Sequence of DPV Turdivirus 1
Turdivirus 1 strain 00356, complete genome.
ACC No: GU182406
Dated: 2010-09-21 | Length: 8035 | CRC: -816356323
ID GU182406; SV 1; linear; genomic RNA; STD; VRL; 8035 BP. XX AC GU182406; XX DT 16-AUG-2010 (Rel. 105, Created) DT 21-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Turdivirus 1 strain 00356, complete genome. XX KW . XX OS Turdivirus 1 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; OC Picornaviridae; Orthoturdivirus. XX RN [1] RP 1-8035 RX PUBMED; 20554801. RA Woo P.C., Lau S.K., Huang Y., Lam C.S., Poon R.W., Tsoi H.W., Lee P., RA Tse H., Chan A.S., Luk G., Chan K.H., Yuen K.Y.; RT "Comparative analysis of six genome sequences of three novel RT picornaviruses, turdiviruses 1, 2 and 3, in dead wild birds, and proposal RT of two novel genera, Orthoturdivirus and Paraturdivirus, in the family RT Picornaviridae"; RL J. Gen. Virol. 91(PT 10):2433-2448(2010). XX RN [2] RP 1-8035 RA Woo P.C., Lau S.K., Huang Y., Lam C.S., Poon R.W., Tsoi H.W., Lee P., RA Tse H., Luk G., Dyrting K.C., Chan K.H., Yuen K.Y.; RT ; RL Submitted (07-NOV-2009) to the EMBL/GenBank/DDBJ databases. RL Department of Microbiology, The University of Hong Kong, University RL Pathology Building, Queen Mary Hospital, Hong Kong, P.R.China XX FH Key Location/Qualifiers FH FT source 1. .8035 FT /organism="Turdivirus 1" FT /host="Pale Thrush" FT /strain="00356" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /collection_date="11-Jan-2007" FT /db_xref="taxon:871699" FT CDS 416. .7702 FT /codon_start=1 FT /product="polyprotein" FT /protein_id="ADL38957.1" FT /translation="MAHRSRPFPADPKTETQILNHLHFAITTLHRDPNYTPPCTTRLPV FT RIHKAAWAFHAFGYRCTLVGFEPSTPWTLKEVKQVLPETLFQEECHAFPLPSPTIQGFT FT YLTPDPIFADVLRRVRSGDFTVFQSDNAKVSGVDDDYTLIYSFGPHTARYTIPRSRPWL FT TSMEFVPSKQGQTITNIYGDGNWVTSSTGANGWSPSVNTNLADGTITSTNTGSPAPQNP FT NGPSNSSRPNKPRMSTLGRVNDQLAQERIRTLRAGSIGMDIPSQAPITQPLDIPPRADV FT SYLGEPFRPGPQVDRFWEVSHAKWNLSDTGLLTWDTSALQSTLAAPCTKHANFGSGTHL FT NFPYSILNSQPGTAISNAFSTHSYWRGDALIQVTVNSSPQASGVLLVAAIPEGVDVLTP FT QSATHYPFTLLNLATTNCCALLLPFLSPNPVDPCGLHFQWNVVALPITPLRVPAGTPSF FT LDVSCMMAPQDSEFFAMKTPAQQGVKVRETSATGNAYVTSCSAGTSIPALPYIPSNPPT FT TYVPGRTTNYMGLANQPGLMALVDIGMDSPVGTKLLCQKIDPISLTTPISGTLTPLGQT FT LTHFSQWRGTLDIDLVFSGSQQNTGRILVSTTPPVAGCPATMEAAMRNTCYIWDLTTSA FT SISITIPYFSSTPWKTLSRSTSLSLSVNQLAGWLGLYVYSPLSCPAFNPDQATIAVFIR FT GGADFEARIPSGLATATIQGDEEVPASSNDGLNTLELRPSSDGPESMSVAAYYSSFSPI