg gctccagctg gtggtctctt
7701 aagtctgtgc cttccaagcg tgttggaagt aaagccacgc cggctcgccc
7751 ccgtcatagg gcaacccccg agtaccggtg gtctcgggtc tgctgctaaa
7801 cccagtgggc tcgttgccgt cccccattgc cggatctcca tactcgggta
7851 cacctccaag cattttctgt gatataaaga cctggaaaat tggcttttcc
7901 tccaggaccc taagcagaaa gtgcccccgt gctctttttc aattggcaaa
7951 ctcataggtt ggcccgcctc tctctgggcc ctcccttccc tgtgtcttga
8001 aatttggaaa atttcttgca aaaaaaaaaa aaaaa