Sequence of DPV Tomato yellow leaf curl Thailand virus
Tomato yellow leaf curl Thailand virus isolate LJ3-5 segment DNA-A, complete sequence.
ACC No: GU208516
Dated: 2010-09-07 | Length: 2744 | CRC: 1742747741
ID GU208516; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC GU208516; XX DT 28-DEC-2009 (Rel. 103, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Tomato yellow leaf curl Thailand virus isolate LJ3-5 segment DNA-A, DE complete sequence. XX KW . XX OS Tomato yellow leaf curl Thailand virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RX AGRICOLA; IND44357771. RX DOI; 10.1094/PDIS-94-5-0637B. RA Shih S.L., Tsai W.S., Lee L.M., Wang J.T., Green S.K., Kenyon L.; RT "First Report of Tomato yellow leaf curl Thailand virus Associated with RT Pepper Leaf Curl Disease in Taiwan"; RL Plant Dis. 94(5):637-637(2010). XX RN [2] RP 1-2744 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT ; RL Submitted (16-NOV-2009) to the EMBL/GenBank/DDBJ databases. RL Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Taiwan, RL Republic of China XX FH Key Location/Qualifiers FH FT source 1. .2744 FT /organism="Tomato yellow leaf curl Thailand virus" FT /segment="DNA-A" FT /host="pepper" FT /isolate="LJ3-5" FT /mol_type="genomic DNA" FT /country="Taiwan:Kaohsiung" FT /collection_date="Mar-2009" FT /db_xref="taxon:85752" FT gene 87. .473 FT /gene="AV2" FT CDS 87. .473 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D2KF20" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D2KF20" FT /protein_id="ADA71037.1" FT /translation="MVPYLRLSHQVSAKCKMWDPLLNEFPENVHGFRCMLAVKYLQAVE FT KTYSPDTLGFDLIRDLIGVIRAKNYVEASSRYSHFHARLESTSPSELRQPIQQPCCCPH FT CPRHKRADMEEPTCIQKAQVLQNV" FT gene 295. .1065 FT /gene="AV1" FT CDS 295. .1065 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q6R4D4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6R4D4" FT /protein_id="ADA71034.1" FT /translation="MSKRPADILISTPVSKVRRRLNFDSPYNSRAAVPTVRVTKGQIWK FT NRPAYRKPRFYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVIRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT gene complement(1062. .1466) FT /gene="AC3" FT CDS complement(1062. .1466) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancement protein" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5JUS0" FT /protein_id="ADA71036.1" FT /translation="MDLRTGELLTATQLESGVYIWTVKNPLYFKITKHLESPFQRNHDI FT ITLQIQFNHNLRKALGIHKCFLVCKIWTHLHPQTSRFLTVFKYQCIKYLDRLGVISINN FT VIRAMSHVLYNVLEGTIDVIEEHDIKFNIY" FT gene complement(1207. .1611) FT /gene="AC2" FT CDS complement(1207. .1611) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activation protein" FT /db_xref="GOA:D2KF23" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2KF23" FT /protein_id="ADA71035.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRIAKRATRRRRVDLPCGCSYFVAIG FT CHNNGFTHRGTTHCNSIREWRVYLDGQKSPIFQDNQAPREPIPEEPRHNHVTNPVQPQP FT EESVGDTQMFSSLQNLDSFTSSDLAFLNSI" FT gene complement(1514. .2599) FT /gene="AC1" FT CDS complement(1514. .2599) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:D2KF24" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2KF24" FT /protein_id="ADA71033.1" FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIQALGTPTNKLFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVTTYM FT EKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKASALTILREKAPKDFVLQFH FT NLNSNLDRIFTPPMEEYISPFSSSSFNQVPEELKKWACNNVLSAAARPLRPIGIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNNVWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAIRNAIFVTLKSPL FT YSGSNQSATPNSQEGNQTTES" FT gene complement(2149. .2448) FT /gene="AC4" FT CDS complement(2149. .2448) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D2KF25" FT /protein_id="ADA71038.1" FT /translation="MKMGLLTCMSSSNSKENSNVKIKDSSISHPQPGQHISIRTFRELK FT AQQMLQHTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSLY" XX SQ Sequence 2744 BP; 732 A; 538 C; 609 G; 865 T; 0 other; gu208516 Length: 2744 07-SEP-2010 Type: N Check: 4710 .. 