FT SLYSTPSSQRNPSIPITSYPYALPLDPTHLIAGGTSNYVCPSLSTLLFREFTYLSADLE FT IDIVFTPGGDSDLPRDVDVYVIPPGCTIPANPNPVTLSGFPSAGWREMTEDRAHVTLSV FT PFSAENPVIASRYLGFPSYESSQSLATSLYSFGTLLITSPYFQNPLGTAYAEISLRFVN FT LQAFLPRPLSFNTLPDTQTYTAPAYVAARRQAGGILRTSPEPCFVIRNQRLTYVHWALR FT SGNKQVSIQRSGLGGLTPVIGYEDLEGEVYAEVPPHIFALAEAQVGSEYPYSATNNCTT FT WVETLTNLSLPNTGNSLALGLGAIGVGAAAALAVKTAEAKKQGLSEVSRNANATAESLQ FT RAAHIAHDAVSKAEKIASSVSLPSSTDALRAAAADMKVAANLIAGSIKDAGDIVDRVSP FT VIDSLASTADNAVQGFLKILAKLIGYIMILFGSPTPLSVAGLLVVIASDFAPAVVQYFK FT NVGNPLAALYYWIARKLGLESVTAKDAVDAAPTLSQLSSEPTPVQTPPQPTRQGVKEYN FT DGVNALKNTEWLIKKIFEYIKDLLEWLGVRAKSEPSAQLAQSHDTIMALFQDSISATSA FT PSLDLPAARSNLAKAQSLLPLATAAKSNTHSHILTQSIKNYTNAIASQEALLAPPRPEP FT YVLYLYGKPGSGKSVFAQALARTLAYHLCGDPESVYAPSSSDCAYYDGYAQQCVHYIDD FT VGQDPEGKDWKDFAQLVSTSPFIVPMASLEKKGMLYNSKVIILTSNFSEPNPRASRIPQ FT ALQRRLKCMIEIEPLSCPTQSNLHTLSSLPNQFNPETALRVDGPATRYFANDCPMLRFE FT AFRLTSNHGFKHADDIVRHVLDKVKNSGGISNALAALIPGVKPLARQQAGDEVPISKAP FT TCFTNPSYIPGSTEDLSWDPTDIQSSVPTPEVVAVKSNDIGLLKKIWKYKKPLIATATF FT LSILASVTVLFTSLYTTFRSRSQPQGAYAGMPLVREGTVYHGAYSGLPLSSAPASTRPK FT ASPRPLRQGLQECDIALSRNVVTVTSYDETSGKMLQLNGLALFDRWVATVTHIKLDRPM FT TVDINGCSYPVTRHVVHGEIAAVYAPKMPQVRDIRRFIRAPRMHHVGTVIANSTSGPVF FT MLANNVKHGDTPYPDLTGLTQVYTYDTPSYDGLCGAPLILHHPASPTVVGIHEAGVAGV FT SGVAIPLLPLLEKIPLPTQQSVITPLPMPGPGVHIPRRSRLRPSPAMGAFPVEKIPAAL FT SSHDKRLPEGVDVDTVAFSKQNRGDLDKPWPTLPVAVDLYFSQCDFPKLRMLSMDEAIN FT GTPLLDGLDMKQSAGYPWSLTTNRRSLFTQDPETGKYKPVPELEEAVLACLENPDYFYT FT TMLKDELRPTEKALAGKTRLIEAAPIHAIIAGRMLLGGLFEHMHARPGQYGSAVGCDPD FT YHWTPFFHSFDRFAEVWALDYSCFDSTLPSCAFDLIAAKLSQIITPLPGIAEDAIVKYI FT RSISVSKHVFGDRAYLMTGGNPSGCVGTSILNSMINNSVLISAFLTHPQFNPAEMRILT FT YGDDVLYATTPTIHPSFVKSFFDQNTTLIVTPATKAGDFPDHSTIWDVTFLKRWFVPDE FT ERPWYIHPVIEPATYEQSVMWTRGGDFQDVVTSLSFLAHHAGPTNYDAWATKVREQAAR FT KGLLPNILPYSYLHHRWLQLVVS" FT mat_peptide 416. .934 FT /product="L" FT mat_peptide 935. .1858 FT /product="VP0" FT mat_peptide 1859. .2554 FT /product="VP3" FT mat_peptide 2555. .3298 FT /product="VP1" FT mat_peptide 3299. .3685 FT /product="2A" FT mat_peptide 3686. .4249 FT /product="2B" FT mat_peptide 4250. .5296 FT /product="2C" FT mat_peptide 5297. .5581 FT /product="3A" FT mat_peptide 5582. .5707 FT /product="3B" FT mat_peptide 5708. .6274 FT /product="3C" FT mat_peptide 6275. .7699 FT /product="3D" XX SQ Sequence 8035 BP; 1592 A; 2987 C; 1667 G; 1789 T; 0 other; gu182406 Length: 8035 21-SEP-2010 Type: N Check: 4468 .. 