Sequence of DPV Homalodisca vitripennis reovirus
Homalodisca vitripennis reovirus isolate Bakersfield segment 5, complete sequence.
ACC No: GU362068
Dated: 2010-09-28 | Length: 2521 | CRC: -739478360
ID GU362068; SV 1; linear; genomic RNA; STD; VRL; 2521 BP. XX AC GU362068; XX DT 28-SEP-2010 (Rel. 106, Created) DT 28-SEP-2010 (Rel. 106, Last updated, Version 1) XX DE Homalodisca vitripennis reovirus isolate Bakersfield segment 5, complete DE sequence. XX KW . XX OS Homalodisca vitripennis reovirus OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Phytoreovirus; OC unclassified Phytoreovirus. XX RN [1] RP 1-2521 RA Stenger D.C., Sisterson M.S., French R.; RT "Population genetics of Homalodisca vitripennis reovirus validates timing RT and limited introduction to California of its invasive insect host, the RT glassy-winged sharpshooter"; RL Virology 407(1):53-59(2010). XX RN [2] RP 1-2521 RA Stenger D.C.; RT ; RL Submitted (27-DEC-2009) to the EMBL/GenBank/DDBJ databases. RL USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA XX CC GenBank Accession Numbers GU362064-GU362075 represent the complete CC genome of Homalodisca vitripennis reovirus Bakersfield isolate. XX FH Key Location/Qualifiers FH FT source 1. .2521 FT /organism="Homalodisca vitripennis reovirus" FT /segment="5" FT /host="Homalodisca vitripennis" FT /isolate="Bakersfield" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="2008" FT /db_xref="taxon:411854" FT CDS 27. .2441 FT /codon_start=1 FT /product="minor core protein" FT /protein_id="ADN64779.1" FT /translation="MGDDAYCIPNFSQTIDKRVILNVFEACRHRSPIAIIGLPHRDVAV FT KYSSKLSTGSGTIVYFLHDSTNITNDLFSVFRAVGTQLLMGCQIVIFVTIPTTKLTLNT FT LKSIGWAFRAAVADFRDTSREDPNLIDFMDTTLDLAPLFNVPKCGIAYYGPTIFSELLE FT LTNKGLLKTKWYATIDYSMFSRSAITAFAAYMLKAAGIDRKSMKAAVVGYNPPYVWTGL FT KHGLQVKYLELHVRSPGGLGPRRLILPKLDFKDEPNKVKYVVHNPQIKLLCHDMTFLSI FT SRNVLYIGSYPATHLEGLNLYGWKLLCVDPKNTPEWAEIMRKKTNADITQIGLPYDFTT FT PGVFPKYVKKVFGNERFVVMDDSWIDGRAEYEDFQLLKQSYFESVCASDDQMILASVKW FT HRTKDTTVKYLLALLPQPYGGSIRELRAVFSKHGVSSITIKSSDTEAYLDKFNKMSQSS FT QIYTQAFMHQLLTTTKDALEYDVPNDTALIASYSLSNSNNSKSRVLQCLDNYAKMKKVV FT IFGAPNLLRLKFMKEIGLMLDSSIKIKDDLISFSNPSGKKWVDRGYTAEEMQSVGFIEI FT TVEQMVSLCGGDYAGCGYFVNSSYNDIFSWYIPMWMVGKLMLQDIRTSPSALVKCFTTV FT IRSLCFVPHRVYYAYRSYMVAKHLAANNVLNTAYTLIGSSDATFIVNSNFSIPHPAGPL FT NFTAGDKVNISGHLLSLSIAAHFVAAPILLWAHQMKYMTQNRKKDPKIDPLLYFDNKLD FT KQGSLMQWHSREEVLLACLIVEDYVSMMFNGNYSKSIINDITATMAKVFKA" XX SQ Sequence 2521 BP; 827 A; 416 C; 528 G; 750 T; 0 other; gu362068 Length: 2521 28-SEP-2010 Type: N Check: 3794 .. 