Sequence of DPV Homalodisca vitripennis reovirus
Homalodisca vitripennis reovirus isolate Bakersfield segment 5, complete sequence.
ACC No: GU362068
Dated: 2010-09-28 | Length: 2521 | CRC: -739478360
ID GU362068; SV 1; linear; genomic RNA; STD; VRL; 2521 BP.
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AC GU362068;
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DT 28-SEP-2010 (Rel. 106, Created)
DT 28-SEP-2010 (Rel. 106, Last updated, Version 1)
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DE Homalodisca vitripennis reovirus isolate Bakersfield segment 5, complete
DE sequence.
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KW .
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OS Homalodisca vitripennis reovirus
OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Phytoreovirus;
OC unclassified Phytoreovirus.
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RN [1]
RP 1-2521
RA Stenger D.C., Sisterson M.S., French R.;
RT "Population genetics of Homalodisca vitripennis reovirus validates timing
RT and limited introduction to California of its invasive insect host, the
RT glassy-winged sharpshooter";
RL Virology 407(1):53-59(2010).
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RN [2]
RP 1-2521
RA Stenger D.C.;
RT ;
RL Submitted (27-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA
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CC GenBank Accession Numbers GU362064-GU362075 represent the complete
CC genome of Homalodisca vitripennis reovirus Bakersfield isolate.
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FH Key Location/Qualifiers
FH
FT source 1. .2521
FT /organism="Homalodisca vitripennis reovirus"
FT /segment="5"
FT /host="Homalodisca vitripennis"
FT /isolate="Bakersfield"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="2008"
FT /db_xref="taxon:411854"
FT CDS 27. .2441
FT /codon_start=1
FT /product="minor core protein"
FT /protein_id="ADN64779.1"
FT /translation="MGDDAYCIPNFSQTIDKRVILNVFEACRHRSPIAIIGLPHRDVAV
FT KYSSKLSTGSGTIVYFLHDSTNITNDLFSVFRAVGTQLLMGCQIVIFVTIPTTKLTLNT
FT LKSIGWAFRAAVADFRDTSREDPNLIDFMDTTLDLAPLFNVPKCGIAYYGPTIFSELLE
FT LTNKGLLKTKWYATIDYSMFSRSAITAFAAYMLKAAGIDRKSMKAAVVGYNPPYVWTGL
FT KHGLQVKYLELHVRSPGGLGPRRLILPKLDFKDEPNKVKYVVHNPQIKLLCHDMTFLSI
FT SRNVLYIGSYPATHLEGLNLYGWKLLCVDPKNTPEWAEIMRKKTNADITQIGLPYDFTT
FT PGVFPKYVKKVFGNERFVVMDDSWIDGRAEYEDFQLLKQSYFESVCASDDQMILASVKW
FT HRTKDTTVKYLLALLPQPYGGSIRELRAVFSKHGVSSITIKSSDTEAYLDKFNKMSQSS
FT QIYTQAFMHQLLTTTKDALEYDVPNDTALIASYSLSNSNNSKSRVLQCLDNYAKMKKVV
FT IFGAPNLLRLKFMKEIGLMLDSSIKIKDDLISFSNPSGKKWVDRGYTAEEMQSVGFIEI
FT TVEQMVSLCGGDYAGCGYFVNSSYNDIFSWYIPMWMVGKLMLQDIRTSPSALVKCFTTV
FT IRSLCFVPHRVYYAYRSYMVAKHLAANNVLNTAYTLIGSSDATFIVNSNFSIPHPAGPL
FT NFTAGDKVNISGHLLSLSIAAHFVAAPILLWAHQMKYMTQNRKKDPKIDPLLYFDNKLD
FT KQGSLMQWHSREEVLLACLIVEDYVSMMFNGNYSKSIINDITATMAKVFKA"
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SQ Sequence 2521 BP; 827 A; 416 C; 528 G; 750 T; 0 other;
gu362068 Length: 2521 28-SEP-2010 Type: N Check: 3794 ..