1 tcctcaccca tgcttttcct acccccacca cgcccgcatg tttactgctt 51 tccttgatgc tgcccgtgac tacttccatg acctccccaa cccaaacctc 101 aaacgcctta agctatcatg ggctctctat caccaatccc cttccttccc 151 acccagaacc cccccctccc tcccctacaa cgtgtatgag caagacgagt 201 ttgacaagct cgccgaagcc atgctcaccc actctccctt ccccacatcc 251 cattacctct tccaccccct cccgtccaac gcccgcacca tcgtcgagcg 301 tgaggctgac tgggatggct gtgatctaga aaagaaatgg ctcgacctcg 351 tcatagagga cgatgccaag ttccttctgg agaacggctc tctcccgttt 401 ggctccaccc ttgccatggc gcaccgctcc cgcccctttc ctgctgaccc 451 caaaaccgaa acccaaatcc taaaccatct ccactttgct atcaccactc 501 tccaccgtga ccccaactac acccccccct gcacaacccg cctccccgtc 551 cgcattcaca aagctgcctg ggccttccac gcgttcggct accgctgcac 601 gctggttggt tttgaaccct ccactccgtg gactctcaaa gaagtgaaac 651 aggttctacc tgagacactt ttccaggaag aatgccatgc tttccccctc 701 ccaagcccca ccatccaagg cttcacctac ctcactcccg accctatctt 751 cgctgatgtc ctacgccgcg tccgaagtgg ggacttcaca gtcttccaat 801 cggacaacgc taaggtttcc ggcgtcgatg atgactacac cctcatctac 851 tcctttggcc cccacaccgc ccgctacacc atcccccgct cccgtccctg 901 gctcacctcc atggaatttg tcccttccaa acaggggcag accatcacca 951 acatctatgg agatgggaac tgggtaacct cctccacagg agcgaatggc 1001 tggtcgccgt cggtcaacac caacctggct gacggaacca tcacatccac 1051 taacactgga tcgccagccc cccagaatcc caatgggcct tccaactcct 1101 cccgccccaa caaaccccgt atgtccaccc ttggtcgtgt caacgatcag 1151 ctcgcccaag agcgcatccg cactcttcgg gccggctcca ttggcatgga 1201 catcccctcc caagccccca tcacccaacc cctagacatc cctccccgcg 1251 ccgacgtctc ctacctcggc gagccgttca gacctggccc ccaggtcgac 1301 cgcttctggg aggtttcaca cgccaagtgg aatctctcag acaccggctt 1351 gctgacgtgg gacacgtccg ccctccagtc caccctagcc gccccctgca 1401 ccaaacatgc taactttggc tctggaaccc acctcaactt cccttactcc 1451 atcctcaatt cccaacctgg cactgctatc tccaacgctt tcagcaccca 1501 ttcctattgg cgcggagacg ccctcattca ggttaccgtc aacagttcac 1551 cacaagccag tggtgtgctg cttgttgctg caatacctga aggcgtcgat 1601 gtgttgaccc ctcaatccgc aacccactac cccttcaccc tgctgaacct 1651 cgctaccacc aattgctgtg cccttctcct tcccttcctg tcccctaatc 1701 ccgtggaccc ctgcggcctc cactttcagt ggaacgtcgt agccctcccc 1751 atcacccccc ttcgcgtccc tgccggaacc ccctctttcc tggacgtctc 1801 gtgcatgatg gctcctcagg actctgagtt ctttgcgatg aagacccctg 1851 cccaacaagg tgtcaaagtc cgcgaaacct cagctactgg gaacgcctat 1901 gtcacgagct gctccgccgg cacctccatc cccgctctcc cctacattcc 1951 ttccaacccc cccaccacct acgtccctgg cagaaccacg aactatatgg 2001 gcctggcaaa ccagccaggt