Sequence of DPV Homalodisca vitripennis reovirus

Homalodisca vitripennis reovirus isolate Bakersfield segment 7, complete sequence.

ACC No: GU362070

Dated: 2010-09-28 | Length: 1702 | CRC: -440857323

                
ID   GU362070; SV 1; linear; genomic RNA; STD; VRL; 1702 BP.
XX
AC   GU362070;
XX
DT   28-SEP-2010 (Rel. 106, Created)
DT   28-SEP-2010 (Rel. 106, Last updated, Version 1)
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DE   Homalodisca vitripennis reovirus isolate Bakersfield segment 7, complete
DE   sequence.
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KW   .
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OS   Homalodisca vitripennis reovirus
OC   Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Phytoreovirus;
OC   unclassified Phytoreovirus.
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RN   [1]
RP   1-1702
RA   Stenger D.C., Sisterson M.S., French R.;
RT   "Population genetics of Homalodisca vitripennis reovirus validates timing
RT   and limited introduction to California of its invasive insect host, the
RT   glassy-winged sharpshooter";
RL   Virology 407(1):53-59(2010).
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RN   [2]
RP   1-1702
RA   Stenger D.C.;
RT   ;
RL   Submitted (27-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA
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CC   GenBank Accession Numbers GU362064-GU362075 represent the complete
CC   genome of Homalodisca vitripennis reovirus Bakersfield isolate.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1702
FT                   /organism="Homalodisca vitripennis reovirus"
FT                   /segment="7"
FT                   /host="Homalodisca vitripennis"
FT                   /isolate="Bakersfield"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:411854"
FT   CDS             26. .1549
FT                   /codon_start=1
FT                   /product="minor core protein"
FT                   /protein_id="ADN64763.1"
FT                   /translation="MSAIVGVCLLSETTVLVRNLNDVVKGLYSRIRGNVTPPKESIEAR
FT                   VSGQTVKVQRTIPINTVFIEYLDQDYISANPTMSAMEIIGSSGNTAPKTTFQSLLPSLS
FT                   ALFGVAFIQGAFMHRVISTTGPTISFLVLVIGPPGNFTRKPSVAAASSVVQVESTSDID
FT                   LNDTVKINALMLQNTKLVSASAIHATSLGEVSEKCDSLDTMIIMKALTYFKRYAYEQSL
FT                   GTMDNATRVYLNLPIDEIFSGRTASGEQLQNKIATFKESRGHLAGVVLPDGHGKSTLVS
FT                   DYPEIFTLLKDNNEATDPSDNGEIEANKSKGKYEGKIVLASSVKELFDNGIRVLGVLKL
FT                   ESEAQVEDEINKDQVLKNKKDKIMEGWKNTSGPNVVTSKNLPLLHDKVMDIVTTHTKGI
FT                   KTNRSGKPIEIKTDPKLRPETRISIYFKNGFPIARYSTNKLSKHGIDVVEAKDLNEDTI
FT                   IVSNKPKNTPRRVPQNVKTKLESMRSNLKVDVDTDNLTEEEFIAKIKAL"
XX
SQ   Sequence 1702 BP; 615 A; 276 C; 367 G; 444 T; 0 other;

gu362070 Length: 1702  28-SEP-2010  Type: N  Check: 1964  ..

       1  ggcatacaac ggtaacgtgt gtatcatgtc tgcaattgtt ggagtatgct
      51  tgctaagtga aacgacagtc ctagtgagaa atttaaatga tgtagttaaa
     101  ggtttgtatt cacggattcg agggaatgtg acaccaccta aagaatctat
     151  tgaagccaga gtttctggac aaaccgttaa agtgcaaaga acaataccaa
     201  taaatacagt atttatagaa tatttagatc aagattatat aagcgcaaac
     251  ccaacaatga gcgctatgga gataataggt agctcaggta atacggcacc
     301  gaaaacgaca tttcaaagcc tgttaccatc actatctgca ttatttggag
     351  tggcgttcat tcaaggcgca tttatgcata gagttatatc cacaacaggt
     401  ccaacgatat catttttggt attagtaata ggtccaccag gaaatttcac
     451  aagaaaacca agcgtagctg cagcatcgtc agtagttcaa gtggaatcga
     501  catcagacat tgatctgaac gatacagtga aaataaatgc tctaatgctg
     551  caaaatacaa aacttgtatc agcatcggca attcacgcaa cgtcgctggg
     601  tgaagtgtca gaaaaatgcg atagtttgga taccatgata atcatgaaag
     651  cattaacata ttttaaacgg tatgcatatg agcaaagtct tgggacgatg
     701  gataatgcaa cgcgtgtgta tctaaatctg ccaattgacg agatattctc
     751  agggagaacg gctagtggag aacaacttca aaacaaaata gcaacattca
     801  aagaatctcg tggtcactta gctggggtag tgttaccaga cggacatggt
     851  aaatcaactt tggtatctga ttatccagaa atatttacgc tgttaaaaga
     901  caataatgaa gctactgacc catcggataa tggggaaatt gaggctaata
     951  aatcaaaggg taagtatgaa ggtaaaatag tgctagctag tagtgtcaaa
    1001  gaattgtttg acaatgggat tcgcgtgtta ggagtcctaa aacttgaatc
    1051  tgaagctcaa gtggaggatg agataaataa agatcaagta cttaaaaata
    1101  aaaaagataa gattatggag ggatggaaaa atacatccgg tccaaatgtt
    1151  gtaactagta agaacttgcc tctattacat gacaaagtga tggatatagt
    1201  cacaacgcat actaaaggaa ttaagacaaa caggtcaggg aagcctattg
    1251  agataaagac tgatcccaag ctgagaccag agacaagaat cagtatttat
    1301  ttcaaaaatg gttttccaat tgctagatat tcaactaata agctatcaaa
    1351  gcacggtata gatgtagttg aggcaaagga tctaaatgag gacacaatta
    1401  tagtgtcgaa taaacctaag aatactccaa ggagagtacc tcaaaacgtt
    1451  aaaactaaac tcgaatcaat gcgatcgaat ttgaaggttg atgtcgatac
    1501  tgacaactta actgaggagg aattcatcgc caagattaaa gcattatgac
    1551  tattatttta cacttactca tcaatggtat atactaaggc gctgaggcgt
    1601  agagtgtccg cccatttgag gaaggttcgt cagcgaagca agaaagttat
    1651  gttcaatttg tagattatga tagtgcatcg agaacgttat cgttttaatg
    1701  at