1 ggcatcagtt ggatgtgatt cgaaaaatgg gcgatgacgc ttactgtata 51 ccaaattttt ctcaaactat agacaaaaga gtaatcctaa atgtatttga 101 agcctgtaga cataggtcgc caattgctat tattggctta ccgcatcggg 151 atgttgcagt caaatactca agtaaattgt caactggaag cggaactatc 201 gtatacttcc tccacgatag tactaatatt actaatgatt tattttctgt 251 ttttagagcg gttggtactc agctgctaat gggatgtcaa attgttatat 301 ttgtcaccat acccacaact aaattaacgc ttaatacgtt aaaatcaata 351 gggtgggctt tccgcgcagc tgtagctgac ttcagagata catcacgaga 401 agatccaaat ttgatagact ttatggatac tacgcttgac ctagctccat 451 tatttaacgt tccgaaatgc ggaatagcat attatggacc tactatattt 501 tcggaattac tcgaactaac aaacaaagga ttattgaaaa ccaaatggta 551 tgccaccatt gattattcaa tgttctctag atcagcgatt acagcattcg 601 cggcatatat gttgaaagct gccggaattg atagaaaatc aatgaaagcc 651 gcagttgtag gatataatcc accgtacgta tggactgggt taaagcacgg 701 attgcaagtt aaatatttag aattacatgt cagatcacct ggtggattgg 751 gacctaggag gctcattctt ccaaaacttg actttaaaga tgaaccaaac 801 aaggtaaagt atgtggtgca taatccacaa attaagctat tatgtcatga 851 tatgactttc ttatctatat caagaaatgt tctatatata ggttcgtatc 901 cagcaactca cttagaaggg ttaaatttat acggatggaa actgctgtgt 951 gttgatccta aaaatacgcc agagtgggct gagataatga ggaagaaaac 1001 taacgcagac attacgcaaa tagggcttcc atatgatttc acaacacctg 1051 gtgtatttcc aaaatacgtt aagaaagtat ttgggaatga aagattcgta 1101 gttatggatg attcctggat tgatggtcgg gcggagtatg aagattttca 1151 acttttaaaa caaagttatt tcgagagtgt ttgtgcgtct gatgaccaaa 1201 tgattctagc gtcggtaaag tggcatagga ccaaagatac taccgtaaag 1251 tatctgctag ctctattacc gcagccgtat ggtggtagca ttcgcgaatt 1301 gcgagcagtt ttcagcaaac atggagtgtc atctattact ataaaaagta 1351 gtgacactga ggcttactta gataagttca ataaaatgtc acaatcaagt 1401 cagatatata cgcaagcttt tatgcatcaa ttattaacaa ccacaaagga 1451 tgcgcttgaa tatgatgtac caaatgatac ggcattaata gcatcatatt 1501 cattatcaaa ttcaaataac tcaaaatcac gagttttgca atgccttgat 1551 aattatgcaa aaatgaagaa ggtagtaata ttcggagctc caaatctgtt 1601 acgacttaag ttcatgaagg aaataggatt aatgttagat agtagtatta 1651 aaataaagga cgatctaatc tcattctcga atccatcggg caaaaaatgg 1701 gttgatagag gatatactgc agaggagatg caatctgtgg gattcatcga 1751 aataacggtt gaacaaatgg tgtcattatg tggaggggac tacgcgggat 1801 gtggttattt cgtgaactct tcctataatg atatattctc atggtatata 1851 ccaatgtgga tggtgggtaa gttaatgctt caggatataa gaacgtcgcc 1901 atcagcatta gtaaaatgtt tcacaacagt aattaggagt ttgtgtttcg 1951 tgcctcatcg agtatattat gcatataggt cttatatggt tgcgaagcat 2001 ttagccgcaa ataatgtgtt aaacacagcg tacacgttga ttggatcatc 2051 ggacgctacg tttattgtta attcaaattt ttcaatacca catcccgcag 2101 gaccattgaa ttttactgca ggtgataagg ttaatatatc ggggcattta 2151 ctatcgctat ctatagctgc gcatttcgtg gcagctccaa tattattatg 2201 ggcgcaccaa atgaagtata tgacacagaa cagaaagaaa gatccaaaaa 2251 ttgatccatt gttatatttt gataacaaat tggacaagca gggaagttta 2301 atgcaatggc attcaaggga agaagtgcta ttggcatgtt taattgttga 2351 agattacgtt agtatgatgt ttaatggaaa ttattccaaa agcatcatta 2401 atgacattac agccacaatg gcgaaagtat tcaaagcgta ggagctcaag 2451 ataggtgtta gtgtcattag accacggtga tacgcattct agggggcaga 2501 gtcatgttac aactatttga t