ctaatggctc ttgtggatat tggcatggac 2051 tcccctgtgg gaaccaagct actctgtcag aaaattgacc ccatctctct 2101 caccaccccg atctctggga ccctaacccc cctaggccaa acccttaccc 2151 acttctccca atggcgagga accctggata ttgatctggt cttctccgga 2201 tcacagcaga acactggccg catcctggtg tccaccacac ctccagtggc 2251 tggatgcccc gcgaccatgg aagctgctat gcgcaacacc tgctacatct 2301 gggacctcac cacctccgcc tccatctcca tcaccatccc ctacttttcc 2351 tccaccccat ggaaaaccct ctcccgctcc acttccctat ccctctcggt 2401 caaccagctg gctggttggc tggggctcta tgtctactcc cccctttcct 2451 gccctgcttt caaccctgat caggcaacca ttgccgtgtt catccgcggt 2501 ggtgccgatt tcgaggccag aattccgtct ggtctcgcga ccgccaccat 2551 ccagggtgat gaggaggtcc ccgcctcctc aaacgacggt ctgaacacct 2601 tggagctcag accttcaagt gacggacccg agtccatgtc agtggctgcc 2651 tactactcat ccttctctcc aatctctctc tactctaccc cttcctccca 2701 acgcaatcca tccattccca tcacgtccta cccctacgcc cttcccctgg 2751 accccaccca cctcatagca ggaggcacct ccaattatgt gtgcccttcc 2801 ctctctactc tcctcttccg cgaatttacg tacttgtctg ctgatctgga 2851 aatcgacatc gtcttcactc caggaggcga tagcgatctt cccagagatg 2901 ttgatgtgta tgtgattccc cctggctgca ccatccccgc caaccccaac 2951 cctgtcaccc tctccggctt cccctccgct ggctggaggg aaatgacgga 3001 ggatcgtgct cacgtcaccc tctccgttcc cttctctgct gaaaatcccg 3051 tgattgcctc ccgctatcta ggtttcccct cttacgaatc atcccaatcc 3101 cttgccactt ccctctactc ctttggcacc cttctaatca cctctcccta 3151 tttccaaaac cccttaggta ctgcatatgc tgaaatctcc ctccgctttg 3201 tcaacctaca ggccttcctc ccccgccccc tttccttcaa caccctccct 3251 gatacccaaa cctacactgc cccagcctat gttgccgcaa ggcgacaggc 3301 tggtgggatc ctgcgcactt cacctgaacc gtgcttcgtt atccgcaacc 3351 agcggctaac gtatgtacac tgggccctcc gctccggaaa caagcaggtc 3401 tcaatccaga gatctggctt gggcgggctt acgcccgtca tcggctatga 3451 ggacctagaa ggtgaggtct acgcagaggt cccccctcac atcttcgccc 3501 tggctgaagc gcaagttgga agcgagtacc cctactccgc aaccaacaac 3551 tgcaccacct gggtggagac cctgaccaac ctctccctcc ccaacaccgg 3601 caattcgctt gccctcggat tgggcgccat cggcgtggga gccgctgctg 3651 ccttagccgt gaaaacagct gaggctaaga aacaaggctt gtctgaggtt 3701 tcgcgtaatg cgaacgccac agccgagtct ttgcagcgag ccgctcacat 3751 cgcccatgac gccgtctcca aggccgagaa aattgcttcc tctgtctccc 3801 tcccctcctc cactgatgct ctccgggctg ccgccgcaga catgaaagtg 3851 gccgcgaact tgatcgccgg gtcgattaag gacgccgggg atatcgttga 3901 ccgcgtgtcg cctgtgattg actcactggc ttcaaccgcg gacaatgctg 3951 tccaaggctt cctgaaaatc ctggccaagc tgatcggcta tataatgatc 4001 ctgttcggta gccccacccc tctctccgtt