Sequence of DPV Tomato yellow leaf curl virus

Tomato yellow leaf curl virus isolate Bos, complete genome.

ACC No: GU325634

Dated: 2011-05-05 | Length: 2774 | CRC: 46719911

                
ID   GU325634; SV 1; circular; genomic DNA; STD; VRL; 2774 BP.
XX
AC   GU325634;
XX
DT   05-FEB-2010 (Rel. 103, Created)
DT   05-MAY-2011 (Rel. 108, Last updated, Version 3)
XX
DE   Tomato yellow leaf curl virus isolate Bos, complete genome.
XX
KW   .
XX
OS   Tomato yellow leaf curl virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2774
RX   PUBMED; 20963475.
RA   Kim S.H., Oh S., Oh T.K., Park J.S., Kim S.C., Kim S.H., Kim Y.S.,
RA   Hong J.K., Sim S.Y., Park K.S., Lee H.G., Kim K.J., Choi C.W.;
RT   "Genetic diversity of tomato-infecting Tomato yellow leaf curl virus
RT   (TYLCV) isolates in Korea";
RL   Virus Genes 42(1):117-127(2011).
XX
RN   [2]
RP   1-2774
RA   Kim S., Oh T.-K., Oh S., Kim J., Lee W., Jang K., Choi C., Kim S., Kim Y.;
RT   ;
RL   Submitted (16-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL   Department of Biology & Medicinal Science, Pai Chai University, 439-6 Doma
RL   2-dong, Seo-gu, Daejeon 302-735, South Korea
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2774
FT                   /organism="Tomato yellow leaf curl virus"
FT                   /lab_host="Lycopersicon esculentum"
FT                   /isolate="Bos"
FT                   /mol_type="genomic DNA"
FT                   /country="South Korea:Boseong"
FT                   /collection_date="13-Oct-2009"
FT                   /PCR_primers="fwd_seq: gaattcatgtcgaagcgwcca, rev_seq:
FT                   atgacgtctgtgtaaccctcg"
FT                   /PCR_primers="fwd_seq: gcatgcctcgaatccagtgtatgc, rev_seq:
FT                   gaattcttaatttkrtaytgaatcatagaa"
FT                   /PCR_primers="fwd_seq: taccacgcatcattgctgtaca, rev_seq:
FT                   gcatgcgtacatgccatatacagtaac"
FT                   /db_xref="taxon:10832"
FT   gene            307. .657
FT                   /gene="V2"
FT   CDS             307. .657
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="V2"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:D3JXC1"
FT                   /protein_id="ADB97307.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT                   ISVVRARDYVEAPRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT                   PKAQNIQNVSKP"
FT   gene            467. .1237
FT                   /gene="V1"
FT   CDS             467. .1237
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="V1"
FT                   /note="coat protein"
FT                   /db_xref="GOA:C6JW14"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:C6JW14"
FT                   /protein_id="ADB97308.1"
FT                   /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT                   TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT                   RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT                   EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATMKIRIYFYDSI"
FT   gene            complement(1240. .1644)
FT                   /gene="C3"
FT   CDS             complement(1240. .1644)
FT                   /codon_start=1
FT                   /gene="C3"
FT                   /product="C3"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D3JXC3"
FT                   /protein_id="ADB97309.1"
FT                   /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT                   ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLHPQTGHFLRVFRYEVLKYLDSLGVISINN
FT                   VIRSIDHVLYDVLENTINVTETHDIKYKFY"
FT   gene            complement(1385. .1792)
FT                   /gene="C2"
FT   CDS             complement(1385. .1792)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="C2"
FT                   /db_xref="GOA:D3JXC4"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D3JXC4"
FT                   /protein_id="ADB97310.1"
FT                   /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT                   NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT                   HQEGHGDSQMFSQLPNLDDITSSDWSFLKSI"
FT   gene            complement(1701. .2774)
FT                   /gene="C1"
FT   CDS             complement(1701. .2774)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="C1"
FT                   /note="replication-associated protein"
FT                   /db_xref="GOA:C6JW17"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:C6JW17"
FT                   /protein_id="ADB97311.1"
FT                   /translation="MPRLFNIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT                   KELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT                   DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT                   SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT                   TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT                   NTKYGKPIQIKGGIPTIFLCNQGPTSSYKEYLDEEKNISLKNWTLKNATFVTLYEPLFA
FT                   SINQGPTQDSQEETNKA"
FT   gene            complement(2330. .2623)
FT                   /gene="C4"
FT   CDS             complement(2330. .2623)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:Q1ENB7"
FT                   /protein_id="ADB97312.1"
FT                   /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT                   QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY"
XX
SQ   Sequence 2774 BP; 753 A; 532 C; 609 G; 880 T; 0 other;

gu325634 Length: 2774  05-MAY-2011  Type: N  Check: 4820  ..