1 accggatggc cgcgattttt tttgaagtgg tccccttgat gtgatgtgtc 51 atccaattaa aacgctcggc caaagcttaa ttatttatgg tcccctattt 101 aagacttagt caccaagttt cggcgaaatg caaaatgtgg gatccactcc 151 taaacgaatt tccggaaaac gtccacggtt tccgttgtat gttagcggtt 201 aagtatctgc aagcggtcga gaagacgtat tcacctgata ccctagggtt 251 tgatctcatc cgtgatctca tcggtgtaat tcgtgcgaag aactatgtcg 301 aagcgtccag cagatattct catttccacg cccgtctcga aagtacgtcg 351 ccgtctgaac ttcgacagcc catacaacag ccgtgctgct gtccccactg 401 tccgcgtcac aaaagggcag atatggaaga accgacctgc atacagaaag 451 cccaggttct acagaatgta tagaagtcct gatgtcccta agggatgtga 501 gggtccatgt aaagtgcaat ctttcgatgc gaagaacgac attggtcata 551 tgggcaaggt aatctgtctg tctgacgtta cccgtggtat tgggcttact 601 catcgagttg gcaagcgttt ctgtgtcaag tcactttatt ttgtcgggaa 651 gatctggatg gatgaaaata ttaaggttaa gaatcacact aataccgttt 701 tattttggat agttagggat cggcgtccta ctggaacgcc taatgatttt 751 cagcaggttt ttaatgtata tgataatgaa cccagcactg ctactgtaaa 801 gaacgaccag cgtgatcgtt tccaggttat aaggaggttt caggcaacgg 851 tgactggtgg acaatatgca gctaaggagc aggcgattat tagaaagttt 901 tatcgtgtta ataattatgt agtttacaat caccaggaag ctgggaagta 951 cgagaaccat actgaaaatg ctttgttgtt gtatatggca tgtactcatg 1001 cctctaatcc tgtgtatgct actttgaaag tcagaagtta tttctatgac 1051 tcagtcacga attaataaat attaaatttt atatcgtgtt cttcaattac 1101 atcaattgtt ccttctaata cattgtacag tacatgagac attgccctaa 1151 ttacattatt tatactaatc acgcctaatc tatctaaata tttaatacat 1201 tgatatttaa atactgttaa gaaacgcgag gtctgaggat gtaaatgagt 1251 ccagattttg cagactagaa aacatttgtg tatccccaac gctttcctca 1301 ggttgtggtt gaactggatt tgtaacgtga ttatgtcgtg gttcctctgg 1351 aatgggctct ctaggtgctt ggttatcttg aaatataggg gatttttgac 1401 cgtccagata tacacgccac tctctaattg agttgcagtg agtagttccc 1451 cggtgcgtaa atccattatt gtgacatcct attgcgacga agtacgaaca 1501 tccacaaggt agatcaactc tccgtcgtct ggttgccctc ttggctattc 1551 ggtgttgcac tttgattgga acctgagtag agtgggcttt tgagggtgac 1601 gaagatcgca tttcttatag cccagtttct aagtgcggag ttcttttctt 1651 cttccaagta ctctttataa ctggagttgg gtccaggatt gcagaggaag 1701 atagtgggaa ttccgccttt aatttgaact ggctttccat actttgtgtt 1751 tgattgccag tccctttggg cccccatgaa ttctttaaag tgttttagat 1801 agtgcggatc gacgtcatcg atgacgttgt accacacatt attattgtac 1851 acttttggac ttaaatctaa atggccacaa agataattat gtggtcccaa 1901 tgacctagcc cacatcgtct tccccgttct gctatcaccc tcaattacta 1951 taccaatggg tctcaatggc cgcgcagcgg cactgagaac attattacaa 2001 gcccattttt taagttcttc tggaacttga ttaaaagaag aagaagaaaa 2051 tggagaaata tattcctcca ttggaggagt aaaaatccta tctaaattag 2101 aatttaaatt atgaaattgc aaaacaaaat ctttaggggc tttttccctc 2151 agtatagtga gggccgaagc tttggaccct gaattgattg cctcggcata 2201 tgcgtcgttg gcagattggc aacctcctct agccgatctt ccatcgatct 2251 ggaaaattcc atgatcaagc acgtctccgt ctttttccat gtatgttgta 2301 acatctgttg agcttttagc tccctgaatg ttcggatgga aatgtgctga 2351 cctggttggg gatgtgagat cgaagaatct ttgattttta cattggaatt 2401 ttccttcgaa ttggatgagg acatgcaggt gaggagtccc atcttcatgg 2451 agttccctgc agattctgat gaataattta ttagttggtg ttcctagtgc 2501 ttgaatttgg gaaagtgctt cctctttagt gagagaacaa tgtgggtatg 2551 tcaggaaata gttcttggca tttattctga atttattagg aggagccatt 2601 gactggtcaa tcggtgtctc tcaaacttgg ctatgcaatc ggtgtctggg 2651 gtcttattta tacctgggca ccaaatggca taattgtaat ttagtgaatg 2701 tgatttaaaa ttcaaaatcc aaaagcggcc atccgtataa tatt