gccggtctcc ttgtcgtgat 4051 cgcctccgac tttgctcctg ccgtagtcca gtatttcaag aacgtcggga 4101 atccactcgc cgctctctac tactggattg cacgcaagct aggtctggaa 4151 agcgtgaccg ccaaggacgc cgtcgatgct gccccaaccc tctcccagct 4201 ttcctctgaa cccacccccg tccaaacccc accccagccc acccgacaag 4251 gcgtgaagga gtacaacgac ggagtgaacg ctctcaagaa tactgaatgg 4301 ctaatcaaaa agatctttga atacatcaag gacctgcttg aatggctcgg 4351 tgttcgcgct aagagtgaac cctccgccca actggcccag agtcacgaca 4401 ccatcatggc tctgttccag gactccatct ccgccacctc ggccccctcc 4451 ctggaccttc ctgctgcccg ttccaacctc gccaaagccc aatccctgct 4501 tcccctggcc accgcagcaa aatccaacac ccactcccac atcctcaccc 4551 aatcaatcaa gaattacact aatgcaattg cctctcaaga agccctcctg 4601 gccccaccac gccccgaacc ctatgtcctc tacctctatg gcaagcctgg 4651 ctccggtaag tctgtgttcg cacaggctct ggcccgcaca ctggcctatc 4701 acctctgtgg tgatcccgag tctgtctacg ccccctcctc gagcgactgc 4751 gcctactatg atggatacgc gcagcaatgc gtgcattaca tcgatgatgt 4801 aggccaagac cccgagggga aggactggaa agactttgcc cagcttgtct 4851 ccacctcccc tttcatcgtc cctatggctt ctcttgagaa gaaaggaatg 4901 ctttataatt caaaagtgat cattctcacc tccaacttct ctgagcccaa 4951 ccctcgcgct tcccgcatcc cccaagccct gcaacgccgc ttgaaatgca 5001 tgattgaaat tgaacccctc tcctgcccca cccaatccaa cctccacacc 5051 ctctcctccc tccccaacca attcaaccca gaaaccgccc tccgtgttga 5101 tggccccgca actcgttact ttgccaacga ctgccccatg ctccggttcg 5151 aagcgtttcg cctgacgtca aaccatggct tcaagcacgc tgacgacatc 5201 gtgaggcacg tccttgacaa ggtgaagaat tccgggggca ttagcaatgc 5251 cctggccgcg ctgatcccgg gcgtcaagcc gcttgcacgc cagcaagctg 5301 gtgacgaagt ccccatcagc aaggccccca cctgcttcac caacccttct 5351 tacattcccg gatctactga agatctgagt tgggacccga ccgacatcca 5401 gtcatcggtt cccactcccg aagttgtcgc cgtcaaaagc aacgacatcg 5451 gacttctgaa gaagatctgg aagtataaga agcccctcat tgctactgct 5501 accttcctct ccatcctcgc ctcggttact gtcctcttca cctccctcta 5551 caccaccttc cgctcccgct cccagcccca gggcgcctac gcaggcatgc 5601 ccctcgttcg cgaggggact gtctaccatg gcgcttactc cggtctcccc 5651 ctttcttccg cccccgcctc cactcgcccc aaggcctcgc cgcgccctct 5701 ccgacagggg ttgcaggaat gtgacatcgc gctctcgcgc aatgttgtga 5751 ctgtgacttc ctacgacgag actagtggta agatgctcca actcaacggg 5801 ctcgccctct ttgatcggtg ggtcgcaacc gtgactcaca tcaagctgga 5851 ccgcccaatg actgtggaca tcaatggctg ctcctaccct gtcacccgcc 5901 atgtggtgca tggtgagatc gctgccgtct atgctccaaa gatgccccag 5951 gtgcgtgaca tccgtcgctt tatccgggct ccaaggatgc atcatgtcgg 6001 taccgtgatt gccaactcca cctctggccc