       1  gttgaaatga atcggtgtcc ctcaaagctc tatggcaatc ggtgtatcgg
      51  tgtcttactt atacctggac acctaatggc tatttggtaa tttcatgaat
     101  gttcattgta attcaaaatt caaaaatcaa atcattaaag cggccatccg
     151  tataatatta ccggatggcc gcgccttttc cttttatgtg gtccccacga
     201  gggttacaca gacgtcaccg tcaaccaatc aaattgcatc ctcaaacgtt
     251  agataagtgt tcatttgtct ttatatactt ggtccccaag ttttttgtct
     301  tgcaatatgt gggacccact tcttaatgag tttcctgaat ctgttcacgg
     351  atttcgttgt atgttagcta ttaaatattt gcagtccgtt gaggaaactt
     401  acgagcccaa tacattgggc cacgatttaa ttagggatct tatatctgtt
     451  gtaagggccc gtgactatgt cgaagcgccc aggcgatata atcatttcca
     501  cgcccgtctc gaaggttcgc cgaaggctga acttcgacag cccatacagc
     551  agccgtgctg ctgtccccat tgtccaaggc acaaacaagc gacgatcatg
     601  gacgtacagg cccatgtacc gaaagcccag aatatacaga atgtatcgaa
     651  gccctgatgt tccccgtgga tgtgaaggcc catgtaaagt ccagtcttat
     701  gagcaacggg atgatattaa gcatactggt attgttcgtt gtgttagtga
     751  tgttactcgt ggatctggaa ttactcacag agtgggtaag aggttctgtg
     801  ttaaatcgat atatttttta gggaaagtct ggatggatga aaatatcaag
     851  aagcagaatc acactaatca ggtcatgttc ttcttagtcc gtgatagaag
     901  gccctatgga agcagcccaa tggattttgg acaggttttt aatatgttcg
     951  ataatgagcc cagtaccgct accgtgaaga atgatttgcg ggataggttt
    1001  caagtgatga ggaaatttca tgctacagtt attggtggac cctctggaat
    1051  gaaggaacag gcattagtta agagattttt taaaattaac agtcatgtaa
    1101  cttataatca tcaggaggca gccaagtacg agaaccatac tgaaaacgcc
    1151  ttgttactgt atatggcatg tacgcatgcc tcgaatccag tgtatgcaac
    1201  tatgaaaata cgcatctatt tctatgattc aatataaaat taataaaatt
    1251  tatattttat atcatgagtt tctgttacat ttattgtgtt ttcaagtaca
    1301  tcatacaata catgatcaat tgatctgatt acattgttaa tggaaattac
    1351  accaagacta tctaaatact taagaacttc atatctaaat actcttaaga
    1401  aatgaccagt ctgaggatgt aatgtcgtcc aaattcggaa gttgagaaaa
    1451  catttgtgaa tccccatgac cttcctgatg ttgtggttga atcttatctg
    1501  aatggaaatg atgtcgtggt tcattagaaa tggcctctgg ctgtgttctg
    1551  ttatcttgaa atagagggga ttgtttatct cccagataaa aacgccattc
    1601  tctgcctgag gagcagtgat gagttcccct gtgcgtgaat ccatgattat
    1651  tgcagttgag gtggaggtag tatgagcagc cacagtctag gtctacacgc
    1701  ttacgcctta ttggtttctt cttggctatc ttgtgttgga ccttgattga
    1751  tacttgcgaa cagtggctcg tagagggtga cgaaggttgc attcttgaga
    1801  gtccaatttt tcaaggatat gtttttttct tcgtctagat attccttata
    1851  tgaggaggta ggtccttgat tgcagaggaa gatagtggga attccccctt
    1901  taatttgaat gggcttcccg tactttgtgt tgctttgcca gtccctttgg
    1951  gcccccataa attccttgaa gtgctttaaa taatgcgggt ctacgtcatc
    2001  aatgacgttg taccacgcat cattgctgta cacctttggg cttaggtcta
    2051  gatgtccaca taaataatta tgtgggccta gagacctggc ccacattgtt
    2101  ttccctgttc tgctatcacc ctcaatgaca atacttatgg gtctccatgg
    2151  ccgcgcagcg gaagacacga cgttctcggc gacccactct tcaagttcat
    2201  ctggaacttg attaaaagaa gaagaaagaa atggagaaac ataaacttct
    2251  aaaggaggac taaaaatcct atctaaattt gaacttaaat tatgaaattg
    2301  taaaatatag tcctttgggg ccttctcttt taatatattg agggcctcgg
    2351  atttactgcc tgaattgagt gcttcggcat atgcgtcgtt ggcagattgc
    2401  tgacctcctc tagctgatct gccatcgatt tggaaaactc caaaatcaat
    2451  gaagtctccg tctttctcca cgtaggtctt gacatctgtt gagctcttag
    2501  ctgcctgaat gttcggatgg aaatgtgctg acctgtttgg ggataccagg
    2551  tcgaagaacc gttggttctt acattggtat ttgccttcga attggataag
    2601  cacatggaga tgtggttccc cattctcgtg gagttctttg caaactttga
    2651  tgtatttttt atttgttggg gtttctaggt tttttaattg ggaaagtgct
    2701  tcctctttag agagagaaca attgggatat gttaggaaat aatttttggc
    2751  atatatatta aataaacgag gcat