Sequence of DPV Tomato yellow mosaic virus

Tomato yellow mosaic virus clone AN152 replication-associated protein gene, complete cds.

ACC No: GU320571

Dated: 2010-06-02 | Length: 1367 | CRC: -2089455918

                
ID   GU320571; SV 1; linear; genomic DNA; STD; VRL; 1367 BP.
XX
AC   GU320571;
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DT   02-JUN-2010 (Rel. 105, Created)
DT   02-JUN-2010 (Rel. 105, Last updated, Version 1)
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DE   Tomato yellow mosaic virus clone AN152 replication-associated protein gene,
DE   complete cds.
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KW   .
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OS   Tomato yellow mosaic virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
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RN   [1]
RP   1-1367
RA   McLaughlin P.D., Roye M.E., Amarakoon I., McLaughlin W.A., Maxwell D.;
RT   "Detection of Begomoviruses Associated with Crops and Weeds in Caribbean
RT   Islands of Antigua, Barbados and St Kitts & Nevis";
RL   Unpublished.
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RN   [2]
RP   1-1367
RA   McLaughlin P.D., Roye M.E., Amarakoon I., McLaughlin W.A., Maxwell D.;
RT   ;
RL   Submitted (11-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL   Biotechnology Centre, The University of the West Indies, Mona, Kingston,
RL   St, Andrew Kingston 7, Jamaica
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1367
FT                   /organism="Tomato yellow mosaic virus"
FT                   /host="tomato"
FT                   /mol_type="genomic DNA"
FT                   /country="Antigua and Barbuda:Sanderson"
FT                   /clone="AN152"
FT                   /db_xref="taxon:95525"
FT   CDS             complement(7. .1080)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /protein_id="ADG27864.1"
FT                   /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNIETPTNKKYIKVC
FT                   REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT                   DGDFIDFGVFQIDGRSARGGQQSANDAYAGALNSGSKSEALNILKEKAPKDYILQFHNL
FT                   NSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT                   TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT                   NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT                   SINQGPTQDSQEETNKA"
XX
SQ   Sequence 1367 BP; 351 A; 273 C; 292 G; 451 T; 0 other;

gu320571 Length: 1367  02-JUN-2010  Type: N  Check: 8464  ..

       1  acacgcttac gccttattgg tttcttcttg gctatcttgt gttggacctt
      51  gattgatact tgcgaacagt ggctcgtaga gggtgacgaa ggttgcattc
     101  ttgagagccc aatttttcaa ggatatgttt ttttcttcgt ctagatattc
     151  cctatatgag gaggtaggtc ctggattgca gaggaagata gtgggaattc
     201  cccctttaat ttgaatgggc ttcccgtact ttgtgttgct ttgccagtcc
     251  ctctgggccc ccatgaattc cttgaagtgc tttaaataat gcgggtctac
     301  gtcatcaatg acgttgtacc acgcatcatt actgtacacc tttgggctta
     351  ggtctagatg tccacataaa taattatgtg ggcctagaga cctggcccac
     401  attgttttgc ctgttctgct atcaccctca atgacaatac ttatgggtct
     451  ccatggccgc gcagcggaag acacgacgtt ctcggcgacc cactcttcaa
     501  gttcatctgg aacttgatta aaagaagaag aaagaaatgg agaaacataa
     551  acttctaaag gaggactaaa aatcctatct aaatttgaat ttaaattatg
     601  aaattgtaaa atatagtcct ttggggcctt ttcttttaat atattgaggg
     651  cctcggattt actgcctgaa ttgagtgctc cggcgtatgc gtcgttggca
     701  gattgctgac ctcctctagc tgatctgcca tcgatttgga aaactccaaa
     751  atcaatgaag tctccgtctt tctccacgta ggtcttgaca tctgttgagc
     801  tcttagctgc ctgaatgttt ggatggaaat gtgctgacct gtttggggat
     851  accaggtcga agaaccgttg gttcttacat tggtatttgc cttcgaattg
     901  gataagcaca tggagatgtg gttccccatt ctcgtggaat tctctgcaaa
     951  ctttgatgta ttttttattt gttggggttt ctatgttttt taattgggaa
    1001  agtgcttcct ctttagagag agaacaattg ggatatgtta ggaaataatt
    1051  cttggcatat attttaaata aacgaggcat gttgaaatga atcggtgtcc
    1101  ctcaaagctc tatggcaatc ggtgtatcgg tgtcttacta atacctcgac
    1151  acctaatggc aatttggtaa tttcataaat gttcattgca attcaaaatt
    1201  caaaattcaa aaatcaaatc attaaagcgg tcatccgtat aatattaccg
    1251  gatggccgcg ccttttcctt ttatgtggtc cccacgaggg ttacacagac
    1301  gtcactgtca accaatcaaa ttgcatcctc aaacgttaga taagtgttta
    1351  ttttccttta tatactt