tgtgttcatg ttggccaaca 6051 acgtgaagca cggtgacaca ccctaccctg accttaccgg tctcactcag 6101 gtctacacgt atgacactcc gtcgtatgat ggcctgtgtg gggcacccct 6151 tatcctccac caccccgctt cccccacagt ggtgggtatc cacgaagctg 6201 gcgtcgctgg cgtcagtgga gtggctatcc cgctgctgcc cctccttgaa 6251 aagatccctc tccccaccca gcaatccgta atcactcccc tccccatgcc 6301 tggccccggc gtccacatcc cccgccgctc ccgcctccgc ccctccccgg 6351 ccatgggtgc ctttcctgtt gagaaaatcc ctgctgctct gtcaagtcat 6401 gacaagcgtc tgcctgaggg agtcgacgtt gacaccgtcg cattctcgaa 6451 gcagaacagg ggtgacctcg acaagccctg gcccaccctc cccgttgctg 6501 ttgatcttta cttttcccag tgtgatttcc ccaagctacg catgctgtcg 6551 atggacgagg ctatcaacgg aactccactc cttgacggtc tcgatatgaa 6601 gcagtctgct ggctacccct ggtccctcac caccaaccgc cgttccctct 6651 tcacgcaaga ccctgagact ggaaagtaca agcctgtccc ggaacttgag 6701 gaagccgtcc tggcgtgcct cgagaacccg gactacttct acacgaccat 6751 gttgaaggat gagctgagac caacggaaaa ggctctggct ggcaaaactc 6801 gtctgatcga ggctgcgccc atccatgcga tcatcgctgg acgcatgctg 6851 ctcggaggtc tcttcgaaca catgcacgcg cgccctggcc agtacgggtc 6901 tgctgtcggc tgtgatcccg actaccattg gactccgttc ttccactcct 6951 ttgaccggtt tgcagaagtt tgggctctgg actactcctg tttcgactct 7001 actctcccct cctgcgcttt cgacctaatc gctgctaaac tctctcaaat 7051 catcactcct ctccccggca ttgccgagga tgccatcgtg aagtacatcc 7101 ggtccattag cgtgtccaag cacgtttttg gcgatcgggc gtatctgatg 7151 accggtggca acccctctgg ctgtgttgga acctcaatcc tcaactccat 7201 gattaataac tctgtcctga tctctgcttt cctcacccac ccccagttca 7251 accctgcgga gatgcgcatc ctcacctacg gtgacgacgt gctctacgcc 7301 accaccccca ccatccaccc ttccttcgtc aaatccttct tcgatcagaa 7351 caccacccta atcgtgaccc ctgccactaa ggccggtgac ttcccggatc 7401 actccacgat ctgggacgtt accttcctga agcgctggtt cgtccccgac 7451 gaagagcgcc cgtggtacat ccaccccgtg attgaacccg ccacttacga 7501 gcagtctgtc atgtggacca gagggggaga tttccaagat gtggtaacct 7551 ccctctcttt ccttgcgcat catgctggac ccaccaacta tgatgcctgg 7601 gcgaccaagg tccgcgagca ggccgctcgc aaggggctcc tccccaacat 7651 cctcccctac tcctatctcc accaccgctg gctccagctg gtggtctctt 7701 aagtctgtgc cttccaagcg tgttggaagt aaagccacgc cggctcgccc 7751 ccgtcatagg gcaacccccg agtaccggtg gtctcgggtc tgctgctaaa 7801 cccagtgggc tcgttgccgt cccccattgc cggatctcca tactcgggta 7851 cacctccaag cattttctgt gatataaaga cctggaaaat tggcttttcc 7901 tccaggaccc taagcagaaa gtgcccccgt gctctttttc aattggcaaa 7951 ctcataggtt ggcccgcctc tctctgggcc ctcccttccc tgtgtcttga 8001 aatttggaaa atttcttgca aaaaaaaaaa aaaaa