1 ggcatcagtt ggatgtgatt cgaaaaatgg gcgatgacgc ttactgtata
51 ccaaattttt ctcaaactat agacaaaaga gtaatcctaa atgtatttga
101 agcctgtaga cataggtcgc caattgctat tattggctta ccgcatcggg
151 atgttgcagt caaatactca agtaaattgt caactggaag cggaactatc
201 gtatacttcc tccacgatag tactaatatt actaatgatt tattttctgt
251 ttttagagcg gttggtactc agctgctaat gggatgtcaa attgttatat
301 ttgtcaccat acccacaact aaattaacgc ttaatacgtt aaaatcaata
351 gggtgggctt tccgcgcagc tgtagctgac ttcagagata catcacgaga
401 agatccaaat ttgatagact ttatggatac tacgcttgac ctagctccat
451 tatttaacgt tccgaaatgc ggaatagcat attatggacc tactatattt
501 tcggaattac tcgaactaac aaacaaagga ttattgaaaa ccaaatggta
551 tgccaccatt gattattcaa tgttctctag atcagcgatt acagcattcg
601 cggcatatat gttgaaagct gccggaattg atagaaaatc aatgaaagcc
651 gcagttgtag gatataatcc accgtacgta tggactgggt taaagcacgg
701 attgcaagtt aaatatttag aattacatgt cagatcacct ggtggattgg
751 gacctaggag gctcattctt ccaaaacttg actttaaaga tgaaccaaac
801 aaggtaaagt atgtggtgca taatccacaa attaagctat tatgtcatga
851 tatgactttc ttatctatat caagaaatgt tctatatata ggttcgtatc
901 cagcaactca cttagaaggg ttaaatttat acggatggaa actgctgtgt
951 gttgatccta aaaatacgcc agagtgggct gagataatga ggaagaaaac
1001 taacgcagac attacgcaaa tagggcttcc atatgatttc acaacacctg
1051 gtgtatttcc aaaatacgtt aagaaagtat ttgggaatga aagattcgta
1101 gttatggatg attcctggat tgatggtcgg gcggagtatg aagattttca
1151 acttttaaaa caaagttatt tcgagagtgt ttgtgcgtct gatgaccaaa
1201 tgattctagc gtcggtaaag tggcatagga ccaaagatac taccgtaaag
1251 tatctgctag ctctattacc gcagccgtat ggtggtagca ttcgcgaatt
1301 gcgagcagtt ttcagcaaac atggagtgtc atctattact ataaaaagta
1351 gtgacactga ggcttactta gataagttca ataaaatgtc acaatcaagt
1401 cagatatata cgcaagcttt tatgcatcaa ttattaacaa ccacaaagga
1451 tgcgcttgaa tatgatgtac caaatgatac ggcattaata gcatcatatt
1501 cattatcaaa ttcaaataac tcaaaatcac gagttttgca atgccttgat
1551 aattatgcaa aaatgaagaa ggtagtaata ttcggagctc caaatctgtt
1601 acgacttaag ttcatgaagg aaataggatt aatgttagat agtagtatta
1651 aaataaagga cgatctaatc tcattctcga atccatcggg caaaaaatgg
1701 gttgatagag gatatactgc agaggagatg caatctgtgg gattcatcga
1751 aataacggtt gaacaaatgg tgtcattatg tggaggggac tacgcgggat
1801 gtggttattt cgtgaactct tcctataatg atatattctc atggtatata
1851 ccaatgtgga tggtgggtaa gttaatgctt caggatataa gaacgtcgcc
1901 atcagcatta gtaaaatgtt tcacaacagt aattaggagt ttgtgtttcg
1951 tgcctcatcg agtatattat gcatataggt cttatatggt tgcgaagcat
2001 ttagccgcaa ataatgtgtt aaacacagcg tacacgttga ttggatcatc
2051 ggacgctacg tttattgtta attcaaattt ttcaatacca catcccgcag
2101 gaccattgaa ttttactgca ggtgataagg ttaatatatc ggggcattta
2151 ctatcgctat ctatagctgc gcatttcgtg gcagctccaa tattattatg
2201 ggcgcaccaa atgaagtata tgacacagaa cagaaagaaa gatccaaaaa
2251 ttgatccatt gttatatttt gataacaaat tggacaagca gggaagttta
2301 atgcaatggc attcaaggga agaagtgcta ttggcatgtt taattgttga
2351 agattacgtt agtatgatgt ttaatggaaa ttattccaaa agcatcatta
2401 atgacattac agccacaatg gcgaaagtat tcaaagcgta ggagctcaag
2451 ataggtgtta gtgtcattag accacggtga tacgcattct agggggcaga
2501 gtcatgttac aactatttga t